LOCUS       NM_001361401             717 bp    mRNA    linear   ROD 20-SEP-2024
DEFINITION  Rattus norvegicus ATP synthase membrane subunit c locus 3
            (Atp5mc3), transcript variant 2, mRNA; nuclear gene for
            mitochondrial product.
ACCESSION   NM_001361401 XM_006224495 XM_006234393
VERSION     NM_001361401.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Kim,J.W., Kwon,O.Y. and Kim,M.H.
  TITLE     Differentially expressed genes and morphological changes during
            lengthened immobilization in rat soleus muscle
  JOURNAL   Differentiation 75 (2), 147-157 (2007)
   PUBMED   17316384
REFERENCE   3  (bases 1 to 717)
  AUTHORS   Ishihata,A. and Katano,Y.
  TITLE     Investigation of differentially expressed genes in the ventricular
            myocardium of senescent rats
  JOURNAL   Ann N Y Acad Sci 1067, 142-151 (2006)
   PUBMED   16803979
REFERENCE   4  (bases 1 to 717)
  AUTHORS   Traina,G., Valleggi,S., Bernardi,R., Rizzo,M., Calvani,M.,
            Nicolai,R., Mosconi,L., Durante,M. and Brunelli,M.
  TITLE     Identification of differentially expressed genes induced in the rat
            brain by acetyl-L-carnitine as evidenced by suppression subtractive
            hybridisation
  JOURNAL   Brain Res Mol Brain Res 132 (1), 57-63 (2004)
   PUBMED   15548429
REFERENCE   5  (bases 1 to 717)
  AUTHORS   Li,H.S., Zhang,J.Y., Thompson,B.S., Deng,X.Y., Ford,M.E.,
            Wood,P.G., Stolz,D.B., Eagon,P.K. and Whitcomb,D.C.
  TITLE     Rat mitochondrial ATP synthase ATP5G3: cloning and upregulation in
            pancreas after chronic ethanol feeding
  JOURNAL   Physiol Genomics 6 (2), 91-98 (2001)
   PUBMED   11459924
  REMARK    Publication Status: Online-Only
REFERENCE   6  (bases 1 to 717)
  AUTHORS   McGeoch,J.E. and Guidotti,G.
  TITLE     Batten disease and the control of the Fo subunit c pore by cGMP and
            calcium
  JOURNAL   Eur J Paediatr Neurol 5 Suppl A, 147-150 (2001)
   PUBMED   11588987
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1 and FM058126.1.
            
            On or before Mar 28, 2018 this sequence version replaced
            XM_006234393.3, XM_006224495.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ084121.1, FQ241972.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840111, SAMN12840115
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-5                 JAXUCZ010000003.1  79220660-79220664   c
            6-636               FM058126.1         1-631
            637-717             JAXUCZ010000003.1  79218014-79218094   c
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q23"
     gene            1..717
                     /gene="Atp5mc3"
                     /gene_synonym="Atp5g3"
                     /note="ATP synthase membrane subunit c locus 3"
                     /db_xref="GeneID:114630"
                     /db_xref="RGD:620052"
     exon            1..73
                     /gene="Atp5mc3"
                     /gene_synonym="Atp5g3"
                     /inference="alignment:Splign:2.1.0"
     exon            74..179
                     /gene="Atp5mc3"
                     /gene_synonym="Atp5g3"
                     /inference="alignment:Splign:2.1.0"
     CDS             141..566
                     /gene="Atp5mc3"
                     /gene_synonym="Atp5g3"
                     /note="ATP synthase lipid-binding protein, mitochondrial;
                     ATPase protein 9; ATPase subunit c; ATP synthase
                     proteolipid P3; ATP synthase, H+ transporting,
                     mitochondrial F0 complex, subunit c (subunit 9); ATP
                     synthase, H+ transporting, mitochondrial F0 complex,
                     subunit C3 (subunit 9); ATP synthase, H+ transporting,
                     mitochondrial Fo complex, subunit C3 (subunit 9); ATP
                     synthase F(0) complex subunit C3, mitochondrial"
                     /codon_start=1
                     /product="ATP synthase F(0) complex subunit C3,
                     mitochondrial precursor"
                     /protein_id="NP_001348330.1"
                     /db_xref="GeneID:114630"
                     /db_xref="RGD:620052"
                     /translation="MFACAKLARTPALIRAGSRVAYRPISASVLSRPETRTGEGSTVF
                     NGAQNGVCQLIRREFQTSVISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGY
                     ARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM"
     exon            180..257
                     /gene="Atp5mc3"
                     /gene_synonym="Atp5g3"
                     /inference="alignment:Splign:2.1.0"
     exon            258..451
                     /gene="Atp5mc3"
                     /gene_synonym="Atp5g3"
                     /inference="alignment:Splign:2.1.0"
     exon            452..717
                     /gene="Atp5mc3"
                     /gene_synonym="Atp5g3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgcaccgcg cttgcgcacc cagccccact gcttcgacct ctgccgccgc tgctgccgcc
       61 gccgcctccg gagagaggaa gcaggagagg agcccacatc gcctgtcacc tatatccacg
      121 ccgcgccgcc aggaagaaag atgttcgcct gcgccaagct cgcccgcacc cctgctctga
      181 tccgagctgg atccagagtt gcatatagac caatttctgc atcagtatta tctcgaccag
      241 agactaggac tggagagggc tctacggtat ttaatggggc ccagaatggt gtgtgccagc
      301 tgatccgaag ggagttccag accagtgtaa tcagcagaga tattgatact gctgccaaat
      361 tcattggtgc aggtgctgcc acagtaggag ttgctggttc tggtgctggt attggaacag
      421 tctttggcag tcttatcatt ggctatgcca gaaacccttc actgaagcag cagctgttct
      481 catacgctat cctgggattt gccttgtctg aagctatggg tctcttttgt ttgatggttg
      541 cgttcttgat cttgtttgcc atgtaacaga aattactgcc taaaatgttg gcattcatag
      601 taattacgga tgtaattctg tgtatcttgc tgtgactccg aagactgtag tactggtgtc
      661 atggaaatat gtgttatttc caaagtcatt tcattaaaga tggaaacttt aaatttt
//
