LOCUS       NM_001398986            1959 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus ATPase H+ transporting V1 subunit H (Atp6v1h),
            transcript variant 3, mRNA.
ACCESSION   NM_001398986
VERSION     NM_001398986.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1959)
  AUTHORS   Boyken,J., Gronborg,M., Riedel,D., Urlaub,H., Jahn,R. and Chua,J.J.
  TITLE     Molecular profiling of synaptic vesicle docking sites reveals novel
            proteins but few differences between glutamatergic and GABAergic
            synapses
  JOURNAL   Neuron 78 (2), 285-297 (2013)
   PUBMED   23622064
REFERENCE   2  (bases 1 to 1959)
  AUTHORS   Gonzalez-Begne,M., Lu,B., Han,X., Hagen,F.K., Hand,A.R.,
            Melvin,J.E. and Yates,J.R.
  TITLE     Proteomic analysis of human parotid gland exosomes by
            multidimensional protein identification technology (MudPIT)
  JOURNAL   J Proteome Res 8 (3), 1304-1314 (2009)
   PUBMED   19199708
REFERENCE   3  (bases 1 to 1959)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   4  (bases 1 to 1959)
  AUTHORS   Schroder,B., Wrocklage,C., Pan,C., Jager,R., Kosters,B.,
            Schafer,H., Elsasser,H.P., Mann,M. and Hasilik,A.
  TITLE     Integral and associated lysosomal membrane proteins
  JOURNAL   Traffic 8 (12), 1676-1686 (2007)
   PUBMED   17897319
REFERENCE   5  (bases 1 to 1959)
  AUTHORS   Geyer,M., Yu,H., Mandic,R., Linnemann,T., Zheng,Y.H., Fackler,O.T.
            and Peterlin,B.M.
  TITLE     Subunit H of the V-ATPase binds to the medium chain of adaptor
            protein complex 2 and connects Nef to the endocytic machinery
  JOURNAL   J Biol Chem 277 (32), 28521-28529 (2002)
   PUBMED   12032142
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ212744.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760393 [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-183               JAXUCZ010000005.1  19270858-19271040   c
            184-328             JAXUCZ010000005.1  19269562-19269706   c
            329-431             JAXUCZ010000005.1  19265229-19265331   c
            432-521             JAXUCZ010000005.1  19260878-19260967   c
            522-635             JAXUCZ010000005.1  19257196-19257309   c
            636-740             JAXUCZ010000005.1  19247875-19247979   c
            741-838             JAXUCZ010000005.1  19228726-19228823   c
            839-1031            JAXUCZ010000005.1  19220449-19220641   c
            1032-1210           JAXUCZ010000005.1  19212265-19212443   c
            1211-1336           JAXUCZ010000005.1  19209609-19209734   c
            1337-1438           JAXUCZ010000005.1  19202380-19202481   c
            1439-1612           JAXUCZ010000005.1  19197403-19197576   c
            1613-1959           JAXUCZ010000005.1  19176849-19177195   c
FEATURES             Location/Qualifiers
     source          1..1959
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q12"
     gene            1..1959
                     /gene="Atp6v1h"
                     /gene_synonym="CGI-11; SFD; SFDalpha; SFDbeta; VMA13"
                     /note="ATPase H+ transporting V1 subunit H"
                     /db_xref="GeneID:297797"
                     /db_xref="RGD:1562450"
     exon            1..183
                     /gene="Atp6v1h"
                     /gene_synonym="CGI-11; SFD; SFDalpha; SFDbeta; VMA13"
                     /inference="alignment:Splign:2.1.0"
     exon            184..328
                     /gene="Atp6v1h"
                     /gene_synonym="CGI-11; SFD; SFDalpha; SFDbeta; VMA13"
                     /inference="alignment:Splign:2.1.0"
     exon            329..431
                     /gene="Atp6v1h"
                     /gene_synonym="CGI-11; SFD; SFDalpha; SFDbeta; VMA13"
                     /inference="alignment:Splign:2.1.0"
     exon            432..521
                     /gene="Atp6v1h"
                     /gene_synonym="CGI-11; SFD; SFDalpha; SFDbeta; VMA13"
                     /inference="alignment:Splign:2.1.0"
     exon            522..635
                     /gene="Atp6v1h"
                     /gene_synonym="CGI-11; SFD; SFDalpha; SFDbeta; VMA13"
