LOCUS       XM_039110987            5113 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ATPase, class I, type 8B, member 5,
            pseudogene (Atp8b5p), transcript variant X1, mRNA.
ACCESSION   XM_039110987
VERSION     XM_039110987.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039110987.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5113
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5113
                     /gene="Atp8b5p"
                     /note="ATPase, class I, type 8B, member 5, pseudogene;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 EST, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     3 samples with support for all annotated introns"
                     /db_xref="GeneID:691125"
                     /db_xref="RGD:1587460"
     CDS             685..4260
                     /gene="Atp8b5p"
                     /codon_start=1
                     /product="phospholipid-transporting ATPase FetA isoform
                     X1"
                     /protein_id="XP_038966915.1"
                     /db_xref="GeneID:691125"
                     /db_xref="RGD:1587460"
                     /translation="MKYVKAFISEILWDCSWFCSAMYERENEQRQNEEEERILQANNR
                     RFNSLFEYPDNSIKTSKYSFFNFLPVNLFEQFQRLANAYFLILLFLQLIPQISSLAWY
                     TTVIPLIVVLSITGVKDAIDDVVKWLPGLPSLHLKRHQSDQQVNNRSVLILVNGRIEE
                     NKWRNVQVGDIIKLENDHPVTADVLLLSSSEPYGLTYIETADLDGETNLKVKQAVSAT
                     SDMEDNLELLSAFNGEVRCEPPNNKLDRFSGTLSYLGDTYFLDYERLLLRGCIIRNTD
                     WCYGLVVYTGPDTKLMQNSGRSTFKRTHIDHLMNVLVLWIFMLLGGMCFLLSIGHGIW
                     ESNRGYHFQAFLPWERYITSSAASSALAFWSYFIVLNTMVPISLYVSVEIIRLGNSYY
                     INWDRKMFYAPKNTPAQARTTTLNEELGQVEYVFSDKTGTLTENVMIFNKCSINGKTY
                     GYSYDENGQCVPKSPSNKVDFSYNHLADPKFSFYDKTLVEAVKSEDPLVYLFFLCLSL
                     CHTVMSEEKVEGELVYQAQSPDEGALVTASRNFGFVFHSRTPETITVIEMGRVRVYRL
                     LAILDFSNERKRMSVIVQTPEDRVMLFCKGADTIIYELLHPSCAALSDVTMDQLDDFA
                     SEGLRTLMVAYRELDKAFFQTWIKKHGEAWLTLENREKKLALVYEEIERDLVLLGATA
                     IEDKLQSGVPETIVTLNKAKIKIWVLTGDKQETAVNIAYSCRIFKDEMDAVFMVEGTD
                     RETVLEELRTARKKMKPESLLESDPINIYLARKSKMPFKAVDEVPNGSYGLVISGCSL
                     AYALESNTEFELLRTACMCKGVVCCRMTPLQKAQVVDLVKRYKKVVTLAIGDGANDIG
                     MIKAAHIGVGISGQEGMQATLSSDFSFCQFRYLQRLLLVHGRWSYNRMCKFLSYFFYK
                     NFAFTLVHFWYAFFNGFSAQTVYDIWFITFYNLIYTSLPILGLSLFEKDVNETWSLCY
                     PELYEPGQHNLYFNKKEFIKCLLHGIYSSFVLFFVPMGTVFNSERSDGKDISDFQSFS
                     LLVQTTLIWVMTMQIALSTTYWTMINHAFTWGSLGLYFCILFLLCSDGLCLMFPSVFN
                     FLGVARNGLNQPQMWLCLVLSSVLCLIPLMGYNFLKPILWPINVDKVLNRIHFCLKHP
                     LPPPVQIKVKHPGLRRSAYAFSHKQGFGALITSGKTLKSRAFTRR"
ORIGIN      
        1 gttctctgca agaacaagtg cttttaacca ctaagctatc tctctgggtc cttcctcttt
       61 tcaggtcaaa gctactcagt ggtcaccttg gcttctaagc tgaaacttaa gtctcaccag
      121 gagggcacac ccaccacata tccacacaca caatcctgca gctgactgaa ttattgccct
      181 tatagttccc tacatacttg tgcactgtgc ccctcggtgc tgctttacat tcttgggtcc
