LOCUS       NM_001191658            3901 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus ATPase 13A4 (Atp13a4), mRNA.
ACCESSION   NM_001191658 XM_221355
VERSION     NM_001191658.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3901)
  AUTHORS   Vallipuram,J., Grenville,J. and Crawford,D.A.
  TITLE     The E646D-ATP13A4 mutation associated with autism reveals a defect
            in calcium regulation
  JOURNAL   Cell Mol Neurobiol 30 (2), 233-246 (2010)
   PUBMED   19731010
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000011.1.
            
            On Apr 22, 2011 this sequence version replaced NM_001191658.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643295.43707.1,
                                           SRR26643297.38527.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMN14984024
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-63                JAXUCZ010000011.1  84731281-84731343
            64-237              JAXUCZ010000011.1  84781170-84781343
            238-384             JAXUCZ010000011.1  84793527-84793673
            385-455             JAXUCZ010000011.1  84797566-84797636
            456-536             JAXUCZ010000011.1  84797725-84797805
            537-606             JAXUCZ010000011.1  84799656-84799725
            607-741             JAXUCZ010000011.1  84801034-84801168
            742-811             JAXUCZ010000011.1  84803755-84803824
            812-946             JAXUCZ010000011.1  84813935-84814069
            947-1117            JAXUCZ010000011.1  84816352-84816522
            1118-1275           JAXUCZ010000011.1  84818033-84818190
            1276-1464           JAXUCZ010000011.1  84819356-84819544
            1465-1526           JAXUCZ010000011.1  84821543-84821604
            1527-1677           JAXUCZ010000011.1  84823555-84823705
            1678-1764           JAXUCZ010000011.1  84825394-84825480
            1765-1918           JAXUCZ010000011.1  84825690-84825843
            1919-2030           JAXUCZ010000011.1  84826653-84826764
            2031-2155           JAXUCZ010000011.1  84831987-84832111
            2156-2319           JAXUCZ010000011.1  84837828-84837991
            2320-2442           JAXUCZ010000011.1  84838793-84838915
            2443-2522           JAXUCZ010000011.1  84840217-84840296
            2523-2565           JAXUCZ010000011.1  84842080-84842122
            2566-2675           JAXUCZ010000011.1  84842467-84842576
            2676-2772           JAXUCZ010000011.1  84844970-84845066
            2773-2845           JAXUCZ010000011.1  84847019-84847091
            2846-3017           JAXUCZ010000011.1  84852376-84852547
            3018-3211           JAXUCZ010000011.1  84853156-84853349
            3212-3300           JAXUCZ010000011.1  84854408-84854496
            3301-3381           JAXUCZ010000011.1  84858122-84858202
            3382-3901           JAXUCZ010000011.1  84864228-84864747
FEATURES             Location/Qualifiers
     source          1..3901
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /map="11q22"
     gene            1..3901
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /note="ATPase 13A4"
                     /db_xref="GeneID:288026"
                     /db_xref="RGD:1306927"
     CDS             1..3582
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /note="ATPase type 13A4"
                     /codon_start=1
                     /product="probable cation-transporting ATPase 13A4"
                     /protein_id="NP_001178587.2"
                     /db_xref="GeneID:288026"
                     /db_xref="RGD:1306927"
                     /translation="MGDHLGKSQHALLNEGDENEMEIFGYRTQGCRKALCLIGSIFSL
                     GMLPLVFYWRPAWRVWANCVPCSLQEADIVLLRTTDEFKIYSWKKVMWISLSALSSTS
                     GLTPDHPLIADEEFIINRAIRKPDLKVRYIKVQKIRYVWNNLEGQFQKIGSLEDCLSS
                     AKIHQKFGLGLTSEEQEIRRLICGPNAIDVEIIPIWKLLVKEVLNPFYIFQLFSVCLW
                     FSEDYKEYALAIILMSVISIALTVYDLRQQSVKLHHLVESHNSITVSVYERKAGAQDL
                     ESRLLVPGDLLILTGSRVQMPCDAVLIDGSCVVDEGMLTGESIPVTKTPLSQTASSAP
                     WKMQSEADPRRHILFCGTEVIQAKAAGSGTVRAVVLQTGFNTAKGDLVRSILYPKPMN
