LOCUS       XM_039106843            7469 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ATPase phospholipid transporting 8B4
            (putative) (Atp8b4), transcript variant X3, mRNA.
ACCESSION   XM_039106843
VERSION     XM_039106843.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106843.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7469
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7469
                     /gene="Atp8b4"
                     /note="ATPase phospholipid transporting 8B4 (putative);
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 ESTs, 3 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 21 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:311396"
                     /db_xref="RGD:1306712"
     CDS             2074..5658
                     /gene="Atp8b4"
                     /codon_start=1
                     /product="probable phospholipid-transporting ATPase IM
                     isoform X1"
                     /protein_id="XP_038962771.1"
                     /db_xref="GeneID:311396"
                     /db_xref="RGD:1306712"
                     /translation="MMFCNEKKLLEVERVVKANDRDYNEKFQYADNRIHTSKYNILTF
                     LPINLFEQFQRVANAYFLFLLILQLIPEISSLTWFTTIVPLVLVISMTAVKDATDDFF
                     RHKSDNQVNNRQSEVLINSKLQNEKWMNVKVGDIIKLENNQFVAADLLLLSSSEPHGL
                     CYVETAELDGETNLKVRQALPVTSELGADISSLAKFDGIVICEAPNNKLDRFSGVLSW
                     KDSKHTLSNQKIILRGCVLRNTSWCFGMVLFAGPDTKLMQNSGKTKFKRTSIDRLMNT
                     LVLWIFGFLVCLGIILAVGNSIWESEVGNQFRTSLFWREGEKSSLFSGFLTFWSYVII
                     LNTLVPISLYVSVEVIRLGHSYFINWDRKMYYAAKAMPAEARTTTLNEELGQIEYIFS
                     DKTGTLTQNIMTFKKCSINGRVYAGEVLDDLDQKKEITKKKEAVDFSGKSKSERTLHF
                     FDHSLMESIELGDPKVHEFLRLLALCHTVMSEEDSAGQLVYQVQSPDEGALVTAARNF
                     GFIFKSRTPETITIEELGTPVTYQLLAFLDFNNIRKRMSVIVRNPEGQIKLYSKGADT
                     ILFEKLHPSNEDLLSLTSDHLSEFAGEGLRTLAIAYRELDDKYFKMWQKMLEDANSAI
                     AERDERISGLYEEIERDLMLLGATAVEDKLQEGVIETITSLSLANIKIWILTGDKQET
                     AINIGYACNVLTDAMDAVFVITGNTAVEVREELRKAKENLLGQNTSFSNGHAVYENKQ
                     RLELDSGAGETVTGEYALVINGHSLAHALESDVEKDLLELACVCKTVVCCRVTPLQKA
                     QVVELVKKHRNAVTLAIGDGANDVSMIKSAHIGIGISGQEGLQAVLASDYALAQFRYL
                     QRLLLVHGRWSYYRMCKFLCYFFYKNFAFTLVHFWFAFYCGFSAQTVYDQWFITLFNI
                     VYTSLPVLAMGVFDQDVSEQNSMDCPQLYEPGQLNLLFNKRRFFICVAHGIYTSLILF
                     FIPYGAFYNVAAEDGQHIADYQSFAVTVATSLVIVVSVQIALDTSYWTVVNHVFIWGS
                     VATYFSILLAMHSDGVFGIFPRQFPFVGNARRSLSQKFVWLVVLLTAVTSVMPVVVFR
                     FLKMHLYPSLSDQIRRWQKAQRKERPLRSRRPQTRRSSSRRSGYAFAHQEGYGELITS
                     GKNMRAKSPAPTSGLEKMLYSNTSWIGNLCKKTTDVVSGFSHDKTVKL"
ORIGIN      
        1 ttgactgatg tctgctgcac cgacctcagt cttccataaa ctatgcctgc ttgggcactg
       61 ttacaaagaa agactggatt ggtggagatg ggctttaaag cgaattcttt ctgtttttac
      121 tctaatactt cagaatttaa agccctcgca agtaagatac tactgaggac aaagtttcca
      181 gaagtcactc agtagtttaa tccgcacagc aagggtgatg tcatactctg aggtatggag
