LOCUS       NM_001141935            5474 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus ATPase phospholipid transporting 10A (putative)
            (Atp10a), mRNA.
ACCESSION   NM_001141935 XM_344901
VERSION     NM_001141935.3
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5474)
  AUTHORS   Takatsu,H., Baba,K., Shima,T., Umino,H., Kato,U., Umeda,M.,
            Nakayama,K. and Shin,H.W.
  TITLE     ATP9B, a P4-ATPase (a putative aminophospholipid translocase),
            localizes to the trans-Golgi network in a CDC50 protein-independent
            manner
  JOURNAL   J Biol Chem 286 (44), 38159-38167 (2011)
   PUBMED   21914794
  REMARK    Erratum:[J Biol Chem. 2015 Jan 9;290(2):886]
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Sep 1, 2022 this sequence version replaced NM_001141935.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.3413.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-167               JAXUCZ010000001.1  118692478-118692644
            168-724             JAXUCZ010000001.1  118694600-118695156
            725-929             JAXUCZ010000001.1  118774279-118774483
            930-1015            JAXUCZ010000001.1  118815234-118815319
            1016-1122           JAXUCZ010000001.1  118825315-118825421
            1123-1254           JAXUCZ010000001.1  118825797-118825928
            1255-1385           JAXUCZ010000001.1  118827018-118827148
            1386-1638           JAXUCZ010000001.1  118828716-118828968
            1639-1856           JAXUCZ010000001.1  118831626-118831843
            1857-2051           JAXUCZ010000001.1  118835108-118835302
            2052-2652           JAXUCZ010000001.1  118837935-118838535
            2653-2756           JAXUCZ010000001.1  118844168-118844271
            2757-2883           JAXUCZ010000001.1  118844379-118844505
            2884-3068           JAXUCZ010000001.1  118846865-118847049
            3069-3393           JAXUCZ010000001.1  118852167-118852491
            3394-3470           JAXUCZ010000001.1  118854793-118854869
            3471-3596           JAXUCZ010000001.1  118857879-118858004
            3597-3797           JAXUCZ010000001.1  118861323-118861523
            3798-3878           JAXUCZ010000001.1  118863792-118863872
            3879-3983           JAXUCZ010000001.1  118863965-118864069
            3984-4171           JAXUCZ010000001.1  118864479-118864666
            4172-5474           JAXUCZ010000001.1  118864812-118866114
FEATURES             Location/Qualifiers
     source          1..5474
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..5474
                     /gene="Atp10a"
                     /note="ATPase phospholipid transporting 10A (putative)"
                     /db_xref="GeneID:365266"
                     /db_xref="RGD:1306150"
     exon            1..167
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            168..724
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     CDS             264..4790
                     /gene="Atp10a"
                     /EC_number="7.6.2.1"
                     /note="probable phospholipid-transporting ATPase VA;
                     ATPase, class V, type 10A"
                     /codon_start=1
                     /product="phospholipid-transporting ATPase VA"
                     /protein_id="NP_001135407.1"
                     /db_xref="GeneID:365266"
                     /db_xref="RGD:1306150"
