LOCUS       NM_001130097            4590 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus ataxin 2-like (Atxn2l), transcript variant 1,
            mRNA.
ACCESSION   NM_001130097 XM_341928
VERSION     NM_001130097.3
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4590)
  AUTHORS   Guo,Z., Neilson,L.J., Zhong,H., Murray,P.S., Zanivan,S. and
            Zaidel-Bar,R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4590)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 4590)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   4  (bases 1 to 4590)
  AUTHORS   Kaehler,C., Isensee,J., Nonhoff,U., Terrey,M., Hucho,T., Lehrach,H.
            and Krobitsch,S.
  TITLE     Ataxin-2-like is a regulator of stress granules and processing
            bodies
  JOURNAL   PLoS One 7 (11), e50134 (2012)
   PUBMED   23209657
REFERENCE   5  (bases 1 to 4590)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   6  (bases 1 to 4590)
  AUTHORS   Meunier,C., Bordereaux,D., Porteu,F., Gisselbrecht,S., Chretien,S.
            and Courtois,G.
  TITLE     Cloning and characterization of a family of proteins associated
            with Mpl
  JOURNAL   J Biol Chem 277 (11), 9139-9147 (2002)
   PUBMED   11784712
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jan 6, 2023 this sequence version replaced NM_001130097.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC167761.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-710               JAXUCZ010000001.1  190519870-190520579 c
            711-747             JAXUCZ010000001.1  190518401-190518437 c
            748-804             JAXUCZ010000001.1  190518237-190518293 c
            805-876             JAXUCZ010000001.1  190518083-190518154 c
            877-1027            JAXUCZ010000001.1  190517700-190517850 c
            1028-1152           JAXUCZ010000001.1  190517106-190517230 c
            1153-1244           JAXUCZ010000001.1  190516187-190516278 c
            1245-1445           JAXUCZ010000001.1  190515356-190515556 c
            1446-1621           JAXUCZ010000001.1  190514540-190514715 c
            1622-1732           JAXUCZ010000001.1  190514292-190514402 c
            1733-1924           JAXUCZ010000001.1  190513410-190513601 c
            1925-1996           JAXUCZ010000001.1  190513262-190513333 c
            1997-2067           JAXUCZ010000001.1  190512965-190513035 c
            2068-2363           JAXUCZ010000001.1  190512505-190512800 c
            2364-2433           JAXUCZ010000001.1  190512338-190512407 c
            2434-2580           JAXUCZ010000001.1  190511734-190511880 c
            2581-2653           JAXUCZ010000001.1  190511562-190511634 c
            2654-2844           JAXUCZ010000001.1  190511278-190511468 c
            2845-2974           JAXUCZ010000001.1  190510904-190511033 c
            2975-3096           JAXUCZ010000001.1  190510690-190510811 c
            3097-3303           JAXUCZ010000001.1  190510303-190510509 c
            3304-4590           JAXUCZ010000001.1  190508878-190510164 c
FEATURES             Location/Qualifiers
     source          1..4590
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q36"
     gene            1..4590
