LOCUS       XM_039106727            3638 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ATPase phospholipid transporting 9A
            (putative) (Atp9a), transcript variant X1, mRNA.
ACCESSION   XM_039106727
VERSION     XM_039106727.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106727.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3638
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3638
                     /gene="Atp9a"
                     /note="ATPase phospholipid transporting 9A (putative);
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 73 ESTs, 19 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 163 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:84011"
                     /db_xref="RGD:621421"
     CDS             167..3310
                     /gene="Atp9a"
                     /codon_start=1
                     /product="probable phospholipid-transporting ATPase IIA
                     isoform X1"
                     /protein_id="XP_038962655.1"
                     /db_xref="GeneID:84011"
                     /db_xref="RGD:621421"
                     /translation="MTDSIPLQPVRHKKRVDSRPRAGCCEWLRCCGGGEPRPRTVWLG
                     HPEKRDQRYPRNVINNQKYNFFTFLPGVLFSQFRYFFNFYFLLLACSQFVPEMRLGAL
                     YTYWVPLGFVLAVTIIREAVEEIRCYIRDKEMNSQIYSRLTSRGTVKVKSSNIQVGDL
                     ILVEKNQRVPADMIFLRTSEKNGSCFLRTDQLDGETDWKLRLPVACTQRLPTAADLLQ
                     IRSYVYAEEPNIDIHNFLGTFTREDSDPPISESLSIENTLWAGTVIASGTVVGVVLYT
                     GRELRSVMNTSDPRSKIGLFDLEVNCLTKILFGALVVVSLVMVALQHFAGRWYLQIIR
                     FLLLFSNIIPISLRVNLDMGKIVYSWVIRRDSKIPGTVVRSSTIPEQLGRISYLLTDK
                     TGTLTQNEMVFKRLHLGTVAYGLDSMDEVQSHIFSIYTQPSQDPPAQKGPTVTTKVRR
                     TMSSRVHEAVKAIALCHNVTPVYECNGVTDQAEAEKQFEDSCRVYQASSPDEVALVQW
                     TESVGLTLVGRDQSSMQLRTPGDQILNLTILQVFPFTYESKRMGIIVRDESTGEITFY
                     MKGADVVMAGIVQYNDWLEEECGNMAREGLRVLVVAKKSLTEEQYQDFEARYVQAKLS
                     VHDRSLKVATVIESLEMEMELLCLTGVEDQLQADVRPTLETLRNAGIKVWMLTGDKLE
                     TATCTAKNAHLVTRNQDIHVFRLVTNRGEAHLELNAFRRKHDCALVISGDSLEVCLKY
                     YEYEFMELACQCPAVVCCRCAPTQKAQIVRLLQERTGKLTCAVGDGGNDVSMIQESDC
                     GVGVEGKEGKQASLAADFSITQFKHLGRLLMVHGRNSYKRSAALSQFVIHRSLCISTM
                     QAVFSSVFYFASVPLYQGFLIIGYSTIYTMFPVFSLVLDKDVKSEVAMLYPELYKDLL
                     KGRPLSYKTFLIWVLISIYQGSTIMYGALLLFESEFVHIVAISFTSLILTELLMVALT
                     IQTWHWLMTVAELLSLACYIASLVFLHEFIDVYFIATLSFLWKVSVITLVSCLPLYVL
                     KYLRRRFSPPSYSKLTS"
ORIGIN      
        1 gccgtgtccg tcggtcgggc cgcgcgggcg gctccgcgcg tggcccggcg ctcgcgacct
       61 cgcccctgcg ctgcgggccc ggcccgcccg ctgccggcgc ctcctccccc tgccccgggg
      121 cggcgcggag gccgcgggga gcgcaggggg cgcggcgggc ggcgacatga cggacagcat
      181 cccgctgcag cccgtgcgcc acaagaagcg ggtggacagt aggccgcgcg cggggtgctg
      241 tgagtggctg agatgttgcg gtggagggga gcccaggccc cgtactgtct ggttgggaca
      301 ccccgagaag agggaccagc ggtaccctcg aaatgtcatc aacaaccaga agtacaattt
      361 cttcacgttt cttcccgggg tgttgttcag tcagttcaga tacttcttca acttctactt
      421 cctgcttctc gcctgctccc agttcgtccc cgagatgaga cttggcgctc tctacaccta
      481 ctgggttcct ctgggctttg tgctggctgt caccatcatc cgtgaggcag tggaggagat
      541 ccgatgctat attcgtgaca aggagatgaa ctcccagatc tacagccggc tcacgtcacg
      601 agggaccgtg aaggtgaaga gttcaaacat ccaggtggga gatctcatcc ttgtggaaaa
      661 gaaccagcgg gtgcctgctg acatgatctt cctgaggaca tcagagaaaa acgggtcctg
      721 cttcttgcgc acagatcagc tggatggaga gacagactgg aagcttcggc tccccgtggc
