LOCUS       NM_199386               1379 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus ATPase H+ transporting V1 subunit D (Atp6v1d),
            mRNA.
ACCESSION   NM_199386 XM_216742
VERSION     NM_199386.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1379)
  AUTHORS   Abbas,Y.M., Wu,D., Bueler,S.A., Robinson,C.V. and Rubinstein,J.L.
  TITLE     Structure of V-ATPase from the mammalian brain
  JOURNAL   Science 367 (6483), 1240-1246 (2020)
   PUBMED   32165585
REFERENCE   2  (bases 1 to 1379)
  AUTHORS   Chen,Y., Wu,B., Xu,L., Li,H., Xia,J., Yin,W., Li,Z., Shi,D., Li,S.,
            Lin,S., Shu,X. and Pei,D.
  TITLE     A SNX10/V-ATPase pathway regulates ciliogenesis in vitro and in
            vivo
  JOURNAL   Cell Res 22 (2), 333-345 (2012)
   PUBMED   21844891
REFERENCE   3  (bases 1 to 1379)
  AUTHORS   Gonzalez-Begne,M., Lu,B., Han,X., Hagen,F.K., Hand,A.R.,
            Melvin,J.E. and Yates,J.R.
  TITLE     Proteomic analysis of human parotid gland exosomes by
            multidimensional protein identification technology (MudPIT)
  JOURNAL   J Proteome Res 8 (3), 1304-1314 (2009)
   PUBMED   19199708
REFERENCE   4  (bases 1 to 1379)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
REFERENCE   5  (bases 1 to 1379)
  AUTHORS   Smith,A.N., Francis,R.W., Sorrell,S.L. and Karet,F.E.
  TITLE     The d subunit plays a central role in human vacuolar H(+)-ATPases
  JOURNAL   J Bioenerg Biomembr 40 (4), 371-380 (2008)
   PUBMED   18752060
REFERENCE   6  (bases 1 to 1379)
  AUTHORS   Schroder,B., Wrocklage,C., Pan,C., Jager,R., Kosters,B.,
            Schafer,H., Elsasser,H.P., Mann,M. and Hasilik,A.
  TITLE     Integral and associated lysosomal membrane proteins
  JOURNAL   Traffic 8 (12), 1676-1686 (2007)
   PUBMED   17897319
REFERENCE   7  (bases 1 to 1379)
  AUTHORS   Kennell,J.A., Richards,N.W., Schaner,P.E. and Gumucio,D.L.
  TITLE     cDNA cloning, chromosomal localization and evolutionary analysis of
            mouse vacuolar ATPase subunit D, Atp6m
  JOURNAL   Cytogenet Cell Genet 92 (3-4), 337-341 (2001)
   PUBMED   11435709
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Apr 8, 2021 this sequence version replaced NM_199386.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC063177.1, FQ214434.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840115, SAMN12840129
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-201               JAXUCZ010000006.1  103405146-103405346 c
            202-319             JAXUCZ010000006.1  103401283-103401400 c
            320-399             JAXUCZ010000006.1  103396995-103397074 c
            400-467             JAXUCZ010000006.1  103395517-103395584 c
            468-512             JAXUCZ010000006.1  103394880-103394924 c
            513-616             JAXUCZ010000006.1  103393514-103393617 c
            617-683             JAXUCZ010000006.1  103392991-103393057 c
            684-762             JAXUCZ010000006.1  103391852-103391930 c
            763-1379            JAXUCZ010000006.1  103389778-103390394 c
FEATURES             Location/Qualifiers
     source          1..1379
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..1379
                     /gene="Atp6v1d"
                     /note="ATPase H+ transporting V1 subunit D"
                     /db_xref="GeneID:299159"
                     /db_xref="RGD:735119"
     exon            1..201
                     /gene="Atp6v1d"
                     /inference="alignment:Splign:2.1.0"
     CDS             161..904
                     /gene="Atp6v1d"