                     /translation="MERESAAAEEPASPGRRRPRRRRWEGRTRTVRSNLLPSLGTEDS
                     TAGASKGERLLMRGCIQHLADNRLKTTKYTLLSFLPKNLFEQFHRLANVYFVFIALLN
                     FVPAVNAFQPVLALAPVLFILAVTAIKDLWEDYSRHRSDHEINHLGCLVFSREEKKYV
                     NRYWKEIRVGDFVRLCCNEIIPADILLLSSSDPDGLCHIETANLDGETNLKRRQVVRG
                     FSELVSEFNPLTFTSVIECEKPNNDLSRFRGCIIHSNGEKAGLHKENLLLRGCTIRNT
                     EAVAGIVIYAGHETKALLNNSGPRYKRSQLERQMNCDVLWCVLLLVCISLFSAVGHGL
                     WVRRYQEKKALFDVPESDGSSLSPATAAVYSFLTMIIVLQVLIPISLYVSIEIVKVCQ
                     VYFINQDIELYDEETDSQLQCRALNITEDLGQIKYIFSDKTGTLTENKMVFRRCTVSG
                     IEYSHDANAQRLAKYQEADSEEEEMVSKVGPISHRGSTGSHQSIWMTHKTQSIKSHRR
                     TGSRAEAKRASMLSKHTAFSSPMEKDITPDPKLLEKVSECDRFLSIARHQEHPLAHLS
                     PELSDVFDFFIALTICNTVVVTSPDQPRQKVRVRFELKSPVKTIEDFLRKFTPSRLAS
                     GCSSIGNLTNNKSSNKSGSTFLPSLSQDNMLLRLEERLGQTAPVIASNGYASQASQAE
                     SWTSECTSEQKCPGDQREQQEGELRYEAESPDEAALVYAAKAYNCALVDRLHDQVSVE
                     LPHLGRLTFELLHTLGFDSIRKRMSVVIRHPLTDEINVYTKGADSVVMDLLLPCSSDD
                     ARGRHQKKIRSKTQNYLNLYAVEGLRTLCIAKRVLSKEEYACWLQSHIEAETSVESRE
                     ELLFQSAVRLETNLHLLGATGIEDRLQDGVPETIAKLRQAGLQIWVLTGDKQETAINI
                     AYACKLLDHGEEVITLNADSREACAALLDQCLCYVQSRNSRSVPQNSESSFSVGFSFN
                     PASTSTDSSPSPSLVIDGRSLAYALEKSLEDKFLFLAKQCRSVLCCRSTPLQKSMVVK
                     LVRNKLKAMTLAIGDGANDVSMIQVADVGVGISGQEGMQAVMASDFAVPRFRYLERLL
                     IVHGHWCYSRLANMVLYFFYKNTMFVGLLFWFQFYCGFSASAMIDQWYLIFFNLLFSS
                     LPQLVTGVLDKDVPADMLLRKPQLYKSGQNMEEYSPRAFWLNMVDAAFQSLVCFFIPY
                     LAYYDSDVDVFTWGTPVTAIALFTFLLHLGIETKTWTWLNWLACGFSTFLFFSVALIY
                     NTSCATCYPPSNPYWTMPTLLGDPLFYLTCLIAPVAALLPRLFFKALQGSLFPTQLQL
                     GRQLAKKSLNKFSVPKETFAQGQPPGHTEPELSERKAMGPFESLPRDCASQASQFTQQ
                     LACSPEASGEPSAVDTNMPLRENTLLEGLGSQASGSAMPREAISEDCPGDSKRKSTSA
                     SQTAPLSSLFHLPSFGSLNWISSLSLASGLGSVLQLSRSSLQMDKQDGEFLSNPPQPD
                     QDLHNLQGQVTGYF"
     exon            725..929
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            930..1015
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            1016..1122
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            1123..1254
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            1255..1385
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            1386..1638
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            1639..1856
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            1857..2051
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            2052..2652
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            2653..2756
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            2757..2883
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            2884..3068
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            3069..3393
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            3394..3470
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            3471..3596
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            3597..3797
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            3798..3878
