LOCUS       NM_001191657            4464 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus ATPase 13A5 (Atp13a5), mRNA.
ACCESSION   NM_001191657 XM_221354
VERSION     NM_001191657.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4464)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000011.1.
            
            On Jul 17, 2010 this sequence version replaced XM_221354.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360176.960293.1,
                                           SRR26643297.38530.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-183               JAXUCZ010000011.1  84881230-84881412
            184-357             JAXUCZ010000011.1  84907210-84907383
            358-504             JAXUCZ010000011.1  84908877-84909023
            505-575             JAXUCZ010000011.1  84909236-84909306
            576-656             JAXUCZ010000011.1  84909409-84909489
            657-726             JAXUCZ010000011.1  84917098-84917167
            727-861             JAXUCZ010000011.1  84921853-84921987
            862-934             JAXUCZ010000011.1  84927221-84927293
            935-1063            JAXUCZ010000011.1  84928420-84928548
            1064-1234           JAXUCZ010000011.1  84934233-84934403
            1235-1392           JAXUCZ010000011.1  84939273-84939430
            1393-1581           JAXUCZ010000011.1  84941054-84941242
            1582-1643           JAXUCZ010000011.1  84945038-84945099
            1644-1794           JAXUCZ010000011.1  84947472-84947622
            1795-1881           JAXUCZ010000011.1  84965417-84965503
            1882-2038           JAXUCZ010000011.1  84966125-84966281
            2039-2156           JAXUCZ010000011.1  84970112-84970229
            2157-2281           JAXUCZ010000011.1  84977313-84977437
            2282-2442           JAXUCZ010000011.1  84978719-84978879
            2443-2559           JAXUCZ010000011.1  84980645-84980761
            2560-2639           JAXUCZ010000011.1  84981838-84981917
            2640-2682           JAXUCZ010000011.1  84984130-84984172
            2683-2792           JAXUCZ010000011.1  84986514-84986623
            2793-2889           JAXUCZ010000011.1  84990278-84990374
            2890-2962           JAXUCZ010000011.1  84992845-84992917
            2963-3137           JAXUCZ010000011.1  85002601-85002775
            3138-3340           JAXUCZ010000011.1  85005609-85005811
            3341-3429           JAXUCZ010000011.1  85015170-85015258
            3430-3510           JAXUCZ010000011.1  85017905-85017985
            3511-4464           JAXUCZ010000011.1  85019640-85020593
FEATURES             Location/Qualifiers
     source          1..4464
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q22"
     gene            1..4464
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /note="ATPase 13A5"
                     /db_xref="GeneID:303856"
                     /db_xref="RGD:1306792"
     exon            1..183
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     CDS             121..3771
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /note="ATPase type 13A5"
                     /codon_start=1
                     /product="probable cation-transporting ATPase 13A5"
                     /protein_id="NP_001178586.1"
                     /db_xref="GeneID:303856"
                     /db_xref="RGD:1306792"
                     /translation="MEKSKTDGHQAVLNEGEENELEVFGYQTQNLRRALCLVTAILTL
                     GAVQLMFYWRPEWWVWTSCIPCPLQEADIVLLRTTDEFRRYMRKKVFCLHLSTLKIPI
                     SKNPGEPLVADHHSVINQAVMKPELKLRCIQVQKIRYVWDFLKKRFQKVGLLEDSNSC
                     FDIHHTFGLGLTSEEQEVRRLVCGPNAIEVEIQPIWKLLVKQVLNPFYVFQAFTLTLW
                     LSQGYIEYSVAIIILTVISIVLSVYDLRQQSVKLHKLVEDHNKVQVTITVRDKGLQEL
                     ESRLLVPGDILILPGKISLPCDAVLIDGSCVVNEGMLTGESIPVTKTPLPQTENTMPW
                     KSHSLEDYRKHVLFCGTEVIQVKPSGQGPVRAVVLQTGYNTAKGDLVRSILYPRPLNF
                     KLYNDAFKFMVFLACIGVVGFFYALGVYLYHEVPPRETVTMALILLTATVPPVLPAAL
                     TIGNVYAQKRLKKKKIFCISPQRINMCGQINLVCFDKTGTLTEDGLDLWGTVPTAGNC
                     FQAVHSFASGEAVPWGPLCAAMASCHSLILLDGTIQGDPLDLKMFEGTGWNMEDGQVA
                     SCKYSTADSGTVIKPGPNASQSPVDSITILRQFPFSSGLQRMSVIAQLAGDLRLHVYM
                     KGAPEMVARFCSSETVPKNFPQELRNYTVQGFRVIALAHKTLKMEKVSDVERLAREKV
