LOCUS       NM_053825               1110 bp    mRNA    linear   ROD 20-SEP-2024
DEFINITION  Rattus norvegicus ATP synthase F1 subunit gamma (Atp5f1c), mRNA;
            nuclear gene for mitochondrial product.
ACCESSION   NM_053825 XM_341555
VERSION     NM_053825.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1110)
  AUTHORS   Morgenstern,M., Peikert,C.D., Lubbert,P., Suppanz,I., Klemm,C.,
            Alka,O., Steiert,C., Naumenko,N., Schendzielorz,A., Melchionda,L.,
            Muhlhauser,W.W.D., Knapp,B., Busch,J.D., Stiller,S.B.,
            Dannenmaier,S., Lindau,C., Licheva,M., Eickhorst,C., Galbusera,R.,
            Zerbes,R.M., Ryan,M.T., Kraft,C., Kozjak-Pavlovic,V., Drepper,F.,
            Dennerlein,S., Oeljeklaus,S., Pfanner,N., Wiedemann,N. and
            Warscheid,B.
  TITLE     Quantitative high-confidence human mitochondrial proteome and its
            dynamics in cellular context
  JOURNAL   Cell Metab 33 (12), 2464-2483 (2021)
   PUBMED   34800366
REFERENCE   2  (bases 1 to 1110)
  AUTHORS   Sun,L., Min,L., Li,M., Shao,F. and Wang,W.
  TITLE     Transcriptomic analysis reveals oxidative phosphorylation
            activation in an adolescent social isolation rat model
  JOURNAL   Brain Res Bull 142, 304-312 (2018)
   PUBMED   30142370
REFERENCE   3  (bases 1 to 1110)
  AUTHORS   Tapia-Limonchi,R., Diaz,I., Cahuana,G.M., Bautista,M., Martin,F.,
            Soria,B., Tejedo,J.R. and Bedoya,F.J.
  TITLE     Impact of exposure to low concentrations of nitric oxide on protein
            profile in murine and human pancreatic islet cells
  JOURNAL   Islets 6 (5-6), e995997 (2014)
   PUBMED   25658244
REFERENCE   4  (bases 1 to 1110)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   5  (bases 1 to 1110)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   6  (bases 1 to 1110)
  AUTHORS   Aggeler,R., Coons,J., Taylor,S.W., Ghosh,S.S., Garcia,J.J.,
            Capaldi,R.A. and Marusich,M.F.
  TITLE     A functionally active human F1F0 ATPase can be purified by
            immunocapture from heart tissue and fibroblast cell lines. Subunit
            structure and activity studies
  JOURNAL   J Biol Chem 277 (37), 33906-33912 (2002)
   PUBMED   12110673
REFERENCE   7  (bases 1 to 1110)
  AUTHORS   Ko,Y.H., Hullihen,J., Hong,S. and Pedersen,P.L.
  TITLE     Mitochondrial F(0)F(1) ATP synthase. Subunit regions on the F1
            motor shielded by F(0), Functional significance, and evidence for
            an involvement of the unique F(0) subunit F(6)
  JOURNAL   J Biol Chem 275 (42), 32931-32939 (2000)
   PUBMED   10887193
REFERENCE   8  (bases 1 to 1110)
  AUTHORS   Bianchet,M.A., Hullihen,J., Pedersen,P.L. and Amzel,L.M.
  TITLE     The 2.8-A structure of rat liver F1-ATPase: configuration of a
            critical intermediate in ATP synthesis/hydrolysis
  JOURNAL   Proc Natl Acad Sci U S A 95 (19), 11065-11070 (1998)
   PUBMED   9736690
REFERENCE   9  (bases 1 to 1110)
  AUTHORS   Jabs,E.W., Thomas,P.J., Bernstein,M., Coss,C., Ferreira,G.C. and
            Pedersen,P.L.
  TITLE     Chromosomal localization of genes required for the terminal steps
            of oxidative metabolism: alpha and gamma subunits of ATP synthase
            and the phosphate carrier
  JOURNAL   Hum Genet 93 (5), 600-602 (1994)
   PUBMED   8168843
REFERENCE   10 (bases 1 to 1110)
  AUTHORS   Pedersen,P.L., Williams,N. and Hullihen,J.
  TITLE     Mitochondrial ATP synthase: dramatic Mg2+-induced alterations in
            the structure and function of the F1-ATPase moiety
  JOURNAL   Biochemistry 26 (26), 8631-8637 (1987)
   PUBMED   2894844
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC059158.1.
            
            On Aug 31, 2012 this sequence version replaced NM_053825.1.
