LOCUS       XM_039092726            8088 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ATPase phospholipid transporting 8A1
            (Atp8a1), transcript variant X1, mRNA.
ACCESSION   XM_039092726
VERSION     XM_039092726.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051349.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039092726.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8088
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8088
                     /gene="Atp8a1"
                     /note="ATPase phospholipid transporting 8A1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 55 ESTs, 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     14 samples with support for all annotated introns"
                     /db_xref="GeneID:289615"
                     /db_xref="RGD:1309619"
     CDS             16..3645
                     /gene="Atp8a1"
                     /codon_start=1
                     /product="phospholipid-transporting ATPase IA isoform X1"
                     /protein_id="XP_038948654.1"
                     /db_xref="GeneID:289615"
                     /db_xref="RGD:1309619"
                     /translation="MGPEEEATTLSFGACLLGKHLLSTCCLLTGVEMSNTPSRAPGSS
                     YSGTGRLTHNQRARKPPGYEKTDDVSEKTSLADQEEVRTIFINQPQLTKFCNNHVSTA
                     KYNVITFLPRFLYSQFRRAANSFFLFIALLQQIPDVSPTGRYTTLVPLLFILAVAAIK
                     EIIEDIKRHKADNAVNKKQTQVLRNGAWEIVHWEKVNVGDIVIIKGKEFIPADTVLLS
                     SSEPQAMCYIETSNLDGETNLKIRQGLPATSDIKDIDSLMRISGRIECESPNRHLYDF
                     VGNIRLDGHGTVPLGADQILLRGAQLRNTQWVHGIVVYTGHDTKLMQNSTSPPLKLSN
                     VERITNVQILILFCILIAMSLVCSVGSAIWNRRHSGKDWYLHLHYGGASNFGLNFLTF
                     IILFNNLIPISLLVTLEVVKFTQAYFINWDLDMHYEPTDTAAMARTSNLNEELGQVKY
                     IFSDKTGTLTCNVMQFKKCTIAGVAYGHVPEPEDYGCSPDEWQSSQFGDEKTFNDPSL
                     LENLQNNHPTAPIICEFLTMMAVCHTAVPERDGEKIIYQAASPDEGALVRAAKQLNFV
                     FTGRTPDSVIIDSLGQEERYELLNVLEFTSSRKRMSVVVRTPSGKLRLYCKGADTVIY
                     ERLAESSKYKEITLKHLEQFATEGLRTLCFAVAEISESDFEEWRAVYQRASTSVQNRL
                     LKLEESYELIEKNLQLLGATAIEDKLQDQVPETIETLMKADIKIWILTGDKQETAINI
                     GHSCRLLRRNMGMIVINEGSLDGTRETLSRHCTTLGDALRKENDFALIIDGKTLKYAL
                     TFGVRQYFLDLALSCKAVICCRVSPLQKSEVVEMVKKQVKVITLAIGDGANDVSMIQT
                     AHVGVGISGNEGLQAANSSDYSIAQFKYLKNLLMVHGAWNYNRVSKCILYCFYKNIVL
                     YIIEIWFAFVNGFSGQILFERWCIGLYNVMFTAMPPLTLGIFERSCRKENMLKYPELY
                     KTSQNALDFNTKVFWVHCLNGLFHSVILFWFPLKALQYGTVFGNGKTSDYLLLGNFVY
                     TFVVITVCLKAGLETSYWTWFSHIAIWGSIALWVVFFGIYSSLWPAVPMAPDMSGEAA
                     MLFSSGVFWVGLLSIPVASLLLDVLYKVIKRTAFKTLVDEVQELEAKSQDPGAVVLGK
                     SLTERAQLLKNVFKKNHVNLYRSESLQQNLLHGYAFSQDENGIVSQSEVIRAYDTTKQ
                     RPDEW"
ORIGIN      
        1 tggagaatct tcaaaatggg gcccgaggag gaggccacca ctttgtcgtt tggggcgtgt
       61 ctattgggca aacatttgtt aagtacctgc tgtttgctga ctggtgtaga gatgagtaac
      121 acaccatcta gggctcccgg cagctcctat tccggtacag ggaggctgac tcataaccag
      181 agagccagaa aacctcctgg ttatgagaag acagatgatg tttcagaaaa gacctctctg
      241 gctgatcaag aggaagtgag aaccatattc atcaaccagc ctcagctgac aaaattctgc
