LOCUS       XM_039103612            4901 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ATPase phospholipid transporting 11B
            (putative) (Atp11b), transcript variant X1, mRNA.
ACCESSION   XM_039103612
VERSION     XM_039103612.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 9, 2024 this sequence was replaced by
            NM_001427027.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4901
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4901
                     /gene="Atp11b"
                     /note="ATPase phospholipid transporting 11B (putative);
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 mRNAs, 46 ESTs, 1 long SRA read, 11
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 167 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:361929"
                     /db_xref="RGD:1561719"
     CDS             303..3830
                     /gene="Atp11b"
                     /codon_start=1
                     /product="phospholipid-transporting ATPase IF isoform X1"
                     /protein_id="XP_038959540.1"
                     /db_xref="GeneID:361929"
                     /db_xref="RGD:1561719"
                     /translation="MWRWVRQQLGFDPPHQSDTRTIYIANRFPQNGLYTPQKFIDNRI
                     ISSKYTVWNFVPKNLFEQFRRVANFYFLIIFLVQLMIDTPTSPITSGLPLFFVITVTA
                     IKQGYEDWLRHNSDNEVNGAPVYVVRSGGLVKTRSKNIRVGDIVRIAKDEIFPADLVL
                     LSSDRLDGSCHVTTASLDGETNLKTHVSVPETAVLQTVANLDSLIAVIECQQPEADLY
                     RFMGRMIITQQMEEIVRPLGPESLLLRGARLKNTKEIFGVAVYTGMETKMALNYKSKS
                     QKRSAVEKSMNTFLIIYLIILISEAIISTILKYTWQAEEKWDEPWYNQKTEHQRNSSK
                     ILRFISDFLAFLVLYNFIIPISLYVTVEMQKFLGSFFIGWDLDLYHEESDQKAQVNTS
                     DLNEELGQVEYVFTDKTGTLTENEMQFRECSINGLKYQEINGKLVPEGPSPDSAEGND
                     PYLGSLSHLSSSAHLTATSLRTSPESETELIKEHDLFFKAVSLCHTVQISNVQTDGIG
                     DGPWQPNLAPTQLEYYASSPDEKALVEAAARAGIIFIGISEETMEVKVLGRVERYKLL
                     HILEFDSDRRRMSVIVQAPSGEKLLFAKGAESSILPKCIGGEIAKTRIHVDEFALKGL
                     RTLCIAYRQFTAEEYEDVNRRLFEARTSLQRREEKLAGVFQYIEKDLVLLGATAVEDR
                     LQDKVRETIEALRMAGIKVWVLTGDKHETAVSVSLSCGHFHRTMNILELINQKSDSGC
                     AEQLRQLARRITEDHVIQHGLVVDGTSLSLALREHEKLFMEVCRNCSAVLCCRMAPLQ
                     KAKVIRLIKISPEKPITLAVGDGANDVSMIQEAHVGIGIMGKEGRQAARNSDYAVARF
                     KFLSKLLFVHGHFYYIRIATLVQYFFYKNVCFITPQFLYQFYCLFSQQTLYDSVYLTL
                     YNICFTSLPVLIYSLLEQHIDPHVLQSKPTLYRDISKNRLLSMKAFLYWTVLGFSHAF
                     IFFFGSYFLIGKDTSLLGNGQMFGNWTFGTLVFTVMVITVTVKMALETHFWTWINHLV
                     TWGSIIFYFIFSLFYGGILWPFLGSQNMYSVFIQLLSSGSAWFAILLMVVSCLFVDVV
                     KKVFDRQLHPTSTQKAQLAEAPSGVKCLDSICCFPGETPCASVGRVLDRVIGRCSPNH
                     ISRLWSASDPFYTNDRSILTLSPMDSSTC"
ORIGIN      
        1 gcggggcggc gccgtggggg cggcggtgct tcgggtgaca acggtcagag atgaaggtgg
       61 ccgcggcgca gcggggagtt gagctgcgcc gggcgcggtt ggcagccagg ctgcgcctgt