            
            Publication Note:  This RefSeq record includes a subset of the
            publications that are available for this gene. Please see the Gene
            record to access additional publications.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC059158.1, FQ213852.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1110              BC059158.1         5-1114
FEATURES             Location/Qualifiers
     source          1..1110
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17q12.3"
     gene            1..1110
                     /gene="Atp5f1c"
                     /gene_synonym="Atp5c1"
                     /note="ATP synthase F1 subunit gamma"
                     /db_xref="GeneID:116550"
                     /db_xref="RGD:620011"
     exon            1..94
                     /gene="Atp5f1c"
                     /gene_synonym="Atp5c1"
                     /inference="alignment:Splign:2.1.0"
     CDS             39..935
                     /gene="Atp5f1c"
                     /gene_synonym="Atp5c1"
                     /EC_number="3.6.1.14"
                     /note="F-ATPase gamma subunit; ATP synthase, H+
                     transporting, mitochondrial F1 complex, gamma polypeptide
                     1"
                     /codon_start=1
                     /product="ATP synthase subunit gamma, mitochondrial"
                     /protein_id="NP_446277.1"
                     /db_xref="GeneID:116550"
                     /db_xref="RGD:620011"
                     /translation="MFSRASIVGLSACSLQPQWIQVRNMATLKDITRRLKSIKNIQKI
                     TKSMKMVAAAKYARAERELKPARVYGTGSLALYEKAEIKGPEDKKKHLIIGVSSDRGL
                     CGAIHSSVAKQMKNDMAALTAAGKEVMIVGIGEKIKSILYRTHSDQFLVSFKDVGRKP
                     PTFGDASVIALELLNSGYEFDEGSIIFNQFKSVISYKTEEKPIFSFSTVVAAENMSIY
                     DDIDADVLQNYQEYNLANIIYYSLKESTTSEQSARMTAMDNASKNASDMIDKLTLTFN
                     RTRQAVITKELIEIISGAAALD"
     exon            95..129
                     /gene="Atp5f1c"
                     /gene_synonym="Atp5c1"
                     /inference="alignment:Splign:2.1.0"
     exon            130..261
                     /gene="Atp5f1c"
                     /gene_synonym="Atp5c1"
                     /inference="alignment:Splign:2.1.0"
     exon            262..466
                     /gene="Atp5f1c"
                     /gene_synonym="Atp5c1"
                     /inference="alignment:Splign:2.1.0"
     exon            467..675
                     /gene="Atp5f1c"
                     /gene_synonym="Atp5c1"
                     /inference="alignment:Splign:2.1.0"
     exon            676..831
                     /gene="Atp5f1c"
                     /gene_synonym="Atp5c1"
                     /inference="alignment:Splign:2.1.0"
     exon            832..928
                     /gene="Atp5f1c"
                     /gene_synonym="Atp5c1"
                     /inference="alignment:Splign:2.1.0"
     exon            929..965
                     /gene="Atp5f1c"
                     /gene_synonym="Atp5c1"
                     /inference="alignment:Splign:2.1.0"
     exon            966..1083
                     /gene="Atp5f1c"
                     /gene_synonym="Atp5c1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcagtgagcc tcgtctgccc gaccttcaag gttctaccat gttctcgcgg gcgagtattg
       61 tcgggctgtc ggcctgctcc ttgcagccgc aatggatcca agttcgaaac atggcaaccc
      121 tgaaagacat taccaggaga ctgaagtcca tcaaaaacat ccagaagatt accaagtcta
      181 tgaagatggt ggcagcagcg aagtacgccc gggctgagcg ggagctgaag ccagctcgag
      241 tgtatgggac aggctccttg gctctgtatg agaaggctga gattaaggga cctgaggaca
      301 agaagaagca cctcattatt ggtgtgtcct cggatcgagg cctttgtggt gctattcatt
      361 cctccgtggc taaacaaatg aagaatgaca tggctgccct cacagcagct gggaaagaag
      421 ttatgattgt tggaattggt gaaaaaatca agagcatact ttataggact cactctgatc
      481 agtttttggt gtccttcaaa gacgtggggc ggaagccccc tacttttgga gatgcatcgg
      541 tcattgcctt ggagttgtta aattcgggat atgaatttga tgaaggctct attatcttta
      601 atcagttcaa gtctgttatc tcctacaaga cagaagagaa gcccatcttc tctttcagta
      661 ccgtcgtggc tgctgagaac atgagcattt atgatgacat tgatgctgac gtgctgcaga
      721 attaccagga atacaatctg gccaacatca tctactactc cctgaaggag tccaccacca
      781 gtgagcagag tgccaggatg accgccatgg acaacgccag caagaacgcc tctgatatga
      841 ttgataaatt gacgctgact ttcaaccgca cccgccaggc cgtcatcacg aaggagctga
      901 tagagatcat ctccggggct gctgctctgg attaatgaga atcaagttac atcctcagac
      961 aagaggtgaa gaaggaaaac gcagctgatt ttaactgatt gctgtccttg ttagaagaaa
     1021 cttggtccac tgagtcacaa agacagcagg atgtttgtaa attatcttac aataaacaac
     1081 ttaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