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /note="ataxin 2-like"
                     /db_xref="GeneID:361649"
                     /db_xref="RGD:1565868"
     exon            1..710
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     CDS             418..3636
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /note="isoform 1 is encoded by transcript variant 1;
                     ataxin-2-like protein"
                     /codon_start=1
                     /product="ataxin-2-like protein isoform 1"
                     /protein_id="NP_001123569.2"
                     /db_xref="GeneID:361649"
                     /db_xref="RGD:1565868"
                     /translation="MLKPQPPQQTSQPQQPPPTQQAVARRPPGGTSPPNGGLPGPLPA
                     TAAPPGPPTVVSPCLGPAAAAGSGLRRGAESILAAPAPQQHQERPGAVAIGSVRGQTT
                     GKGPPQSPVFEGVYNNSRMLHFLTAVVGSTCDVKVKNGTTYEGIFKTLSSKFELAVDA
                     VHRKASEPAGGPRREDIVDTMVFKPSDVLLVHFRNVDFNYATKDKFTDSAIAMNSKVN
                     GEHKEKVLQRWEGGDSNSDDYDLESDMSNGWDPNEMFKFNEENYGVKTTYDSSLSSYT
                     VPLEKDNSEEFRQRELRAAQLAREIESSPQYRLRIAMENDDGRTEEEKHSAVQRQGSG
                     RESPSLVSREGKYIPLPQRVREGPRGGVRCSSSRGGRPGLSSLPPRGPHHLDNSSPGP
                     GSEARGINGGPSRMSPKAQRPLRGGKTLSSPNNRPSGEASVPPTSAVGRMYPPRSPKS
                     AAPAPVSASCPEPPIGSAVASSASIPVTSSVVDPGAGSISPASPKLSLAPTDVKELPT
                     KEPSRSLEAQELARIAGKVPGLQNEQKRFQLEELRKFGAQFKLQPSSSSETGLDPFPS
                     RILKEEAKGKEKEVDGLLTSDPMGSPVSSKAESILDKEDKVPLAAVAGSEGPEQLQPP
                     CPSQTGSPPVGLIKGDDKEEGPVTEQVKKSTLNPNAKEFNPTKPLLSVNKSTSTPTSP
                     GPRTHSTPSIPVLTAGQSGLYSPQYISYIPQIHMGPAVQAPQMYPYPVSNSVPGQQGK
                     YRGAKGSLPPQRSDQHQPASAPPMMQAAAAAAGPPLVAATPYSSYIPYNPQQFPGQPA
                     MMQPMAHYPSQPVFAPMLQSNPRMLTSGSHPQAIVSSSTPQYPSAEQPTPQALYATVH
                     QSYPHHATQLHGHQPQPATTPTGSQPQSQHAAPSPVQAGQAPHLGSGQPQQNLYHPGA
                     LTGTPPSLPPGPSAQSPQSSFPQPAAVYAIHPHQQLPHGFTNMAHVTQAHVQTGVTAA
                     PPPHPGAPHPPQVMLLHPPQGHGGPPQGAVPPSGVPALSASTPSPYPYIGHPQGEQPG
                     QAPGFPGGADDRIREFSLAGGIWHGRAEGLQVGQDARVLGGD"
     exon            711..747
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            748..804
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            805..876
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            877..1027
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            1028..1152
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            1153..1244
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            1245..1445
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            1446..1621
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            1622..1732
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            1733..1924
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            1925..1996
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            1997..2067
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            2068..2363
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            2364..2433
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            2434..2580