                     /EC_number="7.1.2.2"
                     /note="ATPase, H+ transporting, lysosomal 34kDa, V1
                     subunit D; ATPase, H+ transporting, lysosomal V1 subunit
                     D"
                     /codon_start=1
                     /product="V-type proton ATPase subunit D"
                     /protein_id="NP_955418.1"
                     /db_xref="GeneID:299159"
                     /db_xref="RGD:735119"
                     /translation="MSGKDRIEIFPSRMAQTIMKARLKGAQTGRNLLKKKSDALTLRF
                     RQILKKIIETKMLMGEVMREAAFSLAEAKFTAGDFSTTVIQNVNKAQVKIRAKKDNVA
                     GVTLPVFEHYHEGTDSYELTGLARGGEQLAKLKRNYAKAVELLVELASLQTSFVTLDE
                     AIKITNRRVNAIEHVIIPRIERTLAYIITELDEREREEFYRLKKIQEKKKIIKEKSEK
                     DLERRRAAGEVMEPANLLAEEKDEDLLFE"
     exon            202..319
                     /gene="Atp6v1d"
                     /inference="alignment:Splign:2.1.0"
     exon            320..399
                     /gene="Atp6v1d"
                     /inference="alignment:Splign:2.1.0"
     exon            400..467
                     /gene="Atp6v1d"
                     /inference="alignment:Splign:2.1.0"
     exon            468..512
                     /gene="Atp6v1d"
                     /inference="alignment:Splign:2.1.0"
     exon            513..616
                     /gene="Atp6v1d"
                     /inference="alignment:Splign:2.1.0"
     exon            617..683
                     /gene="Atp6v1d"
                     /inference="alignment:Splign:2.1.0"
     exon            684..762
                     /gene="Atp6v1d"
                     /inference="alignment:Splign:2.1.0"
     exon            763..1379
                     /gene="Atp6v1d"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agcggaagtg ggaaccggtt tcctggttgc ctcttagcaa cgcacggggt caagtgacac
       61 cgtcagctga ctcgggtgaa ggaaggctct gtggtaacag ttctggaggt gttgcggtcc
      121 cgattgtccc actggggacc cgagccgagt caccgtcaga atgtcgggca aagaccggat
      181 tgaaatcttc ccttcgcgaa tggcacagac catcatgaag gctcggttaa aaggagcaca
      241 gactggtcga aacctcctga agaaaaagtc tgatgcctta actcttcgat ttcgacagat
      301 cctgaagaag ataatagaga ctaagatgct gatgggtgag gtgatgagag aagctgcctt
      361 ctcattggct gaggccaaat tcacagcagg ggacttcagc accacagtta tacaaaatgt
      421 aaataaagcc caggtgaaga tccgagcaaa gaaagacaat gtagcaggtg tcaccttacc
      481 agtgtttgaa cattaccacg aaggaactga cagctatgaa ctaaccggtt tagccagagg
      541 tggggagcag ctggcgaaac ttaagcggaa ttatgccaaa gcagtggaac tactggtgga
      601 actggcttcc ctgcagactt cctttgttac tctggatgaa gccattaaga taaccaacag
      661 gcgtgtaaat gctattgagc atgtcatcat tccccggatt gaacgcaccc ttgcttatat
      721 catcacagaa ctggatgaga gagagcgaga agaattctat aggttaaaga aaatccagga
      781 gaagaaaaag attatcaagg agaaaagcga gaaggacttg gagcggcgga gagcagctgg
      841 agaggtgatg gagcctgcca acctcctggc ggaagagaag gacgaggacc tgctgttcga
      901 gtagctgccc gctgctccct tcaggctgag catcatttaa ctcagtgtgc aggttcggta
      961 tgtgcaggta tttattttgg cagaagagtt catctggctg taagatttat cagaatgctg
     1021 tgtgagacca tttttcctgc atcataattc agcaacctga gatttgtaaa acccacccag
     1081 cacttacaga atctccccag tgaaagagtc ataccatcct atttatacta gtttgactga
     1141 tgtgtttaaa actttaggaa atacttacta taaacattca tggtctcagg caaatgctga
     1201 gcagccttcc ttcctaccca cttgtaaacc ttggcactgt tgtctgaggc tgtgcagcca
     1261 ttgtgttact gtggactcaa ctctatgcct acttttcttt gcacgatgtg tctgtgtgta
     1321 atggaagtgg ttctgcccat ttaaatatga ctcatgaaca gagtaaaatg atttaaaaa
//