      301 aacaaccacg tcagtactgc aaaatacaac gtcatcacct tccttccgag attcctctat
      361 tctcagttca gaagagcggc taattccttc tttctcttta ttgccctgct ccagcaaatt
      421 cctgatgtgt cgccaacagg tcgttacaca acactggttc ctctcttgtt tattttagct
      481 gtggcagcta tcaaagagat aatagaagat attaaacggc acaaagccga taatgccgtg
      541 aacaagaaac agacacaagt tttgagaaat ggcgcttggg aaattgttca ctgggaaaag
      601 gtaaatgttg gagatatagt tataataaaa ggcaaagagt ttatacctgc tgacactgtc
      661 cttctctcgt caagtgagcc ccaggccatg tgctacatcg agacatccaa cttagatggt
      721 gaaaccaacc tgaaaattag acaaggttta ccagcaacat cggatatcaa agacattgac
      781 agtttaatga gaatttctgg cagaatcgag tgtgaaagcc caaaccgaca tctctatgat
      841 tttgttggga acataaggct tgatggacat ggcacggttc ccctgggagc agaccagatc
      901 cttcttcgag gggctcagtt gagaaacact cagtgggttc acgggatagt tgtctacact
      961 ggacacgaca ccaagctgat gcagaattcc acaagtccac cgcttaaact ctccaatgtg
     1021 gagcggatta caaatgtgca aattctgatt ttattctgca tcttaatcgc catgtctctt
     1081 gtgtgctctg tgggctcagc catttggaac cgaaggcatt ctgggaaaga ctggtatctc
     1141 catctacact atggtggcgc tagtaatttt gggctgaact tcctgacttt cattatcctt
     1201 ttcaacaacc tcatccccat cagcttgctg gtcacattag aagtggtgaa atttacccag
     1261 gcatacttca taaattggga tctcgacatg cactatgagc ccacggacac tgcagcaatg
     1321 gctcggactt ctaatctaaa tgaggaactt ggccaggtta aatacatatt ttccgacaaa
     1381 accgggaccc tgacgtgcaa tgtgatgcag ttcaagaagt gcaccatcgc gggcgtggct
     1441 tacggccatg tccctgaacc tgaggattat gggtgctcgc ccgatgaatg gcagagctca
     1501 cagtttggag atgagaaaac ctttaatgat ccgtcgttgc tggaaaatct tcagaataac
     1561 catccaaccg cacctatcat ctgtgaattt ctcacaatga tggccgtctg ccacacagct
     1621 gtaccagaga gagacgggga gaagatcatt tatcaggcag cgtcgccaga cgagggagca
     1681 ctggtcagag ccgccaagca gttgaatttt gtcttcactg gaagaactcc tgactctgtc
     1741 atcatagatt cactggggca ggaagagaga tatgaattgc tcaatgtcct agagttcacc
     1801 agctctagga aaaggatgtc agtggtggtt cgcactccat ccgggaagct acggctttac
     1861 tgcaaaggag ctgacacggt aatttatgaa cgacttgcag agagttcaaa gtacaaagaa
     1921 attaccctaa aacacttgga acagttcgct acagaagggc tcaggacttt gtgttttgct
     1981 gtggccgaga tttctgagag tgactttgag gaatggcggg ccgtttacca gcgcgcatcc
     2041 acgtcggtgc agaacaggtt gctgaagctg gaggagagct acgagctcat cgaaaagaat
     2101 cttcagctac ttggagctac ggccattgag gacaaattac aggaccaagt gcctgaaacc
     2161 atagaaactc taatgaaggc tgacatcaaa atatggatcc ttactgggga caagcaagaa
     2221 actgccatta atattggaca ctcctgtaga cttctgagga ggaacatggg aatgatcgtt
     2281 ataaacgaag gctctcttga cggcacaagg gaaacgctca gccgccactg caccaccctt
     2341 ggagacgctc tccggaagga gaatgatttc gctctcataa tcgatgggaa gaccctcaaa
     2401 tatgccttaa ccttcggagt ccggcagtat ttcctggact tagctctgtc ctgcaaagct
     2461 gtcatttgct gcagggtttc tcctcttcag aagtctgagg ttgttgagat ggttaagaaa
     2521 caagtcaaag tcatcacgct tgccatcgga gacggggcaa atgacgtcag catgatacag
     2581 acggcccacg ttggtgtggg gattagcggc aatgaaggtt tgcaggcagc caactcttca
     2641 gattattcca ttgctcagtt caaatatttg aagaatttgt tgatggttca cggtgcctgg
     2701 aattacaata gagtctccaa gtgtatcctg tactgcttct acaagaacat cgtgctgtac
     2761 atcatcgaga tctggtttgc ctttgtcaat ggcttttctg gacagatcct ctttgaaagg
     2821 tggtgtatag ggctctataa tgtgatgttt acagcaatgc ctcccctgac gctcggaata
     2881 tttgagagat catgccgaaa ggagaacatg ttaaagtatc ctgagctgta caaaacgtcc
