LOCUS       NM_001107006            1462 bp    mRNA    linear   ROD 20-SEP-2024
DEFINITION  Rattus norvegicus ATP synthase mitochondrial F1 complex assembly
            factor 2 (Atpaf2), mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_001107006 XM_001075912 XM_220522
VERSION     NM_001107006.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1462)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 1462)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   3  (bases 1 to 1462)
  AUTHORS   Pagliarini,D.J., Calvo,S.E., Chang,B., Sheth,S.A., Vafai,S.B.,
            Ong,S.E., Walford,G.A., Sugiana,C., Boneh,A., Chen,W.K., Hill,D.E.,
            Vidal,M., Evans,J.G., Thorburn,D.R., Carr,S.A. and Mootha,V.K.
  TITLE     A mitochondrial protein compendium elucidates complex I disease
            biology
  JOURNAL   Cell 134 (1), 112-123 (2008)
   PUBMED   18614015
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473948.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_220522.4, XM_001075912.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ213754.1, FQ228793.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1462
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q22"
     gene            1..1462
                     /gene="Atpaf2"
                     /note="ATP synthase mitochondrial F1 complex assembly
                     factor 2"
                     /db_xref="GeneID:303190"
                     /db_xref="RGD:1305161"
     exon            1..294
                     /gene="Atpaf2"
                     /inference="alignment:Splign:2.1.0"
     CDS             135..1031
                     /gene="Atpaf2"
                     /codon_start=1
                     /product="ATP synthase mitochondrial F1 complex assembly
                     factor 2"
                     /protein_id="NP_001100476.1"
                     /db_xref="GeneID:303190"
                     /db_xref="RGD:1305161"
                     /translation="MGPPKPLGMMWRIYPRLRDRWRGLLDRPLGDPTVSLWPGPALRP
                     PARAYVPPTERKRFYQNVSISQGEGGFEINLDHRKLKTPQAKLFTVPSEALAIAVATE
                     WDSQQDTIKFYTMHLTTLCNTSLDNPTQRNKDQLIRAAVKFLDTDTICYRVEEPETLV
                     ELQKNEWDPIIEWAEKRYGMEIGSSTSIMGPSIPTQTREVLTSHLASYNMWALQGIEF
                     VVAQLKSMLLTLGLIDLRLTVEQAVLLSRLEEEYQIQKWGNIEWAHDYELQELRARTA
                     AGTLFVHLCSESSTVKHKLLQE"
     exon            295..339
                     /gene="Atpaf2"
                     /inference="alignment:Splign:2.1.0"
     exon            340..485
                     /gene="Atpaf2"
                     /inference="alignment:Splign:2.1.0"
     exon            486..583
                     /gene="Atpaf2"
                     /inference="alignment:Splign:2.1.0"
     exon            584..664
                     /gene="Atpaf2"
                     /inference="alignment:Splign:2.1.0"
     exon            665..777
                     /gene="Atpaf2"
                     /inference="alignment:Splign:2.1.0"
     exon            778..893
                     /gene="Atpaf2"
                     /inference="alignment:Splign:2.1.0"
     exon            894..1462
                     /gene="Atpaf2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgtaggtgtc atgacgaaga tggcggcgtg ctgaggaggc tgagggcttt gaacccttgg
       61 tgagaggttt ccgtacggaa ccagcgaggc gtttggggga ctctcttcgc tctattcctg
      121 tactgttttc acgtatgggt ccacccaaac ccttgggcat gatgtggcga atctaccccc
      181 ggctgaggga ccggtggcgc ggtctcttgg accggcctct cggtgacccc accgtttcat
      241 tgtggccggg gccagctctg aggcctccag cccgggccta cgtcccgcca acagaaagga
      301 agaggtttta tcagaatgtc agcatctcac agggtgaagg tggctttgag ataaacctgg
      361 accacagaaa gctgaaaact ccccaagcca agctttttac cgtccccagc gaggccctgg
      421 ctattgcggt ggccactgaa tgggactccc agcaggatac catcaagttc tacaccatgc
      481 acctgaccac attgtgcaat acatccttgg acaacccaac ccagcgaaac aaagatcagc
      541 tgatccgggc agctgtgaag tttctagaca cggacaccat ctgctacagg gtggaagaac
      601 cagagacatt agtggaactt caaaagaacg aatgggatcc catcatagag tgggctgaga
      661 aaaggtatgg tatggagatc ggctcctcta ccagcataat ggggcccagc atccctaccc
      721 agacccgaga ggtgcttact agccacttgg cctcttacaa catgtgggcc ctgcaaggga
      781 ttgaatttgt agtggcccag ctcaagtcca tgttgttgac tttgggcctg attgacttgc
      841 gcctgactgt ggaacaagct gtgctgctgt cacgcctgga ggaagagtac cagatccaga
      901 agtggggcaa cattgaatgg gcccatgact atgagctcca ggaactgcgg gctcgcactg
      961 ctgctggcac cctttttgtc cacctctgct cggaaagctc tacagtcaaa cataagctcc
     1021 tgcaagagtg aggcctgggg tgcacacact ggctggaagg aactgcacag gcacaggctt
     1081 gctgatgtgg gccttccttg gctgttggac ctgtgtatcc agtgatgctc ggctagccag
     1141 tacctattag gctccctcag cctatactaa ggctacccag tctgtacctg ggtcttccct
     1201 gacctgtgtg gcttggccat atatacaagc atcctgagat gccctggaga catagtgtgc
     1261 ctgacttgag gtcagacagc ttccgatgca gatgcccttg gcttgaccag tagtgaggaa
     1321 gggagacgag tgatatatat agagactttg tcttgaccct gattttatta aatatttttt
     1381 cattctggaa atatatcaag cctcattttc atttgagcct tggcatttct ccattcttct
     1441 tgttttatct gagctctgtc ac
//