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            3879..3983
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            3984..4171
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
     exon            4172..5474
                     /gene="Atp10a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtctgttct gagaagggta aggagacctc tcaccctggg gttggcaggg actagaaggg
       61 gcagagttaa accagctggt gccagttccc ctagggcctt aagggacctt tgcctgagga
      121 gtcaacattt gactttgaaa gcaacggggg agtcctagga gctccgggag gggaacccgt
      181 gctgccgcgc ccgggtggcg ggcaatgatc acctaggagg ctggcgcgag cggcagagga
      241 gccgggcgcg gcgacacgcg gccatggagc gggagtccgc ggcggccgaa gagcccgcat
      301 ccccggggcg gcggcgtcct cgacgaaggc gctgggaggg ccggacgcgc acggtgcgct
      361 ccaacctgct gccgtccctg ggcaccgaag actccactgc cggagcctcc aagggcgaac
      421 ggctgctgat gcgcggctgc atccagcacc tggccgacaa ccgcctcaag accaccaagt
      481 acactctgct gtccttcttg cccaagaatc tcttcgaaca gttccaccgc ctagccaatg
      541 tgtacttcgt cttcatcgcg ctactcaact ttgtgccggc agtgaacgct ttccagccgg
      601 tcctggcact ggcgcctgtg ctctttattc tggcggtcac tgccatcaag gacctgtggg
      661 aggactacag ccgccaccgt tcggaccacg aaatcaacca cctgggctgc cttgtcttca
      721 gcagggaaga aaagaagtat gtgaatcgat actggaaaga aatccgagtg ggcgactttg
      781 tccgtctttg ctgcaatgaa atcatacctg cggacatttt gctgctgtca tccagtgacc
      841 ctgatgggtt gtgccacatc gagactgcta acctggatgg agagaccaac ctgaagcggc
      901 ggcaagtggt ccgtggcttc tcggagcttg tctctgaatt caatccctta acgttcacca
      961 gcgtaatcga atgtgagaag ccaaacaatg acctgagtag gtttcgtggc tgcataatcc
     1021 acagcaatgg ggagaaggct gggctgcata aggaaaactt gctgcttcga gggtgcacca
     1081 tcagaaacac agaagcagtg gctgggattg tcatctatgc aggacatgaa accaaagccc
     1141 tcctgaacaa tagtgggccc cgctacaagc gcagccagct tgaaaggcag atgaactgtg
     1201 atgtcctctg gtgtgtcctt ctcctcgttt gtatatctct attttcagca gttggacatg
     1261 gattgtgggt tcggcgctat caagagaaaa aagcactgtt tgatgttccc gagtctgatg
     1321 gcagctcttt atccccagcc actgctgcag tttactcgtt tttgacaatg ataattgttc
     1381 tgcaggtttt gattccaatt tccttatatg tttccattga aattgttaaa gtgtgtcaag
     1441 tatacttcat taaccaagat atagagctgt acgatgaaga gacagattca cagctgcagt
     1501 gccgagctct gaacataaca gaagacttag ggcagataaa atacatcttc tcagacaaaa
     1561 ctggcacatt aactgagaac aagatggtct ttcgaagatg cactgtgtcc ggcatagaat
     1621 attctcatga tgctaatgcc cagcgactgg ccaagtatca agaggcggac tcagaagagg
     1681 aggaaatggt gtccaaggtg ggcccaatat cccaccgtgg cagcactggg agccatcaga
     1741 gcatctggat gactcataag acccagagta tcaagtccca ccggcgtaca ggcagtcggg
     1801 ctgaggccaa gagagccagc atgctgtcta agcacactgc cttcagcagc cccatggaga
     1861 aagacattac ccctgacccc aagctgctgg agaaggtgag cgagtgtgac cggttcctct
     1921 ccattgcaag gcaccaggag caccctctgg cccatctttc accagagctg tctgatgttt
     1981 ttgatttctt catcgcactc accatctgca atacagtagt tgtcacctct ccagaccagc
     2041 cacgacaaaa ggtaagagtg aggtttgagc tgaagtcccc agtgaagacc atagaagatt
     2101 tccttcggaa gttcacaccc agccgcctgg cttctggctg cagcagtatc gggaacctca
     2161 ccaacaataa atccagcaac aaatctggat caacttttct gcccagcctg tctcaggaca
     2221 acatgcttct caggctggag gagaggctag gtcaaacagc gccagtcatt gccagcaatg
     2281 gctatgccag ccaggcaagc caggcggaaa gctggacctc agagtgcacc tcagagcaga
     2341 agtgtccagg ggaccagagg gagcagcaag agggggagct tcgatatgag gctgagagcc
     2401 cagatgaggc tgcgctggtg tatgcagcca aagcctataa ctgtgcactg gtggaccggc