     2941 cagaatgctc tggacttcaa taccaaggtt ttctgggttc attgtttgaa cggcctcttc
     3001 cactcagtta ttctgttttg gttcccacta aaagcccttc agtatggcac ggtatttgga
     3061 aatgggaaaa cctcagatta cctgcttctg ggaaactttg tttatacttt tgtagtgata
     3121 actgtgtgcc tgaaagctgg gctggaaacc tcctattgga catggttcag ccacatcgcc
     3181 atctggggca gcatcgcgct ctgggtggta ttctttggga tctactcatc tctgtggcct
     3241 gccgttccca tggcccccga catgtctgga gaggcagcca tgctcttcag ctctggagtc
     3301 ttctgggtgg gcctgctctc tatccccgtg gcgtccttgc tcctggatgt gctgtacaaa
     3361 gtcatcaaga ggacagcctt taaaacattg gtggatgaag ttcaggagct cgaagcaaaa
     3421 tctcaagacc caggcgcagt cgtacttggc aaaagcctca cggagagggc acagctgctc
     3481 aaaaatgtct ttaagaagaa ccacgtgaat ctgtaccgct ctgagtcctt acaacagaac
     3541 ctgctccacg gctatgcttt ctctcaagat gaaaatggca tcgtctcaca gtctgaagtg
     3601 attagagcct atgataccac gaaacagagg ccagatgagt ggtgattggc agacctaagc
     3661 caccgccccc ccccccccgc tgtgtctctt tttttgagga gcgctgtcac agtctaaggt
     3721 catcactgca acctgctgac caattccagt ctggtccctg gagagaaaag gtggatctga
     3781 gctcatctca cagatggatt tcaaggacat aagtgctatg tgactgctgt aacaccatcg
     3841 tccttggatg tcctcaagta cctgctgagg ctttgtaaac caatactgga aattaccttg
     3901 tttcttgcca gagtgctttc tcaaaatggg gacaggtcag tgttcacaag ccgtccctct
     3961 ggggctgtaa ctattgttca ttggatcaac caccagtcaa tcaaccattt aaaagaaaca
     4021 acaacggctc agagacgatg tcaagggaag gactctcgat atccagactt agagtacagg
     4081 atatgctgga ataagccagt tcactctact gagcccttct aaacaaggca ttaatacatg
     4141 tttgtgtcaa agagtgtctt gctaaatgtt tgccaaagac gtccagtgtt tgtgtttctc
     4201 attcagtcgt catttgccca gaaatttaaa agaaagtatc ctcacagtac ctctgtatga
     4261 tctgcatgct tgactcttca aacatgagtg cgacttaaaa atctgagcat ttccaggcgt
     4321 ttgctactaa aatctgtgat gttgcacctt cggccttaca accgcttccc tgtctccctg
     4381 tcgtttgtgt tcttcatttg ttctagtcgg agggacgtgt gtccgtgtaa ccgttgcttt
     4441 gacactgact aatttttttc ttttctaatt gtactgtctg tcatttctga tgaactttag
     4501 actcctttag acgttcctaa aaactatctg gcttctgctg tgtattgagt gatgtggctt
     4561 ggtcttcagt tttccccctc ctaagaaaat tgcccttaca tatttatgtg ggatttccac
     4621 agacctttgc atgggctttt tgtcatgtac ataggctcag cttttgtcct gtgctgtttg
     4681 ttcctcactg tgcgctccca ctggagacga tatatgtagc acagtcggtc tcatggtgac
     4741 tacccacatg cttaaacctg aaaattcttt cacagttccc tcagccaaca ccccccgaag
     4801 caagtcgcat accgcttatt gacacgagac aaatacgtag cccgtttccc tcattttaag
     4861 ggcataccta tttgctcaag cctaaaacct tacagtcaat gaatacttct caccgtgagt
     4921 agggttcgct gatacatttt caaatatgtg ttctctctga ttagtttggc atctccatga
     4981 aatctcctgg gaaaaaaaat gcctattttg ctaccaacag taaatggtga aggggctgtt
     5041 taaaaaccac acccagtttt ctacagtttt tatggtattt ttttcatctt aaaagataaa
     5101 aaataaaggg gggagatcta gttttcagat acacttcgga gattgaaaca aactcttctg
     5161 ccttctactc caacgcctgt ttgcctttat gtggattacc agcaaaatag acctttaaat
     5221 gtgtgcgagg actagcttga gaagggggtt tctccatgtt accccactaa atcatttcat
     5281 tgttttcctc cctttctctt ggtctgaatt taaaattaga ctgtgtgtct cttccttctc
     5341 taaatctgtt gctagttacc aatgcatctc cgcattccct gaaataagag gttctaaaaa
     5401 ttcacataat tctaaaggga gcagagtgga catactcaca tctcaaacta tcctgtttat
     5461 tagagcttag atcagccaac acagaatcaa aatgtctaac agaaccacac acatagaatc