      121 aggacctcgg gaccggggtg gcgggatggg gacccgactc gggtagaaag gcggcagcgg
      181 cagagagcgg aacttaagtc cgaggggctc gcctgctccg gtcacactcg cagtcctctt
      241 ccacctgctg ccgctcggcc ccgcgtcccg cgggccacga cggcgtcggc gacggagggg
      301 gcatgtggcg ctgggtccgg cagcagctgg gttttgaccc accacatcaa agtgacacaa
      361 gaactattta catagccaac agatttcctc agaatggcct ttacacacct cagaaattta
      421 tagataaccg gatcatttca tctaagtata ctgtatggaa ttttgtccca aaaaatttgt
      481 ttgaacaatt cagaagagtg gcaaactttt attttcttat tatatttttg gttcagctca
      541 tgattgatac acctaccagt ccaatcacca gtgggcttcc attgttcttc gtgataacag
      601 taactgccat aaaacagggt tatgaagact ggttacgcca taactcagat aatgaagtaa
      661 atggagctcc tgtttatgtt gttaggagtg gtgggcttgt caaaactaga tcaaaaaaca
      721 ttcgggtggg tgatattgtt cgtatagcca aagatgaaat ttttcctgca gatttggtgc
      781 ttctgtcctc agatcgactt gatggttcat gtcatgttac aaccgctagt ttggatggag
      841 agacaaacct aaagacacat gtgtccgttc cagaaacagc agtattacaa acagttgcca
      901 atttggacag tctcatagct gtaatcgaat gccaacagcc agaagcagat ttatacagat
      961 ttatgggacg aatgataata acacagcaaa tggaagaaat tgtaagacct ctgggaccag
     1021 agagtctctt gcttcgtgga gccagattaa aaaatacaaa agaaattttt ggtgtggctg
     1081 tatacactgg gatggaaaca aagatggcat tgaattacaa gagcaagtca cagaaaagat
     1141 ctgctgtaga gaaatcaatg aacacatttt taataattta tctaataatc cttatttctg
     1201 aggccatcat cagtactatc ttgaaatata cctggcaagc tgaagaaaaa tgggatgaac
     1261 cttggtataa ccaaaaaaca gaacatcaga gaaatagtag taagattctg agatttattt
     1321 ctgacttcct tgcttttttg gtactctaca atttcatcat cccaatttct ctatatgtga
     1381 cagttgagat gcagaagttt cttggatcat tttttattgg ctgggatctt gatctgtacc
     1441 atgaagagtc agatcagaaa gctcaagtca atacttctga tctgaatgaa gagcttgggc
     1501 aggtggaata tgtgtttaca gataaaactg gaacattgac agaaaatgag atgcagtttc
     1561 gagaatgttc aattaatggc ctgaaatacc aagaaatcaa tggtaaactt gtacctgaag
     1621 gaccaagccc agactccgca gaaggaaatg acccttacct tggtagttta tcccatctca
     1681 gcagctcagc ccatcttaca gccacttctc ttagaaccag tcctgagagt gaaacggagc
     1741 taatcaaaga acacgatctc ttctttaaag cagtcagtct ttgccatact gtacagatca
     1801 gcaatgttca aactgatggc attggtgacg gcccctggca gcccaacctg gcacctacac
     1861 agctggagta ctatgcatcg tcaccagatg aaaaggctct ggtagaagct gcagcaagag
     1921 ctggtattat atttataggc atttctgaag aaactatgga ggttaaagta cttggaagag
     1981 tggaaaggta caaactgctt cacattctgg aatttgactc agaccgtagg aggatgagtg
     2041 tgattgttca ggcaccttca ggcgagaagc ttttatttgc taaaggagca gaatcttcaa
     2101 ttctccctaa atgtataggt ggagaaatag caaaaaccag aattcatgtt gatgaatttg
     2161 ctttgaaagg actgcggaca ctgtgtatag cttatagaca gtttacagct gaagagtatg
     2221 aagatgtaaa caggcgcctg tttgaggcca ggacttcctt gcagcgtcgg gaagagaagc
     2281 tggctggcgt cttccagtac attgagaaag atctggtgtt gctaggagct acagcagtgg
     2341 aagatagact acaagataaa gttcgagaaa ccattgaagc actgagaatg gctgggatta
     2401 aagtatgggt acttactgga gataaacatg aaacagctgt tagtgttagt ttgtcctgtg
     2461 gacattttca tagaactatg aatatcctgg aacttatcaa ccagaagtca gacagtggat
