LOCUS       NM_001191843            1153 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ATPase H+ transporting accessory protein 1 like
            (Atp6ap1l), mRNA.
ACCESSION   NM_001191843 XM_342169
VERSION     NM_001191843.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1153)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000002.1.
            
            On Jul 17, 2010 this sequence version replaced XM_342169.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.172533.1,
                                           SRR26360181.2738831.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-125               JAXUCZ010000002.1  23800096-23800220   c
            126-166             JAXUCZ010000002.1  23794401-23794441   c
            167-228             JAXUCZ010000002.1  23794059-23794120   c
            229-446             JAXUCZ010000002.1  23793244-23793461   c
            447-497             JAXUCZ010000002.1  23779588-23779638   c
            498-738             JAXUCZ010000002.1  23775995-23776235   c
            739-1153            JAXUCZ010000002.1  23772724-23773138   c
FEATURES             Location/Qualifiers
     source          1..1153
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q12"
     gene            1..1153
                     /gene="Atp6ap1l"
                     /gene_synonym="RGD1564936"
                     /note="ATPase H+ transporting accessory protein 1 like"
                     /db_xref="GeneID:361875"
                     /db_xref="RGD:1564936"
     exon            1..125
                     /gene="Atp6ap1l"
                     /gene_synonym="RGD1564936"
                     /inference="alignment:Splign:2.1.0"
     CDS             31..1041
                     /gene="Atp6ap1l"
                     /gene_synonym="RGD1564936"
                     /note="ATPase, H+ transporting, lysosomal accessory
                     protein 1-like"
                     /codon_start=1
                     /product="V-type proton ATPase subunit S1-like protein
                     precursor"
                     /protein_id="NP_001178772.1"
                     /db_xref="GeneID:361875"
                     /db_xref="RGD:1564936"
                     /translation="MGRKLLFSFSLLFLCMVFSVSLDQILARKNVGSQASSSKEAIVP
                     NGQRNSGEVKPVQNLTTVPITQTFNYNLSKAHWSTFSHHNPVKFSRDGIPCILFWTKR
                     ITVKFKNQTWLDLTDEALGQNTTVDTGNSNCSEENAVLSLKFGDAENPKDIDIRFTLS
                     NYIKLSSQSWFSLHRVEIIFNNSVQATFNATGIYALSTYSYHCQRVSSLRRNDALLLL
                     SSSDDVTSLWEVTFIDFQIQGFSIKGAQFSQARDCSSSFSPAVLIGLAMSLILLLVLA
                     YALHMLIYLRYLDHHYEFITSPAHFPSLRALDIGEEKELLGSQGAECYELRNQQICKI
                     YI"
     exon            126..166
                     /gene="Atp6ap1l"
                     /gene_synonym="RGD1564936"
                     /inference="alignment:Splign:2.1.0"
     exon            167..228
                     /gene="Atp6ap1l"
                     /gene_synonym="RGD1564936"
                     /inference="alignment:Splign:2.1.0"
     exon            229..446
                     /gene="Atp6ap1l"
                     /gene_synonym="RGD1564936"
                     /inference="alignment:Splign:2.1.0"
     exon            447..497
                     /gene="Atp6ap1l"
                     /gene_synonym="RGD1564936"
                     /inference="alignment:Splign:2.1.0"
     exon            498..738
                     /gene="Atp6ap1l"
                     /gene_synonym="RGD1564936"
                     /inference="alignment:Splign:2.1.0"
     exon            739..1153
                     /gene="Atp6ap1l"
                     /gene_synonym="RGD1564936"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgcttggctt gaagaagcat acatttcttg atgggaagaa aactcttgtt tagtttctca
       61 cttctgttct tatgtatggt gttttcagtc agtttggatc agatacttgc caggaagaat
      121 gtaggttctc aagcatcttc cagcaaagaa gcgattgtac cgaatggtca aaggaatagc
      181 ggagaggtga aaccagtcca gaatctcaca acggtgccca tcacacagac tttcaactac
      241 aatctgagca aagcacactg gagtacattc agccatcaca atcctgttaa gttctccagg
      301 gatgggattc cctgcatcct cttctggaca aaaagaatca cagttaaatt taagaatcag
      361 acgtggctgg acctcactga tgaagcactt ggtcaaaaca ccactgtgga caccggcaac
      421 tctaactgca gcgaggaaaa cgcggtgttg tctttaaagt ttggtgatgc tgaaaatccc
      481 aaggatattg atataaggtt caccctaagc aattacatca agctgtccag ccagagttgg
      541 tttagtttac accgtgtcga gataattttc aacaattcgg tgcaagcaac ttttaatgca
      601 accggtatat atgctttgtc aacttactcc taccactgcc aacgcgtcag cagcctgcgg
      661 cggaacgatg cgctcctgtt gcttagcagc tcagatgatg tgacaagcct gtgggaggtc
      721 acgtttattg atttccagat ccaaggcttc tccatcaagg gggcacagtt ttctcaggct
      781 cgagactgca gctcttcctt ctcacctgct gttctgattg gcctggccat gtctctgatt
      841 ctgttgctgg tgttggccta tgctctgcat atgctcatct acctgcgcta tctggaccat
      901 cactacgagt tcatcacctc tcctgcccac ttcccatctc tgagagcgct cgacataggg
      961 gaggagaagg agcttctggg gagccaggga gcagaatgct acgagctaag gaaccaacag
     1021 atctgcaaaa tctatattta gtaacacgag tctccatctc ctcaccaagg ccaaatcatc
     1081 tccaaaagac atttttctct tttgtgatgt ctgacttgtg aattgtttga ttaaaaaaag
     1141 agaaaaagaa aaa
//