      781 ctgcacacag aggctcccca cagctgcgga cctcctgcag attcggtcgt atgtgtatgc
      841 tgaagagccc aacatcgaca ttcacaactt cctggggacc ttcaccaggg aagacagtga
      901 ccctccgatc agcgagagcc tgagcatcga gaacacgctg tgggccggca ccgtcatagc
      961 ctcaggcacg gttgtgggtg tcgttctcta cactggcaga gagctgcgga gtgtcatgaa
     1021 tacttccgat cccagaagta agattggcct gttcgacctg gaggtgaact gcctcaccaa
     1081 gatcctgttt ggtgcgctgg tggtggtgtc actggtcatg gtggctctgc agcacttcgc
     1141 cggccgctgg tacctgcaga tcatccgctt cctgcttctg ttttccaaca tcattcccat
     1201 cagcttgcgt gtgaacttgg acatgggcaa gatcgtgtac agctgggtga ttcgcaggga
     1261 ttccaaaatc cccgggactg tggtccgttc cagcacaatc cccgagcagc tgggcaggat
     1321 ctcctacttg ctcacagata agacagggac cctgactcag aacgagatgg tgttcaagcg
     1381 gttgcacctg ggtacggtgg cctacggcct ggactcgatg gacgaagtgc agagtcacat
     1441 cttcagcatc tacacccagc cgtcccagga cccaccggct cagaagggcc ccacagtcac
     1501 caccaaagtc cgaaggacca tgagcagccg ggtccacgag gccgtgaagg ccatcgcgct
     1561 ctgccacaac gtgacacctg tgtatgagtg caacggcgtg accgaccagg cggaggctga
     1621 gaagcagttt gaggattcct gccgtgtgta ccaggcatcc agcccagatg aggtggctct
     1681 ggtccagtgg acagaaagcg tgggactgac gcttgtgggt cgagaccagt cctccatgca
     1741 gctgaggacc cctggtgacc agatcctgaa tctcaccatc ctgcaggtct tcccgttcac
     1801 ctatgagagc aagcggatgg gcatcatcgt gcgggatgag tccacagggg agatcacctt
     1861 ctacatgaag ggagcggacg tcgtcatggc tggcattgtt cagtacaatg actggctgga
     1921 ggaggagtgt ggcaacatgg cccgggaggg actgcgtgtg ctggtggtgg ccaagaagtc
     1981 cctcacagaa gagcagtacc aagactttga agcgcgctac gtccaggcca agttgagcgt
     2041 acatgaccgc tctctgaagg tggccacggt gatcgagagc ctggagatgg agatggagct
     2101 gctgtgcctg acgggcgtgg aggaccagct gcaggccgac gtcaggccca cgctggagac
     2161 gctgcgcaat gccggcatca aggtttggat gctaacaggg gacaagctgg agacagccac
     2221 gtgcacagcc aagaacgcac atctggtgac cagaaaccaa gacatccatg ttttccgact
     2281 ggtgaccaac cgcggggagg cacacctgga gctcaacgcc ttccgcagga agcacgactg
     2341 tgccctggtc atctctggag actctctgga ggtttgcctc aagtactatg agtatgagtt
     2401 catggagctg gcctgccagt gcccggccgt ggtatgctgc cgctgtgccc ccacccagaa
     2461 ggcccaaatc gttcggctgc tccaggaacg caccggaaag ctcacctgtg cagtagggga
     2521 cggaggcaat gacgtcagca tgatccagga atcagactgc ggcgtgggcg tggagggcaa
     2581 ggaaggaaag caggcttcgc tggccgcgga cttctccatc acccagttca agcatctcgg
     2641 ccggctactc atggtgcacg gccggaacag ctacaagcgc tcggcggctc tcagccagtt
     2701 cgtcatccac aggagcctct gcatcagtac catgcaggcc gtcttctctt ccgtgttcta
     2761 ctttgcatcc gttcctctct accaaggctt cctgatcatc gggtattcta ccatctacac
     2821 catgtttccc gtgttttccc tggtcttgga caaagacgtg aagtcagaag ttgccatgtt
     2881 gtatcctgag ctctacaagg acctcctcaa ggggcggcca ctgtcctaca agacgttctt
     2941 aatttgggtg ttaatcagca tctatcaagg gagcaccatc atgtacgggg cgctgctgct
     3001 gttcgagtcg gagtttgtac acatcgtggc tatctctttc acgtcactca tcctcaccga
     3061 gctactgatg gtggcgctca ctatccagac gtggcactgg ctcatgacag tggccgagct
     3121 gctcagcctg gcctgctaca tcgcctccct ggtgttcctc cacgagttca tcgatgtcta
     3181 cttcattgct accctgtcgt tcctctggaa ggtgtccgtc atcaccctgg tcagctgtct
     3241 ccccctctac gtcctcaagt acctgcggag acggttctcc ccccccagct actccaagct
     3301 cacttcataa gctgcaaggc ggcagcaggg cctccggtct ctgcgctctc cctggaggag
     3361 gtcaagttca ggcgcatgag ccacctcagg tggatggcgc agtcacagct ggcacatgag
     3421 gctttaccga ggcgagactg ggcacctagc ggggttgtaa cacttgacag aatgggaggg
     3481 agggacctga gagctgtacc tgtcagaacc ttgggtgcta tgctgaattg agggtgaaga
     3541 tgtgggactg ggtggcccgt ctgaggtttg tgtgggtcac tgtgcaagct tctttatggt
     3601 ttgaacctct tgtcatgtga taaagtctct gtctcgaa
//
