LOCUS       NM_053884                642 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ATPase H+ transporting V1 subunit F (Atp6v1f),
            mRNA.
ACCESSION   NM_053884
VERSION     NM_053884.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Abbas,Y.M., Wu,D., Bueler,S.A., Robinson,C.V. and Rubinstein,J.L.
  TITLE     Structure of V-ATPase from the mammalian brain
  JOURNAL   Science 367 (6483), 1240-1246 (2020)
   PUBMED   32165585
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Gonzalez-Begne,M., Lu,B., Han,X., Hagen,F.K., Hand,A.R.,
            Melvin,J.E. and Yates,J.R.
  TITLE     Proteomic analysis of human parotid gland exosomes by
            multidimensional protein identification technology (MudPIT)
  JOURNAL   J Proteome Res 8 (3), 1304-1314 (2009)
   PUBMED   19199708
REFERENCE   3  (bases 1 to 642)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   4  (bases 1 to 642)
  AUTHORS   Smith,A.N., Francis,R.W., Sorrell,S.L. and Karet,F.E.
  TITLE     The d subunit plays a central role in human vacuolar H(+)-ATPases
  JOURNAL   J Bioenerg Biomembr 40 (4), 371-380 (2008)
   PUBMED   18752060
REFERENCE   5  (bases 1 to 642)
  AUTHORS   Peng,S.B., Crider,B.P., Tsai,S.J., Xie,X.S. and Stone,D.K.
  TITLE     Identification of a 14-kDa subunit associated with the catalytic
            sector of clathrin-coated vesicle H+-ATPase
  JOURNAL   J Biol Chem 271 (6), 3324-3327 (1996)
   PUBMED   8621738
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Nov 26, 2020 this sequence version replaced NM_053884.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: U43175.1, BQ199972.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-202               JAXUCZ010000004.1  59033020-59033221
            203-642             JAXUCZ010000004.1  59035541-59035980
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q22"
     gene            1..642
                     /gene="Atp6v1f"
                     /gene_synonym="Atp6s14"
                     /note="ATPase H+ transporting V1 subunit F"
                     /db_xref="GeneID:116664"
                     /db_xref="RGD:621552"
     exon            1..202
                     /gene="Atp6v1f"
                     /gene_synonym="Atp6s14"
                     /inference="alignment:Splign:2.1.0"
     CDS             45..404
                     /gene="Atp6v1f"
                     /gene_synonym="Atp6s14"
                     /EC_number="7.1.2.2"
                     /note="V-ATPase subunit F; V-ATPase 14 kDa subunit;
                     vacuolar proton pump subunit F; ATPase, vacuolar, 14 kD;
                     ATPase, H transporting, lysosomal V1 subunit F; ATPase, H+
                     transporting, lysosomal V1, subunit F"
                     /codon_start=1
                     /product="V-type proton ATPase subunit F"
                     /protein_id="NP_446336.1"
                     /db_xref="GeneID:116664"
                     /db_xref="RGD:621552"
                     /translation="MAGRGKLIAVIGDEDTVTGFLLGGIGELNKNRHPNFLVVEKDTT
                     INEIEDTFRQFLNRDDIGIILINQYIAEMVRHALDAHQRSIPAVLEIPSKEHPYDAAK
                     DSILRRAKGMFTAEDLR"
     exon            203..642
                     /gene="Atp6v1f"
                     /gene_synonym="Atp6s14"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggggcatcac tgctgtttgg ggagccttct gccgggccga caggatggcg ggcaggggta
       61 aactaatcgc agtgattgga gacgaggaca cggtgactgg tttcctgttg ggcggcatag
      121 gggagcttaa caagaaccgc caccctaatt tcctggtagt ggagaaggat accaccatca
      181 atgaaatcga agacactttc aggcagtttc taaacaggga tgacatcggc atcattctca
      241 tcaaccagta catcgcagag atggttcggc acgccctcga tgcccaccag aggtccattc
      301 cagccgtcct ggagatcccg tccaaggagc atccctacga cgcagccaaa gactccatcc
      361 tgcgcagggc caagggcatg ttcactgctg aagacctgcg ctagggctgc tcagccctta
      421 accctcctct cgcttccagg cctctcccag tttgccaccc tctatttaag tttcaagcct
      481 tggtttccag cccctccctt cctcttcact gagtggttcc taagctgttg gggttctgat
      541 gttcaggtcc aggctgggta gggaaagaaa ggccaaccat ctctccacta cctatgccat
      601 tgagcagtat cattgttaac attaaaggaa tattctctcc ga
//