      241 taaagaatat ttctacaaaa gtaaaagtgt ttaaagttga aatggattta ttcacttgct
      301 ttgaagtaaa tgactccaag acatgttgga aggagacagt gaggagtgaa agtgaaagca
      361 tgaggccgtt gtggagtaaa gaaagtctgt gagggaaagt ctcctcatct tacaggagtt
      421 ttgaaaaaga gaagagcttg tggaggatct gaataagaga agagaaagtt acatggctct
      481 tctcccatag ttccctttat agtccacttt agctgcaccc ttaacactgg taatcagtta
      541 gcaccattct ctcagccatc tgacaaacca ataagggatt ttggtcctgt gaaaacagaa
      601 catgttgatt tagtccccag ggacaatttt catgtcttaa caaggtggct tagacttctt
      661 gattagtctt tctcttctgg ccagatgggg ccccagcagc atcagatgcc atcctcacag
      721 gtgttgtgtg ttctccctcc tgacgccatt taatgtctgc tctggctcct tttggtgact
      781 atcttgtgaa acaaagaagt gacgataaaa aggctgtgca tggtggaaat acctgtaatc
      841 ccagcaacca gggagctgag gcaggaggac tgttgtgagt ttgaggctag tctgggatat
      901 atagcaagtg gcagaccttc agatcctgta tcaaagtaga taaaaacaat aaataaggaa
      961 accagagaaa agtcccatgg gaggactgct ttgcctatgg tatattttcc agaggaaaga
     1021 ccagcattta aaacaatcct ttgtatttta ttagaaacgg attgcttctg gagtagagat
     1081 agtcattgcc tttagctgtg tactcgtcag tgagaccatc aggctgaaac aggtagtccc
     1141 agacacacag ctacacaaat gctcctgctt aaaatcagag agtctcaaaa caaaaagaaa
     1201 ggcgtgactg tgggaaagaa acttgagggg aggcggggag catggcaggg gtgagaaggt
     1261 gataagggaa ggttggggtg atcaaatgca ctacatatgt gtttagaatt gtcaaaagaa
     1321 cacatctaac cagcaagaat gctcctcctg agagctccaa gttctggcca ctcctccctt
     1381 ctttcccatg ctcttcaact tgctacgaca ccaaacgcat tcatcctctt ttgtcctaat
     1441 ctgcattaag ggtgtttagg agatagtcgt acatagaagg acagaggcta gcaagagaga
     1501 tgaaatactc ccaatccccc aggaacctca aacagggatg acagatccaa gccaccctgg
     1561 tgcgtgaggc ctagaaagaa taattgctaa aagagaggta tgtccacatc ccgtttctta
     1621 gggaaacaga aagcatcatt catgcattca tggtcagtaa acacatggag tagcatcgtg
     1681 agccaggcat gtgtcaggaa caaaaccatg ggccaggtga gggggttcct gtgccactgg
     1741 agtttgggaa gtaacgagaa gacaacgtag tagacaaata cagcctagag tgccatggac
     1801 tctgagatga acagtaccag gttttgtgga acacatcgga agtggctcat ggaggaagta
     1861 ccatatgagt tagtacatga gttgaagagg gtggggctga ggttacatgg ctataagtat
     1921 agggaagagg catcatgaag gtccccagat ggagaaaggc taagctgagt atttctgaag
     1981 tgcagacgtg aggagcaaac agaggagcgt gggcagtgag ggaaggaggg agaaaccagg
     2041 ccaacactca tgacgcggtg agaactcggg gtgatgatgt tctgcaatga gaagaagctc
     2101 cttgaagtgg agcgggtggt gaaagccaac gaccgtgact acaatgagaa gttccagtat
     2161 gcggataatc gtatccacac gtccaagtac aacattctca cattcttgcc aattaattta
     2221 tttgagcagt tccaaagggt ggcaaatgcc tatttccttt ttcttctgat actacagctc
     2281 attccagaaa tctcttccct gacatggttc accaccatcg tgcccctggt cctggtgatc
     2341 tcgatgacag ctgtcaagga tgccaccgac gactttttcc gtcacaagag tgataatcaa
     2401 gtgaataacc ggcagtctga ggtgctcatt aatagcaaac tgcagaatga aaaatggatg
     2461 aacgttaaag ttggagacat cattaaatta gaaaacaacc aatttgtcgc tgccgacctg
     2521 ctgctcctgt caagcagtga gccacacggt ctctgttacg ttgaaacagc agagcttgat
     2581 ggggaaacaa acctgaaagt tcgtcaagca ctacctgtca cctcagaact tggagcggat
