LOCUS       NM_134365               1221 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus ATP synthase peripheral stalk-membrane subunit b
            (Atp5pb), mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_134365
VERSION     NM_134365.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1221)
  AUTHORS   Wang,Y., Zhao,Y., Jiang,W., Zhao,X., Fan,G., Zhang,H., Shen,P.,
            He,J. and Fan,X.
  TITLE     iTRAQ-Based Proteomic Analysis Reveals Recovery of Impaired
            Mitochondrial Function in Ischemic Myocardium by Shenmai Formula
  JOURNAL   J Proteome Res 17 (2), 794-803 (2018)
   PUBMED   29300489
REFERENCE   2  (bases 1 to 1221)
  AUTHORS   Bruggemann,M., Gromes,A., Poss,M., Schmidt,D., Klumper,N.,
            Tolkach,Y., Dietrich,D., Kristiansen,G., Muller,S.C. and
            Ellinger,J.
  TITLE     Systematic Analysis of the Expression of the Mitochondrial ATP
            Synthase (Complex V) Subunits in Clear Cell Renal Cell Carcinoma
  JOURNAL   Transl Oncol 10 (4), 661-668 (2017)
   PUBMED   28672194
REFERENCE   3  (bases 1 to 1221)
  AUTHORS   Chen,S., Lu,F.F., Seeman,P. and Liu,F.
  TITLE     Quantitative proteomic analysis of human substantia nigra in
            Alzheimer's disease, Huntington's disease and Multiple sclerosis
  JOURNAL   Neurochem Res 37 (12), 2805-2813 (2012)
   PUBMED   22926577
REFERENCE   4  (bases 1 to 1221)
  AUTHORS   de Mateo,S., Castillo,J., Estanyol,J.M., Ballesca,J.L. and Oliva,R.
  TITLE     Proteomic characterization of the human sperm nucleus
  JOURNAL   Proteomics 11 (13), 2714-2726 (2011)
   PUBMED   21630459
REFERENCE   5  (bases 1 to 1221)
  AUTHORS   Zhao,X., Leon,I.R., Bak,S., Mogensen,M., Wrzesinski,K., Hojlund,K.
            and Jensen,O.N.
  TITLE     Phosphoproteome analysis of functional mitochondria isolated from
            resting human muscle reveals extensive phosphorylation of inner
            membrane protein complexes and enzymes
  JOURNAL   Mol Cell Proteomics 10 (1), M110.000299 (2011)
   PUBMED   20833797
REFERENCE   6  (bases 1 to 1221)
  AUTHORS   Mootha,V.K., Bunkenborg,J., Olsen,J.V., Hjerrild,M.,
            Wisniewski,J.R., Stahl,E., Bolouri,M.S., Ray,H.N., Sihag,S.,
            Kamal,M., Patterson,N., Lander,E.S. and Mann,M.
  TITLE     Integrated analysis of protein composition, tissue diversity, and
            gene regulation in mouse mitochondria
  JOURNAL   Cell 115 (5), 629-640 (2003)
   PUBMED   14651853
REFERENCE   7  (bases 1 to 1221)
  AUTHORS   Da Cruz,S., Xenarios,I., Langridge,J., Vilbois,F., Parone,P.A. and
            Martinou,J.C.
  TITLE     Proteomic analysis of the mouse liver mitochondrial inner membrane
  JOURNAL   J Biol Chem 278 (42), 41566-41571 (2003)
   PUBMED   12865426
REFERENCE   8  (bases 1 to 1221)
  AUTHORS   Aggeler,R., Coons,J., Taylor,S.W., Ghosh,S.S., Garcia,J.J.,
            Capaldi,R.A. and Marusich,M.F.
  TITLE     A functionally active human F1F0 ATPase can be purified by
            immunocapture from heart tissue and fibroblast cell lines. Subunit
            structure and activity studies
  JOURNAL   J Biol Chem 277 (37), 33906-33912 (2002)
   PUBMED   12110673
REFERENCE   9  (bases 1 to 1221)
  AUTHORS   Ko,Y.H., Hullihen,J., Hong,S. and Pedersen,P.L.
  TITLE     Mitochondrial F(0)F(1) ATP synthase. Subunit regions on the F1
            motor shielded by F(0), Functional significance, and evidence for
            an involvement of the unique F(0) subunit F(6)
  JOURNAL   J Biol Chem 275 (42), 32931-32939 (2000)
   PUBMED   10887193
REFERENCE   10 (bases 1 to 1221)
  AUTHORS   Tsurumi,C., Yoshihara,Y., Osaka,F., Yamada,F., Tani,I., Higuti,T.,
            Shimizu,M., Oeda,K., Ohkawa,H., Toda,H. et al.
  TITLE     cDNA cloning and sequencing for the import precursor of subunit B
            in H(+)-ATP synthase from rat mitochondria
  JOURNAL   Biochem Biophys Res Commun 169 (1), 136-142 (1990)
   PUBMED   2140936
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1, BC063808.1 and CK845764.1.