                     FKLYRDAIRFLLCLVGTATIGMIYTLCVYVLSGEPPEEVVRKALDVITIAVPPALPAA
                     LTTGIIYAQRRLKKKGIFCISPQRINVCGQLNLVCFDKTGTLTRGGLDLWGVVPCDQN
                     GFQAVHSFASGEAVPWGPLCAAMATCHSLILLDGTIQGDPLDLKMFEATQWEMTVSGD
                     DFHNKEMLAHTMVVKPPDTVGQVPAEGLAILHQFPFSSALQRMTVIVQETGGGRMAFM
                     KGAPERVASFCQPDTVPTTFISELQVYTTQGFRVIALAYKKLETDCPTTTLMREKVES
                     DLIFLGLLILENRLKEETRPVLEELISARIRTAMITGDNLQTAITVARKSGMVSEGQK
                     VILVEANEATDSSSASITWKLVEEKKHGLFGSQDTYINIREEVPENGREGNYHFALSG
                     KSFQVISQHFSSLLPKILINGTIFARMSPGQKSSLVEEFQKLDYFVGMCGDGANDCGA
                     LKMAHVGVSLSEQEASVASPFTSKTPNIECVPHLIKEGRAALVTSFCMFKYMALYSMI
                     QYVGVLLLYWKTNSLSNYQFLFQDLAITTLIGVTMNLNGANPKLVPFRPAGRLISPPL
                     LLSVILNILLSLAMHIVGFILVQKQPWYSMDYHSVCPVRNESVSALSASPNVPEKTRS
                     NSTFASFENTTIWFLGTINCIVVALVFSKGKPFRQPTYTNYIFVLVLILQMGVCLFIL
                     FADIPELHRRLDLLCTPVLWRVYILIMVSSNFVVSLAVEKAIIENRALWTAVKRCFGY
                     HSKSQYRVWQRNLATDSSWPPLNQTSYSDMQGVSYSNPVFESNEEQL"
     exon            1..63
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            64..237
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            238..384
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            385..455
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            456..536
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            537..606
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            607..741
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            742..811
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            812..946
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            947..1117
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            1118..1275
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            1276..1464
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            1465..1526
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            1527..1677
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            1678..1764
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            1765..1918
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            1919..2030
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            2031..2155
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            2156..2319
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            2320..2442
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            2443..2522
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            2523..2565
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            2566..2675
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            2676..2772
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            2773..2845
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            2846..3017
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            3018..3211
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            3212..3300
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            3301..3381
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
     exon            3382..3901
                     /gene="Atp13a4"
                     /gene_synonym="RGD1306927"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgggggacc accttgggaa gagccagcat gctttactca acgaagggga cgagaatgag
       61 atggaaatat ttggctatcg gactcaaggc tgtcggaagg ctctttgtct cattggatcc
      121 atcttttctc ttggaatgct cccattggta ttttattgga gaccagcttg gcgtgtatgg
      181 gcaaactgtg tcccatgttc cctgcaagaa gcagacattg tgttgctgag gacaacagat
      241 gaattcaaaa tttattcttg gaaaaaggta atgtggatct ccctgtcagc actgagcagc
      301 acgtctggtc tcactcctga ccaccctctc attgcagatg aggaatttat cataaacaga
      361 gccatacgaa agccagacct aaaggtaaga tacataaaag tgcagaaaat acgatatgtt
      421 tggaataatt tagaaggaca gtttcaaaaa attggctctc tggaagactg tctcagttca
      481 gcaaagatac atcagaaatt tggattaggc ctgacttcag aggagcagga gatcaggagg
      541 ctaatatgtg gacctaacgc tattgatgtt gaaatcatac ctatatggaa gctgctcgtc