                     /inference="alignment:Splign:2.1.0"
     exon            636..740
                     /gene="Atp6v1h"
                     /gene_synonym="CGI-11; SFD; SFDalpha; SFDbeta; VMA13"
                     /inference="alignment:Splign:2.1.0"
     exon            741..838
                     /gene="Atp6v1h"
                     /gene_synonym="CGI-11; SFD; SFDalpha; SFDbeta; VMA13"
                     /inference="alignment:Splign:2.1.0"
     exon            839..1031
                     /gene="Atp6v1h"
                     /gene_synonym="CGI-11; SFD; SFDalpha; SFDbeta; VMA13"
                     /inference="alignment:Splign:2.1.0"
     exon            1032..1210
                     /gene="Atp6v1h"
                     /gene_synonym="CGI-11; SFD; SFDalpha; SFDbeta; VMA13"
                     /inference="alignment:Splign:2.1.0"
     exon            1211..1336
                     /gene="Atp6v1h"
                     /gene_synonym="CGI-11; SFD; SFDalpha; SFDbeta; VMA13"
                     /inference="alignment:Splign:2.1.0"
     exon            1337..1438
                     /gene="Atp6v1h"
                     /gene_synonym="CGI-11; SFD; SFDalpha; SFDbeta; VMA13"
                     /inference="alignment:Splign:2.1.0"
     exon            1439..1612
                     /gene="Atp6v1h"
                     /gene_synonym="CGI-11; SFD; SFDalpha; SFDbeta; VMA13"
                     /inference="alignment:Splign:2.1.0"
     exon            1613..1959
                     /gene="Atp6v1h"
                     /gene_synonym="CGI-11; SFD; SFDalpha; SFDbeta; VMA13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gctgctcacg tgcccagacg ctgctgtcac tttgcagctg ttccggcttt ttccgtgaga
       61 gcctcttaac gtctgtcgcg gagtcgcctt cccattgctc tgggctttcc gtggccactg
      121 aggcttcgga gctcgacccg cacctgcctg cccttgtggc cctcactccc cgaggctatc
      181 caggtctgtg aaacattcaa aatcataaag tttagatgac caagatggac attcgaggtg
      241 ccgtggatgc tgctgtccca actaacatca ttgcagccaa ggctgctgaa gttcgtgcca
      301 acaaagtgaa ctggcagtcc tatcttcagg ggcagatgat ttctgctgaa gattgtgaat
      361 ttattcaaag gttcgaaatg aagagatgtt ctgaggagaa gcaagagatg cttcaaactg
      421 aaggcagcca gtgtgctaaa acgtttataa atctgatgac acacatctcc aaagaacaga
      481 cagtgcagta catactgacc atggtcgacg acatgctgca ggaaaatcac cagcgtgtca
      541 gcattttctt tgactatgca aaacgaagca agagcactgc ctggccatac tttctgccaa
      601 tgttgaatcg ccaggacccc tttactgttc atatggcagc aagaattatt gccaagttag
      661 cagcctgggg aaaggaactc atggaaggca gtgacttaaa ttactacttc aattggataa
      721 aaactcagtt gagttcacag agttctcagt atgtgcagtg tgttgctggc tgtctgcagc
      781 tgatgctccg ggtcaatgag taccgttttg cctgggtgga agcagatggg gtgaactgta
      841 taatgggcgt tttgagtaac aagtgtggtt ttcaacttca atatcaaatg attttttcaa
      901 tatggcttct ggcattcagt cctcaaatgt gtgaacacct tcgtcgctat aacatcattc
      961 ctgttctgtc agacatcctt caagaatctg tcaaagagaa agtaacaaga atcattcttg
     1021 cagcattccg taatttctta gaaaaatcaa cggaaagaga aactcgccaa gagtatgctc
     1081 tggctatgat tcaatgcaaa gtcctaaaac agttggagaa tttggagcag cagaagtatg
     1141 atgatgaaga tatcagtgaa gacatcaaat ttcttttgga aaaacttggt gagagtgtcc
     1201 aggaccttag ctcatttgat gaatacagtt cagaacttaa atctggaagg ttggaatgga
     1261 gtcccgtaca caagtctgag aaattttgga gagaaaatgc tgtgaggtta aatgagaaga
     1321 actatgaact cttgaaaatc ttgacaaaac ttctggaggt atcagatgat ccacaagttt
     1381 tagctgttgc tgctcatgat gttggagaat atgtccggca ttatccccgg ggcaaacggg
     1441 ttattgagca gctcggtggg aagcagctgg tgatgaacca catgcaccat gaagaccagc
     1501 aggtccgcta caatgctctt ctggctgtgc agaagctcat ggtgcacaac tggtatgtct
     1561 cgatgtctat ctcacctgca catggctctg taaactctca catgcttatc ctggagtatc
     1621 ttggtaaaca gctccagtcg gagcagcccc agactgctgc tgctcgaagc tgaactgact
     1681 tcttcagcct ttctgcacct ccaatggacc actggagtga gaacctcagt ctttagggtc
     1741 aaaagcaaat agtttttaat ttaatggcaa cttctcttct gttgtatagc tcttcccaat
     1801 ggtaattcct gggggaataa aagtgtttgc ttgttaagtt gtataaaagt aggtgctgtg
     1861 tgtatctaga gaaatattac tgttacttat attctttatg atttttgtat ttattgttct
     1921 ctggaaatga atataattaa aggattctca ctccaaata
//