     2641 atcagtagcc ttgcaaagtt tgatgggatc gtcatttgtg aggcgcctaa caacaagtta
     2701 gacagattct ctggggtcct ctcttggaag gacagcaagc acacgctcag caaccagaag
     2761 ataatcctga gaggctgcgt cctgaggaac accagctggt gctttgggat ggttcttttt
     2821 gcaggtccag acactaaact aatgcagaac agtggtaaga caaagttcaa aaggacaagc
     2881 attgacagac tgatgaacac cctagtcctg tggatttttg ggtttctggt atgcttggga
     2941 attattcttg cagtaggaaa ttcaatctgg gagagtgaag ttgggaacca gttcagaact
     3001 tccctcttct ggagagaagg cgagaagagt tccttgttct ctggattctt gacgttctgg
     3061 tcatatgtca tcatcctcaa cacgcttgtt cccatttcgt tatatgtgag tgtggaagta
     3121 atccgtctgg gacacagcta ttttataaat tgggaccgga agatgtatta tgctgcgaaa
     3181 gcaatgcctg ctgaagcccg gacgaccaca ctcaatgagg agctgggcca gattgaatat
     3241 attttctctg acaaaacagg aactctcacc caaaacatca tgacttttaa aaaatgttcc
     3301 attaatggaa gagtctacgc aggtgaagtg ctagatgacc tggaccagaa gaaagaaata
     3361 accaagaaaa aggaggctgt ggacttctcg ggcaaatcaa aatcagaaag aacactccat
     3421 ttctttgacc acagtctgat ggaatccatt gagcttggag accccaaagt ccatgaattc
     3481 cttcgcttac ttgctctctg ccatactgta atgtcagagg aggacagcgc aggacaactg
     3541 gtttaccaag ttcaatcacc cgatgaagga gctctagtta ctgctgctag aaattttggg
     3601 ttcattttta agtctcgaac cccagagaca attacaatag aagaattggg aacgccagtt
     3661 acttaccagt tactcgcctt tttggatttc aacaacatcc ggaaaaggat gtctgtcata
     3721 gttcgaaacc cagaaggaca gataaaactt tattccaaag gagcagatac tattttgttt
     3781 gaaaaactcc atccttccaa tgaagacctg ctgtccttga catcagacca tctcagtgaa
     3841 tttgcagggg aaggtctccg aactttagca attgcttatc gagagcttga tgacaagtac
     3901 tttaaaatgt ggcagaagat gcttgaagat gcaaattctg ccatcgctga gagggatgaa
     3961 cggatatctg ggctgtatga agaaattgaa agggatttga tgcttttagg tgccacagct
     4021 gtagaagata aattacaaga aggtgttatt gaaacaatta caagtctatc actagccaat
     4081 attaagatct ggattctaac aggagacaaa caagaaactg ccatcaatat tggttatgcc
     4141 tgcaatgtgc tcacagatgc catggatgct gtgtttgtga taacggggaa cacggccgtg
     4201 gaagtgcgag aagaactcag gaaagcaaag gaaaatttgc ttggacaaaa cacgagtttt
     4261 tccaatggac atgcggttta tgaaaacaag caacggttgg agttggactc gggtgcaggg
     4321 gagactgtga caggagaata tgccttagtc ataaacggcc acagtttggc ccatgcccta
     4381 gaaagcgatg tcgagaaaga tcttttggag ctcgcctgcg tgtgtaagac ggtggtctgc
     4441 tgcagggtca ctccactcca gaaagctcaa gtagtggagt tggtaaaaaa gcacagaaat
     4501 gctgtgacat tggccatcgg cgatggggcc aacgatgtca gcatgattaa aagtgcccac
     4561 attggtattg gcatcagtgg ccaggaagga ctgcaagcgg tcttagccag cgactatgcg
     4621 ttggctcagt ttagatatct ccagcggctg cttcttgttc acggaaggtg gtcctattac
     4681 aggatgtgca agtttttatg ctatttcttc tacaagaact ttgcgttcac cctcgtgcat
     4741 ttctggttcg ccttctactg tggtttctcg gcccagactg tctacgacca gtggttcatc
     4801 actcttttta acatcgttta cacatcgctc cccgttttag ccatgggagt ttttgatcag
     4861 gacgtaagtg agcagaacag catggactgc cctcagctct acgaacctgg acaactgaat
     4921 ctccttttta acaagcgaag atttttcatc tgtgtggcac atggaattta cacctcatta
     4981 atccttttct tcattcccta cggcgccttt tacaatgtgg ctgcagaaga tgggcaacac