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            2581..2653
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            2654..2844
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            2845..2974
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            2975..3096
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            3097..3303
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
     exon            3304..4590
                     /gene="Atxn2l"
                     /gene_synonym="RGD1565868"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggcgcctgc gcggctcctt ttccgcccta agggctagac cagtctgagc cacaactgga
       61 gcctcttctg ctttccggaa ctaaccgcct ggcggcgctc cccgcgcccc tcccccgccg
      121 gcgcttccgc ccgcgctcct ccctctctcc ttctccagcg acgcgcacgc gcgccaagcc
      181 ggctcgcgcc ctctcgctat ccaccggccc gcgacatccc cccctcccct tccgcctcgc
      241 ggcgcttcct cgcgccgccg tcttctcaat ccacccctga caccgcgggg ctccccccgc
      301 ccgccaacgg cgggtcccct gcttggcgat ctctctcgct tcccgcgctc tccagcaggg
      361 gcccagcctc aggccctctt tcccttccct ctaatttctc ttccggacgc tgccatcatg
      421 ttgaagcctc agccgccaca acagacctcc cagccccagc agccgccccc cacgcaacag
      481 gccgtggctc gccggcctcc cggcgggact agccctccca acggcggcct cccgggaccg
      541 ctgcccgcta ccgcggctcc cccggggcct cccacagtgg tctctccgtg cctggggcct
      601 gcagccgctg ccggcagcgg gctccgccgc ggagccgaaa gcatcttggc ggcgccagcg
      661 ccgcagcagc atcaagaacg gccaggggca gtggctatcg gcagcgtcag gggacagacc
      721 accggaaagg gacccccaca gtcaccagtg tttgaaggtg tctataacaa ttccaggatg
      781 ctgcatttcc tgacagctgt agtgggttct acctgtgatg taaaagtgaa aaatggcacc
      841 acttatgagg gcattttcaa gacgctgagc tcaaagtttg aactggcagt agatgcggta
      901 catcggaaag cctctgagcc agcaggtggg cctcgtcggg aagacattgt ggacaccatg
      961 gtgtttaaac caagtgatgt tctgcttgtc cacttccgaa atgttgactt caattatgct
     1021 actaaagaca agttcactga ctcagccatt gccatgaact ctaaggtgaa tggagaacac
     1081 aaagagaagg tgcttcagcg ttgggagggc ggtgacagca acagtgatga ctacgatctg
     1141 gaatccgata tgtctaatgg atgggatcct aatgagatgt tcaaatttaa tgaggagaac
     1201 tatggagtga agaccaccta tgacagcagt ctatcttctt acacggttcc cttagaaaag
     1261 gacaactctg aagagtttcg gcagcgggag cttcgcgcgg cccagttggc tcgggagatt
     1321 gagtctagtc cccagtaccg tctacggatt gccatggaaa atgacgacgg gcgaaccgag
     1381 gaggagaagc acagtgcagt tcagcggcag gggtccgggc gggagagccc cagcttggtg
     1441 tccagggaag ggaaatatat ccctctgcct caacgagttc gggaaggtcc ccggggagga
     1501 gttcgatgca gcagttctcg aggagggcgg cctggcctta gctctttgcc acctcgtggc
     1561 cctcaccatc ttgacaacag cagtcctggt cctgggtctg aggcacgtgg tatcaatgga
     1621 ggtccttccc gcatgtcccc caaggcacag cggcctctga gaggtggcaa gaccttatct
     1681 tcacccaaca ataggccttc tggagaagct tctgttcctc caacatctgc agtgggccgg
     1741 atgtaccctc cacggtctcc caagtctgct gcccctgccc cagtctcagc ttcctgtcct
     1801 gagcctccca ttggttcagc agtagcatcc tctgcctcca tccctgtgac atcatcagtt
     1861 gtggatcctg gagcaggctc tatttcccca gcatctccaa aactctccct ggcccctaca
     1921 gatgtaaaag aactcccaac caaggagccc agtaggagtt tggaagccca agagctggcc
     1981 cgcatagctg ggaaagtccc tggccttcag aatgaacaaa aacgctttca gttggaagaa
