LOCUS       NM_001107959            3170 bp    mRNA    linear   ROD 22-SEP-2024
DEFINITION  Rattus norvegicus ATP synthase mitochondrial F1 complex assembly
            factor 1 (Atpaf1), mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_001107959 XM_001070312 XM_039109987 XM_233402
VERSION     NM_001107959.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3170)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On or before Jun 3, 2021 this sequence version replaced
            XM_039109987.1, NM_001107959.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.2143628.1,
                                           SRR26643289.15864.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-493               JAXUCZ010000005.1  134503164-134503656
            494-602             JAXUCZ010000005.1  134506173-134506281
            603-653             JAXUCZ010000005.1  134508441-134508491
            654-716             JAXUCZ010000005.1  134509094-134509156
            717-767             JAXUCZ010000005.1  134513193-134513243
            768-815             JAXUCZ010000005.1  134514449-134514496
            816-911             JAXUCZ010000005.1  134515626-134515721
            912-1019            JAXUCZ010000005.1  134518023-134518130
            1020-3170           JAXUCZ010000005.1  134527071-134529221
FEATURES             Location/Qualifiers
     source          1..3170
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q35"
     gene            1..3170
                     /gene="Atpaf1"
                     /note="ATP synthase mitochondrial F1 complex assembly
                     factor 1"
                     /db_xref="GeneID:313510"
                     /db_xref="RGD:1305417"
     exon            1..493
                     /gene="Atpaf1"
                     /inference="alignment:Splign:2.1.0"
     CDS             168..1214
                     /gene="Atpaf1"
                     /codon_start=1
                     /product="ATP synthase mitochondrial F1 complex assembly
                     factor 1"
                     /protein_id="NP_001101429.1"
                     /db_xref="GeneID:313510"
                     /db_xref="RGD:1305417"
                     /translation="MEQARGPGAEADAPEEEEGEAQEAMAAVVSAAGGACPAVLQVAG
                     LYRGLCAVRSRALGLGFVSPAQLRVFPVRRGSGLSSGGTDGGGVSELETNPFYDRYRD
                     KIQQLRRSDPAAFESRLEKRSEFRKQPVGHSKQSDFIRCVEQKTDALGKQPVSKGFTK
                     DKTLSSVFNVEMVKDKTGEEIKQIWQQYFSAKDTVYAVIPKEKFDVIWNRAQSCPTFL
                     CALPRRDGYEFFVGQWTGTELHFTALINIQTRGDAAASQLILYHYPELKEEKGIVLMT
                     AEMDSTFLNVAEAQCIANQVQLFYATDRKEIYGLVETFNFRPNEFKYMSVIAELEQSG
                     LGAELKCAQTQDKT"
     exon            494..602
                     /gene="Atpaf1"
                     /inference="alignment:Splign:2.1.0"
     exon            603..653
                     /gene="Atpaf1"
                     /inference="alignment:Splign:2.1.0"
     exon            654..716
                     /gene="Atpaf1"
                     /inference="alignment:Splign:2.1.0"
     exon            717..767
                     /gene="Atpaf1"
                     /inference="alignment:Splign:2.1.0"
     exon            768..815
                     /gene="Atpaf1"
                     /inference="alignment:Splign:2.1.0"
     exon            816..911
                     /gene="Atpaf1"
                     /inference="alignment:Splign:2.1.0"
     exon            912..1019
                     /gene="Atpaf1"
                     /inference="alignment:Splign:2.1.0"
     exon            1020..3170
                     /gene="Atpaf1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgggcagact cccgggagga gacgcgccac tacacccaca gagcgggtgg gctgaaccga
       61 gagccgccag ccctaagagt tgctgtccct gctccactcc agcacccgga accttgagca