      601 aaggaggttc taaatccatt ttacatcttt caactcttca gcgtctgttt gtggttcagt
      661 gaagattaca aggaatatgc tcttgccatc atcctcatgt ctgtcatttc catagctttg
      721 accgtgtatg acctcagaca gcaatctgta aaacttcacc atcttgttga atcccataat
      781 agcattacag tctctgtgta tgagcgaaaa gctggagccc aagacctgga atcccgcctc
      841 ctggtgcccg gagatttatt aatcctgaca gggagcagag tgcaaatgcc ctgtgatgcc
      901 gttctgattg atggcagctg tgtggtagat gaaggcatgc tgacaggaga aagcattcct
      961 gtcaccaaaa ccccgctatc ccagacggct agctctgcac cctggaagat gcagtctgaa
     1021 gcagatccta ggcggcacat tctcttctgt ggtacagaag tcatccaggc caaggcggcc
     1081 ggctctggga ctgtgagagc agtggtcctg cagacggggt tcaacactgc aaagggggac
     1141 cttgtgaggt ctatcctgta ccccaagccc atgaacttca agctctacag ggatgccatc
     1201 agattccttc tttgccttgt agggacggcc accattggca tgatctatac tctgtgtgtc
     1261 tatgtgctca gtggggaacc ccctgaggag gtggtgagaa aagccctgga tgttatcacc
     1321 attgcagtcc ctcctgccct ccctgccgcc ctgaccacag gcatcatcta tgcccagagg
     1381 aggctgaaaa agaagggcat attctgcatt agcccccaga ggatcaatgt gtgtggacaa
     1441 ttaaaccttg tctgctttga caagacaggc accttaacga ggggaggctt ggatctttgg
     1501 ggagttgtac cctgtgacca gaatggtttc caggcagtcc acagctttgc ctcaggcgag
     1561 gccgtaccct ggggcccact gtgtgcagcc atggccacct gccactccct gattcttctt
     1621 gatgggacca tccagggaga ccctctggac ctcaaaatgt ttgaagccac ccaatgggaa
     1681 atgactgttt ctggggatga tttccacaac aaggaaatgc tggcacacac catggtagtg
     1741 aagccgccag acacagtggg ccaggtccca gcggaagggc tcgcgatcct ccatcaattc
     1801 ccattctcat ccgcactgca gaggatgacg gtcatcgtcc aggagacggg aggtggccga
     1861 atggcgttca tgaaaggtgc accagagaga gtggccagct tttgccaacc tgacacagtg
     1921 ccaactactt ttattagcga gctccaggtt tatacgacac agggtttccg ggtcatagct
     1981 ctggcctaca agaagctgga aacagactgt cccacaacta ccttgatgag ggagaaggtt
     2041 gaatcagacc tgatatttct gggattgctg atcttggaaa atcggttgaa ggaagagaca
     2101 aggcctgtgt tagaggagct catctctgct cggatacgga ctgccatgat cacaggcgac
     2161 aatcttcaga ctgcaataac agtggccagg aagtctggga tggtttccga aggccagaaa
     2221 gtcattcttg ttgaggcgaa tgaagccact gattcttcat cagcatctat cacttggaag
     2281 ttagtggaag agaagaaaca tggtctattt gggagtcagg acacctacat caacatcaga
     2341 gaagaagtcc cagaaaatgg cagagaagga aattaccatt ttgctctgag tggaaaatcc
     2401 ttccaggtta taagccagca tttcagcagc ttattgccca agatactgat caatgggacc
     2461 atctttgcaa gaatgtctcc tgggcagaag tcaagcctgg tggaagaatt ccagaaactg
     2521 gactactttg tgggtatgtg tggagatggt gccaacgact gtggggctct gaagatggct
     2581 catgttggcg tctcgttatc agagcaggag gcatcggtgg cctctccttt cacttccaaa
     2641 actccaaaca tcgagtgtgt gccccatctc atcaaggaag gccgcgcagc tctcgttacg
     2701 tccttttgca tgtttaagta catggccctg tacagcatga ttcagtatgt tggtgttctg
     2761 ctgctctact ggaaaacaaa cagcctctcg aattaccagt ttctattcca ggatctggcc
     2821 atcacgactc ttattggtgt aacaatgaat ttgaatggtg ccaacccgaa gctagtgccc
     2881 ttcagacctg cgggaaggct gatctcacca cctctgctgc tctcagttat cctcaacatc
     2941 cttctcagct tggctatgca catcgtgggc ttcatcctgg tgcagaagca gccttggtat
     3001 tccatggact atcacagtgt ctgtccagtg agaaatgaga gtgtttcagc cttatcagca
     3061 tctcccaacg ttcctgagaa aaccagaagt aacagcacct ttgcgagttt tgagaatact
     3121 acaatatggt ttttgggaac gatcaactgt atcgttgtgg ctcttgtatt ctctaaagga
     3181 aaaccattta ggcagcccac ctatacaaac tatatatttg tccttgtgct gattttacag
     3241 atgggcgtat gtcttttcat tctatttgcg gatatcccag agttgcatag gcgtttggac
     3301 ctgctgtgca ctcccgtcct gtggagagtc tacattctca tcatggtcag ctccaacttc
     3361 gttgtgtccc ttgctgtgga gaaggccatt attgaaaacc gtgctctatg gacagcggtc
     3421 aagagatgtt ttggttatca ttcaaaaagc cagtatcggg tatggcagag gaacctggcg
     3481 actgattcaa gctggccccc cctaaaccaa acctcctact ctgatatgca gggggtgtcc
     3541 tacagcaacc ctgtgtttga gagcaacgag gagcaactct gaaggaaatc gatatctaag
     3601 cactcgtcaa actgaagaga aaaagagccc gcttcagaga ctctcaacgc catcaggtgg
     3661 agatggggac taaactccca gctctggtga caaagctaaa ttggctcaag cggagtctat
     3721 ggagaacaat gtccctagaa ggtgactttc ctcttggctt ctgatgcact gatgacaccc
     3781 attgaactaa gaatgaagca agggttgcca tgagccaaaa gatgggcagg tatcaggagg
     3841 agagcatatc ttcttagaat aattctttct caaaaaataa aaatgaaatg agggaaggcc
     3901 a
//