     2521 gtgctgaaca gttgagacag cttgccagga gaattacaga ggaccatgtg atccagcatg
     2581 ggctggtagt agacgggacc agcttatctc tggcactcag ggagcatgaa aagctattta
     2641 tggaagtttg cagaaactgt tcggctgtat tatgctgtcg catggcacct ttacagaaag
     2701 caaaagtgat aagactgata aaaatctccc ctgagaaacc gataactctg gctgttggag
     2761 atggtgctaa tgacgtaagc atgatacaag aagcacatgt tggcatagga atcatgggta
     2821 aagaaggaag gcaagctgca agaaacagtg actatgcagt agctagattt aaatttctct
     2881 ccaaattact ttttgttcat ggtcattttt attatattag aatagctacc cttgtacagt
     2941 atttttttta taagaatgtg tgctttatca caccccagtt tttataccag ttctactgtt
     3001 tgttttctca acaaacactg tatgacagcg tgtacctgac tttatacaat atctgtttta
     3061 cttccctacc tgttctcata tatagtcttt tggaacagca tatagaccca catgtattac
     3121 agagcaagcc taccctctat cgggacatta gtaaaaaccg tctcttgagc atgaaagcat
     3181 ttctttactg gaccgtcctg ggtttcagcc atgccttcat tttcttcttt ggatcctact
     3241 ttctaatagg gaaggataca tctctgcttg gaaatggcca gatgtttgga aactggacat
     3301 tcggtacatt ggtcttcaca gtcatggtta tcacagtcac ggtgaagatg gcattggaaa
     3361 ctcatttctg gacttggatc aaccatcttg ttacctgggg atctattata ttttacttta
     3421 tattctcttt gttttatggt gggattctct ggccattttt gggctcccag aatatgtact
     3481 ctgtcttcat tcagctcctg tcaagtgggt cagcttggtt tgccatactc cttatggttg
     3541 tttcttgtct ctttgttgat gttgtgaaga aagtgtttga tcgacagctt catcctacaa
     3601 gtacacaaaa ggcacagctt gctgaagccc cttcaggtgt caagtgcttg gactccatat
     3661 gctgtttccc tggagagacc ccgtgcgcat ctgttggaag agtgctggac cgagtcatag
     3721 gacggtgtag tcccaaccat atcagcaggc tgtggagtgc gtcggatccg ttctatacca
     3781 atgacaggag catcttgact ctctcgccaa tggactcatc aacttgttag agggacagta
     3841 ggactttgtg ggatcaagtt cacttgtcct caggtctcgg gtcaccaccc tgttgttaaa
     3901 ggacagttac tttctggaat ctctgaggag ttgagacttt ctcagagtcc ctgggaaaca
     3961 ggcaatcaca tgaacccttc cccttcccct tagtttgaat gtgaatatat tacaatttgg
     4021 aaataaagag atcctaacaa tctctttgtc tgctttgtcc cttctgctca tgggactcct
     4081 ggtggtattg cagcctttgc tgaggccact gtactttaat atcaaggtag agaaaggggt
     4141 cattcttggt tatgcgtagt ttaggatgag tgtggtttgg gactcttcta tttaaatctg
     4201 cttctgtaaa ttatgctaaa gatttgcctt gagaactcta ttttttttat tagattatat
     4261 ttgaagcttt tcgtggggaa agttaatgtg aatattaagg aattttggtc cttcagtgac
     4321 ctgtgttgtt aatccattag tgctttttaa gtcacagagc atgtttccaa ccgttgtctt
     4381 ttgcagtgtg ggtagtaagc ttatactgac accaaactca tgctgtaaca ccaccactga
     4441 agctgatcct acaagtgcaa agggagtttt gcatctcatg tccaagtcag agttagggcc
     4501 attcactaga cctcaaattg gtgtttgcta atatttttgt ggccaactgt gtaaacttgt
     4561 agtgggtaaa ttcaatacca ttgtcatatt aatttattgc atctgtctta tcttttgcat
     4621 gcttcaacct ggctaatata tttaaatcct accacacccc ctcctctctt ccccccatta
     4681 ttaccttcct ccctctccag agactctgtt catagtttta tgacaatatt gtaaagttca
     4741 attgtatcaa taaaaaacaa gtttggacag tgtttaaata ttgcaaatat atttaattat
     4801 ataaattgaa atataagcca taaagtcttc ctttggccca cttacaattg ctcttgactt
     4861 gctgtaaatc aaccttgaga ataaaggcct tttgttaagg a
//