      241 ttgttaatgt ctagccaccc tttccactac cttctatatt agtctgtcac ctctggaagc
      301 cattgggact cgaccaactc tggcagcact ctccattgcc attctcccct cattagcatg
      361 tagttagccc ccggaaggat ctgaggattt catctctaca ggactcagcc atctcaggga
      421 tttaggaccc aactacttca aagccagact tttcatctgc tgtatcctgg ttagggcgag
      481 ggtagcagaa agacgggggc gtggctggag acgggggcgt ggctggagac gggggcgtgg
      541 ctggagacgc ccgtggcagc gcgtgggtgg gcaggtccag ccctgggcgg aagctgtggc
      601 tctgtggcac ctgcgcagaa aggtgcgtta agatggaggt tgctggagta gaaggctgtg
      661 aggcgacggt ggtgtttctc tgagatgaaa tacgtaaaag cttttatttc agagattcta
      721 tgggattgta gctggttctg ctctgcaatg tatgagagag agaatgaaca aagacagaat
      781 gaagaagaag aaaggatttt gcaggccaac aatagaaggt tcaactctct ttttgagtat
      841 ccggacaatt ccatcaagac atcaaagtat agtttcttta acttcctgcc cgtgaacctg
      901 tttgaacagt tccagagact tgcaaacgcc tatttcctca tcttgctgtt cctacagttg
      961 atccctcaga tctcctcgct ggcctggtac acaaccgtga tccctctgat cgtggtgctg
     1021 tccataactg gtgtgaagga cgccattgat gacgtggtga agtggcttcc cgggcttccc
     1081 tcactacacc taaaaagaca ccaaagtgac cagcaagtca acaaccgctc tgtgttgatc
     1141 ctggtgaatg gcaggattga ggagaacaaa tggaggaatg tccaagtggg ggacataata
     1201 aagctggaga atgaccatcc cgttacagca gatgtactgt tactctccag cagtgagccg
     1261 tatggtctga catacattga aaccgcagac ctggatggtg aaaccaacct aaaagtgaag
     1321 caggccgtct ccgctaccag tgacatggag gataacctgg agctgctgtc tgcctttaac
     1381 ggagaagttc ggtgcgaacc tcccaacaac aagctggaca ggttttccgg aacactgagc
     1441 tacctggggg acacctactt cctggactat gagcggctcc tgctccgagg ctgcatcatc
     1501 cggaacacag actggtgcta tggcttggtg gtttacacgg ggccagacac caaactaatg
     1561 cagaacagtg gacggtccac cttcaaacga acgcacatag atcatctcat gaacgtcctt
     1621 gtgctctgga ttttcatgct tctaggcgga atgtgttttc tgctgtcgat tggacatggc
     1681 atttgggaga gcaacagagg ttaccacttc caggcatttc tcccatggga gcgctatatt
     1741 acttcatcag ctgcgagctc tgccctcgct ttctggtcct acttcatagt gctcaacacc
     1801 atggtaccca tttccctcta tgtcagtgtg gaaataataa gactgggcaa cagttactat
     1861 atcaactggg atcgaaagat gttttatgcc ccaaagaaca ccccagcaca ggctcgtacc
     1921 accactctta atgaggagct tggccaagtt gaatatgtgt tctctgacaa aacaggaacc
     1981 ctgactgaga atgtgatgat tttcaacaaa tgttctatca atgggaagac ttatggttac
     2041 tcctacgacg aaaatggaca gtgtgtgcca aaatctccaa gtaacaaggt ggacttctct
     2101 tacaaccacc tagctgaccc taagttttca ttctacgaca agactttggt ggaagcggta
     2161 aagagtgaag acccactggt ctacttgttc ttcctctgcc tctcgctgtg ccacacggtg
     2221 atgtcagaag agaaggtgga aggtgagctg gtgtaccaag ctcagtcacc agatgaaggt
     2281 gccctggtta cggcttctag gaactttggc tttgtgttcc actcccgaac acctgagacc
     2341 atcacagtga tcgaaatggg gagagtccga gtttaccgtc tgctggctat tttggacttc
     2401 agcaatgagc gcaagaggat gtctgttatt gttcagacac ctgaagatcg ggtcatgttg
     2461 ttctgcaagg gagcagacac catcatctat gaactactgc atccgtcttg tgcagccctc
     2521 agcgatgtga ccatggacca gttagatgac tttgccagcg aaggccttcg caccctcatg
     2581 gtggcctacc gggagctgga taaggcattt ttccagacat ggattaaaaa gcatggcgaa
     2641 gcctggctga ctttagaaaa tcgggaaaaa aaactagctc tggtctacga agagattgaa