     5521 taagctgatc ttccagattg tgaggctgta gactgagccg tctaccagct gaatctggag
     5581 aatggattct cctcagcctc ctgctggtga caattgaggt cataaccccc aaaatggcag
     5641 gttatccgag aaaggcttgc tcccctctgc tccagctatc agaggtatct gtctccagat
     5701 tcctcacatc agaacatcgt aaatgagaat gggattttct gacctctgca tggaaatcta
     5761 aagtcatcct tttaccctga atcatgaatt attttggtgg aattcttcct catgaggaca
     5821 ctcacagtta gtcagttata tatcataccc tgaaaatgag actctctatg ccttttgtcg
     5881 ctggatcctg tgtttgaatg acaggcatta acttgggctc tctggtctta agtttgggag
     5941 agcacaggga gtggccattt cgataaaact tgaaatagag tcttgctatt gcagcaagtt
     6001 cattaatcct cgagtttcta aactttgtca gctggggaaa aggcacatgg ttttaccatg
     6061 gacttgaatg gctgcgctca aagtgacttt aagcctatgt tttctgaaat aaacagcata
     6121 taactccaat ttaaaagtcc ccaataggga ggggactcag gtaaatgctg acatgactgc
     6181 tttgtaacat atacaatcca gaaaatacta tttgtagcag aaaacctcct tactttagaa
     6241 ttgaaaagct gggaggtgaa tcattcacgc tgggttggga tatcgcacag tctcgtagag
     6301 cacagacttt ctccgtgtgt tagatataca cctcacaatt cactggtgtc tcacacctga
     6361 aggatgctct attaggggag gtattagcag gaaagcaatg ttctggggaa cgtaggacac
     6421 ttaacctagt aaatgtgcct cttggctggg accccactca gtgttccctg tgaaacagca
     6481 tccgcagcca ggagaactta ctggattgct ctctctctca ccccggccgg tgaagggaga
     6541 ctgtcaataa gggggccatg gagtgtgtta tcgttaaaga gtcagggagt ccttttcctt
     6601 tccaacaggc aaactggatt ctagaaataa cctgcgtgtt gtctcagcat ttaatgatat
     6661 attttaactt ttcagttcac tgtcccagat agctggtgtg atgtccacag gttaatttgt
     6721 tctatactta gcgccacact cataacctgt gactgagaaa tgccctttcg gaaaacaaat
     6781 gctagtcaga aagccacgga tggcatcatt ttaaatcagt gtgtaactat tagaaagcta
     6841 cctgttcatc agacgtttgg ttgttgatgg ttcctggtct tataattaaa ctacaaaatt
     6901 tatcaaagaa atgccccact cattcacccc atggtgagca agtgtgtagg attcctctgt
     6961 ccgtggctta caataacacc ttgtggcttc tgtgcctctt aaatgctttg taataatgag
     7021 tatttctgga ctatttcata aacatatcat agtctgattt ttctcacatt aaaataaaac
     7081 acttgtgaaa cttagttata ctttgctgtg ttttaattaa ccttcaacag ttattaaagt
     7141 ggaatgtaag ttaaatttta agaaaaggaa ataaatgccc ttcgtgtttc atactgattt
     7201 attttctgta ggagaacaac tgtttgagtt ttttggtgtg tgtgtgtctg tgtgtgaggt
     7261 tttttttttt tatagattta tggtttgcat gaattaatat ttaagatgat tcaggtaaat
     7321 gcatggcttt tgtgtaaatc ctcatattta tttctgtctt gtgaaacttc gccacggcct
     7381 aagtagaatt gaagcgtcag tggacacatt aatcggtcct ccacacaact ttttttcttt
     7441 taaataaatg ggttgtttta caagtttcaa caaatttagc tgaatccttt gtatttaatt
     7501 gaatcttctg tttagcttgc ctccaagaac tctttagaaa gttcacaaaa cttctcagca
     7561 aataaatctt ccttaagtag gaagaaaggt ggactggcct gtgtgctcac tttgaattaa
     7621 cagcgacttt cctttggtaa gtatgctcca gtggagatga gattcccagt catagactag
     7681 aagccataaa tgtagccagt gccctctgta gcctcttcgg gctcacttct caccttctca
     7741 agtgtatgac gttagagtaa gaaggcagcc ttggaaggca gctgtgaaaa gccgcagttt
     7801 gctttaaaaa taaaatcgac attcagctcc gtggaaaagc cattcctgcc aaaactgctg
     7861 taaagattgt ggcactgcat gagtggttct ctcaggtctg tgtatcctga tgtttgatgc
     7921 actgtgtttt ctacatagtt acaaatgttg agtaaaatcc atttctatgc actgttccct
     7981 gtcatcagcc ttttgtgaat gtgcatgttt taaactgcaa attttaaaca ttttgtcctc
     8041 taattgttac taaaaagaga aaataaactt taccattaca taaaggaa
//