      121 cgcggaactt cggtggcgga actcgggcct cgcggactta gagggcgatg gagcaggcgc
      181 gcgggccggg ggccgaggct gacgcgccag aggaggagga gggggaggcg caggaggcca
      241 tggcggctgt agtgtccgct gcgggtggag cgtgccccgc agtcctgcag gtggccggcc
      301 tctaccgagg cttgtgtgcg gtgcgcagcc gcgccctggg gctggggttc gtgtcacctg
      361 cacagttgcg cgtgttcccg gtgcgccggg gctcgggcct gtcctccggg ggaacagacg
      421 gcggtggggt cagcgagctg gaaactaacc ctttctacga ccgctaccgc gacaagatcc
      481 agcagctgcg caggtctgac ccagctgcct ttgagtcccg cctggagaag cgcagtgagt
      541 tccgaaagca gccagtgggg cactccaaac aaagtgattt tatcaggtgt gtggagcaga
      601 agacagatgc cttggggaaa cagcctgtga gcaaaggatt cactaaggac aagactctca
      661 gttcagtctt caatgttgag atggtgaagg acaaaaccgg agaggaaata aaacagattt
      721 ggcagcagta tttttcagca aaagacactg tctacgcagt tattcctaaa gagaagtttg
      781 atgtgatctg gaaccgggct cagtcctgcc caacatttct ttgtgcacta ccaagaaggg
      841 atggttatga gttctttgta ggacaatgga caggtacaga gctccacttc actgcactta
      901 taaatattca gacccgaggg gatgcagcag ccagccagct gattttatac cactatcctg
      961 aacttaagga agaaaagggc atagtgctga tgacagcaga aatggattcc acatttctga
     1021 acgttgccga ggcgcagtgc atcgccaatc aggttcagct cttctacgcc actgatcgga
     1081 aggagatcta tgggctagta gagaccttta acttcagacc aaatgagttc aaatatatgt
     1141 ctgtcatcgc tgaattggag caaagtggac ttggagcaga actgaaatgt gcccagaccc
     1201 aagataagac ttagagatat ctggattggc ccttcacagt gctgactcag tcctggatag
     1261 cctgaagccc acccacgccc ttgaattcca gagctcagca tctgcagcaa gcagtctgtc
     1321 aagagttact gtgtgtgcaa gaagtgattg tggacctgaa ccctactact tgatattcag
     1381 gaacaaagat atacaaatat tctgataatt acctctcagc ataagggttc ctgttcagtg
     1441 tttctggcct ttagaatgag aaacattcag agatgcatat gactattggc tgggttttat
     1501 ttcgtgtaat agtgcagttg cattctggcc gttttgacct catagctccc agttctgcgt
     1561 cttcataatt gtatgtagca ataagcttga agatcctaga gatgttggct ttatggactc
     1621 tttccatgca ccagtgagct ggctaaaacc ataacccaaa aatctggcca gactctaata
     1681 cagccagcga ttctcaccag aataaagact tgtagatgcc cctccagagt tgccttcaat
     1741 gtaactcagt gaattacggg tatactcaaa tagacaggta cagtgcctgc atactgttaa
     1801 actttagctt atggccctac tccctgaact ccgcctgtga gaagccaatg aatcactaca
     1861 gtgtaaataa aacctttttc taaggagatc attagatttg catgattaaa aaaataagtg
     1921 taatgtgaat tgggttcaaa tgttcccaga ttggacatag ggaatgcagc aataaaataa
     1981 gtctcgtttt cagttcctgt tacacagaat agtggaaact aagctttata ctgttggtgg
     2041 catccatgtc gtgggttaat tttatcagaa cttgtcttga ggctcagtga tttcttgaaa
     2101 caccagaaat aagcaagtta ttccccagca ccagaagcac atgtcgcttt gtggctccaa
     2161 gttcattggt gaaaaaggat ggtaggtcca taccaaagcc ctgggtgtcc cccagcatta
     2221 ttggctctcc ctgtaccaca cctgtcattt ggtcttaatc tgccaccaac tgatcttgtt
     2281 ggatgccacc aaatactgtg agtagaaact taagtagtgt tttcaattta ttgtatatgt
     2341 tcttctttac ggttgttttg ttttgttttg ttttgttttg ttttttaggg taggcctctc
     2401 ccaaagcgtt ttaagtaggg gtggtagttt gaataaaaat gacctccgta gggtcatgta
     2461 tttgaatgtt tagttgccag ggagtagaac catttgaagg tgtgtgtgtg tgtgtgtgtg
     2521 tgtgtgtgtg tgtgtgtgtg tgtgtctgtc tgtctgtctg tctgtctgtc tgtctgtctg
     2581 tctgtctgca cctgcttgtg gtccggatgt atctctcagc tatttctcca gtaccatgcc
     2641 tgcctgctgc catgctgtct gccatgatgg tagtggacta cgcctctgaa accgtaagct
     2701 agcctccaat taaatgcttt cttttgtaag agcggccttg gtcatgggat ctcttcacag
     2761 taatagaaca gtgactaagg aggcttggcc atcccattct tttctgaagc gagaaacata
     2821 atgtttactt aactgaagaa gctgtgctgt attttgggct tttctaaagg ttaagttcat
     2881 ctctaatgca gcttctagac cccactatgg tctcaagtgc gcattttgag aaatttgagt
     2941 cctatcaacc ctgccatttt ccttaaatgc ctttcaagct tctgaccgat atatgtgcca
     3001 agattcttag gcatttggta gggttgtttt tgtgggtgtc catttatgtc tgttttctct
     3061 ccagatagac ccagttctta gccatagaac atttccatga tgcctccact agatggtaaa
     3121 aacatgagag aaaaaaagaa ctaaccattt atttcatagt tcttcccagc
//