            
            On Mar 30, 2010 this sequence version replaced NM_134365.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ214353.1, FQ214371.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840115, SAMN12840117
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-84                JAXUCZ010000002.1  196123654-196123737 c
            85-1204             BC063808.1         26-1145
            1205-1221           CK845764.1         1-17                c
FEATURES             Location/Qualifiers
     source          1..1221
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..1221
                     /gene="Atp5pb"
                     /gene_synonym="Atp5f1"
                     /note="ATP synthase peripheral stalk-membrane subunit b"
                     /db_xref="GeneID:171375"
                     /db_xref="RGD:620041"
     exon            1..180
                     /gene="Atp5pb"
                     /gene_synonym="Atp5f1"
                     /inference="alignment:Splign:2.1.0"
     CDS             141..911
                     /gene="Atp5pb"
                     /gene_synonym="Atp5f1"
                     /note="ATP synthase subunit b, mitochondrial; ATPase
                     subunit b; ATP synthase, H+ transporting, mitochondrial F0
                     complex, subunit b; ATP synthase, H+ transporting,
                     mitochondrial F0 complex, subunit B1; ATP synthase F(0)
                     complex subunit B1, mitochondrial; ATP synthase, H+
                     transporting, mitochondrial Fo complex, subunit B1; ATP
                     synthase subunit b, mitochondrial-like"
                     /codon_start=1
                     /product="ATP synthase F(0) complex subunit B1,
                     mitochondrial precursor"
                     /protein_id="NP_599192.1"
                     /db_xref="GeneID:171375"
                     /db_xref="RGD:620041"
                     /translation="MLSRVVLSAAATAAPCLKNAAVLGPGVLQATRVFHTGQPRLAPL
                     PPLPEYGGKVRLGLIPEEFFQFLYPKTGVTGPYVLGTGLSLYFLSKEIYVITPETFST
                     ISVVGLIVYVIKKYGASIGEFIDKLNEEKIAQLEEIKQSSMKQIQDAINREKAQQALV
                     QKRHYLFDVQRNNIALALEVTYRERLHKAYKEVKNRLDYHISVQDMMRRKEGEHMINW
                     VEKHVIQSISAQQEKETIAKCIGDLKMLAKKAQAQPIM"
     exon            181..217
                     /gene="Atp5pb"
                     /gene_synonym="Atp5f1"
                     /inference="alignment:Splign:2.1.0"
     exon            218..363
                     /gene="Atp5pb"
                     /gene_synonym="Atp5f1"
                     /inference="alignment:Splign:2.1.0"
     exon            364..527
                     /gene="Atp5pb"
                     /gene_synonym="Atp5f1"
                     /inference="alignment:Splign:2.1.0"
     exon            528..653
                     /gene="Atp5pb"
                     /gene_synonym="Atp5f1"
                     /inference="alignment:Splign:2.1.0"
     exon            654..833
                     /gene="Atp5pb"
                     /gene_synonym="Atp5f1"
                     /inference="alignment:Splign:2.1.0"
     exon            834..1207
                     /gene="Atp5pb"
                     /gene_synonym="Atp5f1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaaaaaaatc agcacttccg agagaaagtg tgcagatctc ttctcgcgag atatgtgagc
       61 ggccatcttg ttcctgcccc tgagtgtctc gggtcggggt cacagggaca tcggtaccgc
      121 tgtctggatc ttcgcagaca atgctgtccc gggtggtact ttctgccgcc gccacagcgg
      181 ccccgtgtct gaagaacgcg gccgtcctgg gtccaggggt tttacaggca acaagggtct
      241 ttcacacagg acagcctcgc cttgcccctc taccacctct tcctgaatat ggaggaaaag
      301 tacgtcttgg gctgattcct gaggaatttt tccagttcct ttaccctaag actggtgtaa
      361 caggacccta cgtgcttgga actgggctta gcttgtactt tctatccaaa gaaatatatg
      421 tgattacccc agagaccttc tctaccatat cagtagtagg gttgattgtc tatgtgatta
      481 agaaatatgg cgcctctatt ggagaattta ttgacaaact taatgaggaa aaaattgctc
      541 aactagaaga aataaagcag tcaagcatga agcaaatcca ggatgcaatc aacagggaga
      601 aggcacagca ggcactggtt cagaagcgcc actacctctt cgatgttcag aggaataaca
      661 ttgccctggc cttggaggtc acttaccggg aacgactaca taaagcatat aaggaggtaa
      721 agaatcgcct ggactaccat atttctgtac aggacatgat gcgtcgcaag gagggagagc
      781 acatgataaa ctgggtggag aagcatgtga tacagagcat ttctgcacag caggaaaagg
      841 agaccattgc caagtgcatc ggagatctaa agatgcttgc aaagaaggct caagctcagc
      901 caattatgtg aatgtgtcta tctcagttgt gatagccaga gagggttaac ttaaatgaga
      961 actactctac ttgaagaact ctttctgtat tgctgtctaa tgaaattgtg gtgtaccttt
     1021 cctaagaaat gatcaaggtc catttagtgg cttaacccta tttctgatcc ttgctctgta
     1081 ttcggagttg tctgatcaca tttgagtaag caatttgcag caactcgctg cccaacagaa
     1141 attaccaagt tatagtttaa acttgtaatt agttaaaaca tcttacaata aaatgtttga
     1201 aacagaaaaa aaaaaaaaaa a
//