                     ESELAFLGLLIMENRLKNETRPVLQELSEARIRTVMVTGDNLQTAITVAKNSEMIPVG
                     SQVIIVEANEPGDLVPASVTWQLVGTQEPGSEKKDTYIDIGNSSVPCGKGYHFAMSGK
                     SYQVLFHHFYSMLPQILVNGTVFARMSPGQKSSLVEEFQKLNYYVGMCGDGANDCGAL
                     KMAHAGISLSEQEASVASPFTSKVANIECVPHLIREGRAALVSSFGVFKYLTMYGIIQ
                     FIGTSLLYWQLQLFGNYQYLLQDVAITLMVSLTMSINHAYPKLAPYRPAGQLLSPQLL
                     LSVFMNSCFTCIVLVCTFLSVKQQPWYCEVYKYSECFLVNQSNFSTNMGLERNWTGNA
                     TLVPASVLSFEGTTLWPIVTFNCISAAFIFSKGKPFRKPIYTNYLFSLLLTSAVGLTV
                     FILFSDFQDIYRRMEFIPTTTSWRISILVAAFVQFCVAFFVEDAILQNRELWLFIKKE
                     FGFYSKSQYRILQRKLAEDSTWPPTNRTDYAVNGKNGLYINRAYESPEQVPKGKLKLG
                     GQASEQHFWTRL"
     exon            184..357
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            358..504
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            505..575
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            576..656
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            657..726
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            727..861
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            862..934
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            935..1063
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            1064..1234
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            1235..1392
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            1393..1581
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            1582..1643
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            1644..1794
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            1795..1881
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            1882..2038
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            2039..2156
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            2157..2281
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            2282..2442
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            2443..2559
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            2560..2639
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            2640..2682
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            2683..2792
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            2793..2889
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            2890..2962
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            2963..3137
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            3138..3340
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            3341..3429
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            3430..3510
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
     exon            3511..4464
                     /gene="Atp13a5"
                     /gene_synonym="RGD1306792"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggcaaggtg ccagcgggtt ttgtaagcac ctgagaacag cgatgacaag tagtgcctga
       61 gtcacagagg cacaggtggc tttgacagtg gtcagaaaga acccacactc gctgctcgag
      121 atggagaaga gcaagacgga tggtcaccag gctgtgctca atgaaggaga ggagaatgag
      181 ctggaggtgt ttggctacca gactcagaat ttacgaagag ccttgtgcct cgtcacagcc
      241 atcctgactc ttggggcagt tcagctcatg ttctactgga ggcctgagtg gtgggtgtgg
      301 accagttgca tcccatgccc cttacaagaa gcagacatag ttttgctgag gacaactgat
      361 gaatttcgaa gatatatgag gaaaaaggtt ttctgccttc acttatcgac actgaagatc
      421 cctataagca agaacccagg ggaacctctg gtagctgatc accactcggt cataaaccaa
      481 gctgtaatga agccagaatt aaaactacga tgcattcaag tgcagaaaat caggtacgtg
      541 tgggatttct tgaagaagcg atttcagaaa gttgggttgc tggaagacag taactcctgc
      601 tttgacatcc accatacatt tggattgggt ctgaccagtg aagagcaaga ggtcagacgg
      661 ttagtgtgtg ggcccaatgc tatcgaggtg gagatccagc ctatatggaa gctgcttgtt
      721 aaacaggttt taaatccatt ctacgtgttc caagccttca ccctcactct atggctgtct
      781 cagggttaca tagaatactc tgtggccatc atcattttga ctgttatatc cattgtcttg
      841 agtgtgtatg acttgagaca gcaatcagtt aagctgcaca agcttgtgga ggatcacaac
      901 aaagtccagg tcacaatcac agtaagagac aaaggtctgc aggagctgga gtcccgtctc
      961 ctggttccgg gagatattct cattcttcca gggaaaattt cattgccctg tgatgctgta