     2041 ctgaggaaat ttggggccca gtttaagctt caacctagta gctcctctga gacgggcctg
     2101 gatccatttc cttcccggat cttgaaagaa gaggccaaag gaaaggagaa agaagtggat
     2161 ggtctattga cttcagatcc tatgggatcc ccagtctcct ccaaggcaga atccatattg
     2221 gataaggaag acaaagtgcc cctggcagca gtagcggggt ctgaggggcc agaacagctc
     2281 caaccacctt gccccagcca aactggcagt cctccagtgg gcctcatcaa gggagatgac
     2341 aaagaggagg gcccggttac tgaacaagta aagaagtcta ctttgaaccc caatgccaag
     2401 gagttcaatc caacaaagcc tctgctgtct gtgaacaaat ctaccagtac tccaacttca
     2461 ccagggcccc gtactcattc aacaccttcc ataccggtgc tgacagcagg ccagagtggg
     2521 ctctacagtc cccagtacat ctcatatata cctcagatcc acatgggacc agctgtgcag
     2581 gcacctcaga tgtatccata tcctgtatcc aattcggtgc ctgggcagca gggcaagtac
     2641 cggggtgcaa aaggctcact tcccccccag cgctctgacc aacaccaacc agcctcagcc
     2701 cctccaatga tgcaggctgc tgctgctgct gctggcccac ccttggtggc tgccacacct
     2761 tattcctcct acatccctta caacccacag cagttcccag gccagcctgc catgatgcag
     2821 cccatggcac actacccttc acagccggtg ttcgccccta tgcttcaaag taatccacga
     2881 atgttgacat cgggaagcca tccccaggcc atcgtgtcat cctccactcc tcagtaccct
     2941 tctgcagagc agcctacccc ccaagccctt tatgccactg ttcaccagtc ctatccacac
     3001 catgccacgc agctccatgg ccaccagcct cagccggcca ccactcctac tgggagccaa
     3061 ccacaatccc agcatgcggc ccccagtccc gttcaggcgg ggcaggcccc acacctgggc
     3121 agtggacaac cacagcagaa tctgtaccat ccaggggccc taacaggcac gccaccttct
     3181 ctaccaccgg gaccttctgc ccagtcccct caaagcagct tcccccagcc agctgctgtg
     3241 tatgccatcc atccccacca gcagctgccc cacggcttca ccaacatggc ccatgttacc
     3301 caggcccatg tccaaactgg agtcacagca gccccgcccc cacaccctgg ggctccccac
     3361 ccgccccagg tgatgctgct gcaccccccc cagggccatg ggggcccccc ccaaggcgcg
     3421 gtgcccccga gtggggtgcc tgcactctca gcttccacac cctcacccta cccctacatc
     3481 ggacaccccc aaggtgagca gcctggccag gcgcctggat ttccaggagg agccgatgac
     3541 aggattcgtg agttctcgtt agctggggga atttggcatg gaagagctga ggggctgcag
     3601 gtggggcagg atgcacgggt tctgggtggg gattgagggg tcttggaggc agggctgtcc
     3661 cagagggcgc ccgccgaccc acacctgtct gtgaagtatg tagggtgggc agaagccaca
     3721 gtcgccgccg ccaggggctt gctcctggct ctgtcctttg cttccctccg tcctcgctca
     3781 gttgtgatcc agcagccccc ctccccactg cctccccagc tctcagtgac cccgactgtc
     3841 tcctgactta gccgaggtaa ggtcagcgca gcagacaggg ccagactggg gcgtgggggg
     3901 ctgagctggg caactgagta agggctctgg cctactggga aacagcgatt gacctgtgct
     3961 tctgacagcc ccctgagact cctcgaggag gccgctcctc cccacacccc cacaccccct
     4021 ggacgcattg acagagggac agctgctcgg gttctaatgc tcctgctctc tctctttccc
     4081 ctccaaccag ttcaatctca tccctcccag cagctcccct tccacccccc ggggaactga
     4141 agattgtcct ggccgcgacc tgagacctcc atgagtggag ggaagagtga tctatgtctc
     4201 ttcccccagc agctgggacc agtcctagcc ccgcccccaa cccctttccc ttggggagtt
     4261 ggggaattcc tgccaagcac cttgaacggg aggggtcctt caagtgggcc gggctggggt
     4321 ccagcggggg tgggggaggt tcctgctctg tccctgctgg gtcccaccca gtcttgtcct
     4381 cccatcctct catctattcc ccaccccgct ggagacggaa gatcttttat tttctattat
     4441 ttataacctc agacttgggc cccctgttct tctccattaa cttgagtgtc ctgtgtgaga
     4501 gaccgacaga cagatgcctc aaggactttt actttttatt acataaaaaa tttaaaaaaa
     4561 ataaaaaaat aaaattttaa actaacttaa
//