     5041 attgctgact accagtcctt tgcagttact gtggccacat ctttggtcat tgtggtcagc
     5101 gtccagatag ctttggacac gagttattgg accgtggtta atcacgtctt catctggggc
     5161 agcgttgcta cctatttctc cattttactt gctatgcaca gtgatggtgt ctttggaatc
     5221 ttccctcgtc agttcccctt tgttggaaat gcacggcgct ccctgagcca gaaatttgtt
     5281 tggctcgtgg ttctcttgac agcagtgaca tcagtcatgc cagttgtggt gttcagattt
     5341 ctgaagatgc atttataccc aagcttgagt gatcagatcc gccggtggca gaaggctcag
     5401 agaaaggaaa ggcccctgcg aagccgaagg cctcagaccc gcaggtcaag ctccagaaga
     5461 tccggatacg cgtttgctca ccaagaggga tacggagagc tcatcacatc tggaaaaaat
     5521 atgcgagcta aaagtccagc cccaacatca gggctggaaa agatgcttta tagtaacaca
     5581 agctggattg gaaatttatg taagaaaacc acagacgtgg tgagcggctt tagtcatgat
     5641 aagacagtga aactgtgagt cgagagggaa cttgaccaca agccgtcttt tcacctcatc
     5701 tggggctgag cttaggctgc tcgggggcca agagcagggc agatcacatt gcttaactta
     5761 aatccgtggc ctccagctgc caacgcctgt cagatagtga tgttttctgc aggattcctt
     5821 gccagatggg cactgtccaa tctgtgattc tgtggaccaa ggcctcatgg gacaagtaca
     5881 gatttttatt aacttaaaca ccaatccata caaactttga atcttattta tggaaaagag
     5941 acttgtaaat tagcatctat gttagatggt ccttaggtat gtaaaagggt acgttccaat
     6001 ggtgtgtttc aaccaaaaaa cgcatgtcga cagatatgcc atgtatgtga agagctactt
     6061 ttccaaatgc aattacagaa tttaaagcat gcagtgtggt gctctcagat tgagagtcag
     6121 cctttctcta gacttgagct cccctttcca ggacaacaac gccttccatg cccgaacaat
     6181 gcattaaaac gtctgtctgt tatacaaaca ggggcaaaat aaagcaactg aatgtccctg
     6241 gagagggact gcaaacacgg tctgatttat agagtgttca gactgttccc catggggaca
     6301 caatcccaga gtggctcctc taacgtccct aatgtttcaa tgacttgtgt gacaatgtca
     6361 gtagcaatct gctgcacgca gaactgtcag agggatagaa cactgccctt tattgacagt
     6421 gttccatgca gcccgtgggc aaatgctgct gacagattcc attttaaaac ttgagaatta
     6481 aaaggaagcg agtcaatggg cagtctctac tgttaaatag tccactcagg agtagaccat
     6541 tgagactcag ttccttttag caactagctg tcctgtttat gactcaaaca tacatctaaa
     6601 tgcatagatg catagatgaa gctgattttt acaacagaca ttgcagccca atttggggat
     6661 tgataggcga gtcactagca tatttccttt ataaggttct gtgttcaaat cgctgctgac
     6721 gcccacttac ctctgtgatg gggaggtgat gtgcctttcc cgagactcag tttcctcctc
     6781 tacaaaatga ggatgcacta cctacctcac atggttgatg accatcaagc acaaatattc
     6841 gaatcattag aaacatagtt ctcacaagtg ctgtagaagt tagggtttag ctagctcatc
     6901 atcagagccg cagagcaact ggagagacat caggacctgg gacacccgtc gagagtgggg
     6961 ctgtcaaaga aatgaggctg ctaagaagga tagaaagcga ataaaactgt agcctgggga
     7021 atagatttat cctcaaggag gtaaagcaaa ccaaatcgaa aacggcaaac aaacactcat
     7081 ggtttccaaa catcagcctt tagcactcta gccttctttc tctggttccc agtcaattgc
     7141 tgatcaacca aaactacttt ccacaaagag cttttaatct tgtgccatct tgatagatga
     7201 tgtgctgaga tggtgttaat aggtcagtgt cccctgccca gttccttttg atttctaagc
     7261 ctaatttttc ctaatatata atctgtaggc agtagcctaa tacctgaagc ctttacccag
     7321 agcaaatgct tgtagctctt cctttttcta tacatatcta cctaggaaaa aaaggtgaga
     7381 ttttcatgtc taaaaatcag cttcagtgtg cttatgtttt ataacaattt tgaaaacttt
     7441 gaaaatttcc aataaatctg ttgccatca
//