     1021 ttgattgatg ggagttgtgt ggtgaatgaa ggaatgctca caggagaaag tatacctgtt
     1081 acaaagacac cattgcccca aacggagaac accatgccct ggaaatcaca cagtttggag
     1141 gactaccgga aacatgtgct cttctgcgga acagaagtga ttcaggtcaa gccatctggc
     1201 cagggacctg ttagagccgt ggttctgcag acaggttata atacagcaaa aggagactta
     1261 gtgagatcca tcctctatcc ccgacctctg aacttcaaac tgtataatga tgccttcaag
     1321 ttcatggtgt tcctggcctg cattggtgtt gtgggatttt tctatgccct aggtgtctat
     1381 ttgtaccatg aagttcctcc gagagaaact gtaaccatgg ctctgatcct cctcactgcc
     1441 actgtccctc ctgtgctccc agctgccctg accatcggca atgtgtatgc ccagaagagg
     1501 ctgaagaaga agaagatttt ctgcatctcc ccacagagaa tcaatatgtg cggccagatc
     1561 aacctcgtgt gcttcgacaa aacaggaact cttacagaag atgggctgga cctctggggg
     1621 acggttccca ctgctggcaa ctgtttccag gcagtccaca gctttgcctc aggtgaggct
     1681 gtaccctggg gcccactgtg tgcagccatg gccagctgcc actccctgat ccttcttgat
     1741 gggaccatcc agggagaccc tctggacctc aaaatgtttg aaggcactgg ctggaatatg
     1801 gaagatggcc aagtggcctc ctgcaaatat agcacggcag attccggcac agtaataaaa
     1861 ccaggaccga acgctagcca gagtcccgtg gacagcatca ccatcttgcg ccagtttcca
     1921 ttttcctcag gactgcaaag gatgtctgtg attgctcagc tggctggtga cctccgtctc
     1981 cacgtctaca tgaagggtgc cccggaaatg gtggccaggt tctgcagctc tgaaacggtg
     2041 cctaagaact tcccacagga gctgaggaat tacacagtgc aaggcttccg tgtcatcgct
     2101 cttgcccata aaaccctgaa gatggagaag gtttccgatg tggaacgtct agcaagggag
     2161 aaagtggagt ccgagctggc atttctgggt cttctcataa tggagaatcg cttgaaaaat
     2221 gaaacgaggc cagtgctgca ggaactgagc gaggcccgca tcaggaccgt gatggtgaca
     2281 ggtgacaatc ttcaaactgc catcactgtt gctaaaaatt ctgaaatgat tcctgtgggc
     2341 agccaggtca tcattgtcga ggctaatgag ccaggagacc ttgttcctgc ttctgtgacc
     2401 tggcagctgg tggggaccca agagccaggc tctgagaaga aggacaccta cattgatatc
     2461 ggaaacagtt cagtaccttg tgggaaaggt taccattttg caatgagtgg gaagtcctat
     2521 caagtgctat ttcatcattt ctacagcatg ctgccacaaa ttctggtcaa tggaaccgtt
     2581 tttgcaagaa tgtctcctgg gcagaaatca agtcttgtgg aagagtttca gaaattaaat
     2641 tattatgtgg gcatgtgtgg agatggagcc aatgactgtg gggctttgaa aatggcgcat
     2701 gcgggcatct cgctgtcaga gcaggaagcg tctgtggcct ctcccttcac ctcgaaagtg
     2761 gccaatatcg agtgtgtgcc tcatctcatc agggagggac gggctgcact ggtttcatcc
     2821 ttcggtgtat ttaaatactt gaccatgtac ggcatcatcc agtttattgg aacatcactg
     2881 ctgtactggc aactacagct cttcggtaat taccagtatc tcctgcaaga tgtggccatc
     2941 accctgatgg tcagcttaac aatgagcata aaccatgcct acccgaagtt ggctccatac
     3001 agaccagcag gacaactcct ttctcctcag ttgctactct cagtcttcat gaattcctgt
     3061 ttcacctgca ttgtgctagt gtgtacgttt ctctctgtga aacagcagcc ttggtactgt
     3121 gaggtctaca aatacagtga atgctttctg gtcaaccaaa gtaatttctc aaccaacatg
     3181 ggtttggagc gaaactggac tgggaatgca accctggttc ctgcttcggt gctaagtttc
     3241 gagggcacca ctttgtggcc cattgtcacc ttcaactgca tctcagcagc ttttattttt
     3301 tctaagggaa agccatttcg gaaacccatc tacaccaact atttattctc gcttctgctg
     3361 acatctgctg tgggcctcac tgttttcatt ctgttttctg attttcaaga tatataccgt
     3421 agaatggagt tcatcccaac cacaacatca tggagaattt caattctggt ggcagccttt
     3481 gtccagttct gtgtggcatt ctttgtagag gatgccatcc ttcaaaatag agagctctgg
     3541 ctgtttataa agaaagaatt tggattctac tcgaaaagtc agtataggat cttgcagaga
     3601 aagctggcag aagactcgac gtggcctccc acgaacagga cagattatgc agtcaatggc
     3661 aaaaatggac tctacatcaa cagagcctat gaaagccctg aacaggtccc gaaagggaag
     3721 ctcaaactgg gagggcaagc ttcagaacag catttttgga ccagactgta acctgaattg
     3781 cagtcacgcc tgatccacaa catcaccctt tgtccccaaa ctaaacattg tggaaaggag
     3841 gaaactgcat acatatcctt ctcttctctc tctgtcgaag tatccaatgc acttcaacat
     3901 agcgaccctt gcagcaaaga acttaacatt cattctaccc ttcactagct ccagagaaac
     3961 ctgcatgtct cagatcacct ttgtaataac ccgtattcat attgtattgt tctaaatgga
     4021 cagctctcat gcaacaagat tagatgtatg gacatcggat gagaagaaaa actgagaaag
     4081 cacttggtgt ttgaaagtta tagtaatgta ttaatcgatg taagtttctt tagtcttaca
     4141 ttaatttgtg gagcacattc atgtacatac attggccagg attataagat tcctcctggt
     4201 ttgcatcttt ggtgtgactt aagtggagaa ataagatgaa ttattccacc ctaggtacac
     4261 aggaagccag agtggtgtgg aagttgagaa cagtagagat cggtgctaat cttttataat
     4321 cacggcatgg gtgttgctag ggtgtaagca aaatacacca acttggtaca tttcaaaagt
     4381 atagtgtatg ggtctgggga gcctaacagt gcagagtaga ccagaataat gaaataaact
     4441 tttcaaatgt gttttttcac ttta
//