     2701 agagacttag tgttactagg ggccacagcc atagaagaca agcttcagag cggagtacct
     2761 gagacaattg tcaccctgaa caaagccaaa attaaaatat gggttctgac cggtgataag
     2821 caagagactg ctgtgaacat cgcctactcc tgtaggatat tcaaggatga aatggatgcg
     2881 gtgttcatgg tggaaggcac agatagggag actgttctgg aagaactcag gacagcaagg
     2941 aagaagatga aacctgagtc tctgctggaa tcagacccca taaacatcta ccttgccagg
     3001 aagtccaaga tgcctttcaa agcagttgac gaggtgccca atggcagcta cggcttggtc
     3061 atcagtggct gcagtctggc ttatgctcta gaaagcaaca cggagttcga gctgctgcga
     3121 acagcatgca tgtgcaaggg ggtggtctgc tgccggatga caccccttca gaaggcccaa
     3181 gtggtagacc tggtgaagag gtacaagaag gtggtgacac tggccatcgg ggatggggcc
     3241 aatgacatcg gcatgatcaa agctgctcat atcggggttg gcatcagcgg ccaggaaggg
     3301 atgcaggcca cgctcagcag tgacttttcc ttctgtcagt tccgctacct tcagcgccta
     3361 ctcttggtgc acggccgctg gtcttacaat cgcatgtgca agtttctcag ctacttcttt
     3421 tacaaaaact ttgcctttac cctggtgcac ttctggtacg ccttcttcaa cggcttctcc
     3481 gcacagacag tttacgacat ctggttcatc actttctaca atctcatcta cacctccctc
     3541 cccatcctgg gcttgagtct gtttgaaaag gatgtgaatg aaacatggag tctgtgctac
     3601 ccagagctgt atgaaccagg acagcacaac ctgtacttca acaaaaagga attcataaag
     3661 tgtttgctgc atggcatcta cagttccttt gtgctgttct ttgtccccat ggggaccgtg
     3721 tttaactcag agcgcagtga tgggaaggac atctctgact tccagtcctt ctccctgctg
     3781 gtgcagacca ccctgatctg ggtcatgaca atgcagatcg ctctgagtac cacctactgg
     3841 acaatgataa accacgcctt cacgtggggc agcctggggc tctacttctg catcttattc
     3901 ttactgtgca gtgacggcct gtgtttaatg ttccccagcg tcttcaactt cctaggtgtg
     3961 gccaggaacg gtctcaacca gccgcagatg tggttgtgcc tcgtcctcag ctcggtcctc
     4021 tgtttgatcc ctttgatggg atacaacttt ctcaaaccca tactctggcc tatcaatgtt
     4081 gacaaggttc tgaacaggat ccatttttgc ttgaagcatc cgttgccacc cccagtccag
     4141 atcaaagtaa aacacccagg ccttcgacgt tctgcctatg cgttctccca taaacagggc
     4201 tttggggccc tcatcacgtc tggcaagacg ctgaaatcca gagccttcac aagacgctag
     4261 aggtccttgt aaaacataga tgcccttggg gaaaccctca ttcagtcaac tgttgttctt
     4321 catccctttt atttatgcaa cttagtaaaa agggatcagg gcccctcaga aaccagggct
     4381 tcagcctctt cattccccag aaagctgtac ccagaaaagg taaggaaagc agtgtcagct
     4441 cctcagccag ggctgcagca ttccaagaac aggcaagtcc aagccccccg gattccctcc
     4501 agttcttaac ccagacaagc acacgcagat gccatgaagg ggcaggaaag aagaagggag
     4561 gtggggccta agaaccttag cctgggcccc gtcgctccca tacatagagc cactgtaacc
     4621 cttcccagac cccaggtgac cccaggtggc cccactcaga tactacccca gacttatctg
     4681 gaagattcag ggtgtggggt gagtattttg ttggccctag gagtgaagaa gggggtagct
     4741 atgaagagtt ggtcttaaga agatgaatga gtttctggac caaactggag gggaaaagga
     4801 agaaggagaa aaagaagaaa ggaaagaaaa cgaaggcagg tcctgcccgg ataggacagc
     4861 tcaaaattct gccttcttgc cctctgaccc ctctgatcta agaactgatg cttattcagg
     4921 ctttagaagc aagaggggaa caaactcggg ggttacaata ataatttctt aagggatata
     4981 agccactgtt ggtaagtgtt tgtcttctgt aaaagaattt tgagaagtaa ttatatgtac
     5041 tttgtatata cttgaaaaac tgtttctaag aagtttatgg agaaataaat ggagaaataa
     5101 attgttcatt ttg
//