     2461 ttcacgacca ggtgtctgtg gagttgcccc acctaggcag gctcaccttt gagctgctgc
     2521 acacacttgg cttcgactcc atccgcaaga ggatgtcagt ggtgatccga cacccactga
     2581 ctgacgagat caatgtgtac accaaggggg ctgattcagt ggtcatggac cttctgctgc
     2641 cctgttcctc agatgacgcc agaggaaggc atcagaaaaa gatcaggagt aaaacacaaa
     2701 attacctcaa cctttatgca gtagaaggcc tgcgcaccct gtgcattgcc aagagggttc
     2761 tgagcaaaga agaatatgcc tgctggttgc agagccacat agaagctgag acatctgtgg
     2821 agagccgtga ggagctcctc ttccagtctg ctgttcgcct ggagacgaac ttgcacctgc
     2881 tgggtgccac tgggatagaa gaccgccttc aggatggagt acctgaaacc attgccaaat
     2941 tacgacaagc tggcctgcag atttgggttc tcacaggtga caaacaagaa acagccatta
     3001 acattgcata tgcctgcaaa ttgctggacc atggtgaaga ggtcatcaca ctgaatgctg
     3061 attctaggga agcatgtgca gccctgctgg accaatgcct ctgttatgtg caatccagaa
     3121 actctagaag cgtccctcag aactctgaaa gcagcttcag tgtggggttc tctttcaacc
     3181 cagcctccac atccactgac tcgagcccca gcccaagcct tgtgattgat gggagaagtc
     3241 tggcctatgc ccttgagaaa agcctggagg acaaatttct tttccttgcc aagcagtgtc
     3301 gctccgtcct ctgctgccga tcgacgcctt tgcagaaaag catggtggtg aagcttgtca
     3361 gaaacaagct caaggccatg accctggcca taggtgatgg ggccaatgat gtcagcatga
     3421 tccaggtggc agatgtaggc gtggggatct caggccagga aggcatgcag gctgtgatgg
     3481 caagtgactt tgcagtgcca agattccgat acctggagag acttctaatc gttcatggac
     3541 actggtgcta ctccagactg gccaacatgg tgctgtattt cttctacaaa aatacaatgt
     3601 ttgtgggtct cttgttttgg ttccagtttt actgtggctt ttctgcatct gccatgattg
     3661 atcagtggta tctgattttc ttcaatctgc tcttctcatc gcttcctcag ctggtaactg
     3721 gggtgctgga taaagatgtt ccagctgaca tgttgctgag aaagccacag ctttacaaga
     3781 gtggccaaaa catggaggaa tacagtccac gagcattctg gttaaacatg gtggatgctg
     3841 ccttccaaag cctggtctgc tttttcattc cctatctggc ctactatgac tccgatgtgg
     3901 atgtatttac ctgggggacc cctgtcacag caatagcatt gttcaccttc ctgctgcacc
     3961 tgggtattga aaccaaaacc tggacctggc tcaactggtt agcctgtggc ttcagtacct
     4021 ttttgttttt ctccgtggct ctaatttaca acacttcctg tgccacatgc tatcctccat
     4081 ctaaccctta ctggaccatg ccgacattac tgggagaccc tctgttctac ttgacttgtc
     4141 tcatcgcacc tgttgctgca ttgctgccca gattgttttt caaagccctc caggggagcc
     4201 ttttccccac ccaactccag ctaggacgcc agttggccaa gaaatccctc aacaagttca
     4261 gcgttcccaa agagactttt gctcagggac aaccacctgg acacacagaa cctgagctat
     4321 cagaaaggaa ggccatggga ccttttgagt ctctccctag agactgtgcc tctcaagctt
     4381 cccagttcac acagcagctg gcctgttccc cagaggccag tggggagccc agtgcagtgg
     4441 atacaaacat gccactgaga gagaacacct tgctggaagg acttggctct caggcctcag
     4501 ggtctgctat gcccagagag gctatttcag aagactgtcc tggggactcc aagaggaaat
     4561 ccaccagtgc tagtcaaaca gcccccttgt cgtcactctt ccatctgccc agctttggct
     4621 cactaaactg gatctcctca ctatcactgg ccagtggtct gggaagtgtc ttgcaattgt
     4681 ccagaagtag tttacagatg gacaagcagg atggtgagtt cctgtccaac ccaccacaac
     4741 cagatcagga cctgcacaac ttacagggac aagttacagg ctacttctag tatcacctcc
     4801 aaagggccac agccaattgt ggtgacaaag aaatccttga aatggccttt tattttatgt
     4861 aacaaatgtt aatgttattt atgtttatta tttgcacaga agagttctag aaagatgtat
     4921 tttttaaatg tttccaagac atatatagga aaccagaggt accaaaaaag aaagtttatt
     4981 ttttaaaagt tctaagtaga gtatacttat gaaaaataac acatatcttt atctatctat
     5041 atataaagtt taaagaagag tgacacttaa aaggtgtgtc gagatttatt ttttcatctc
     5101 attttgtaag gaaaagcaat atgcattgtt tcttcaacac acatgaccct tgctttctgc
     5161 aggaaggcat aaccatgtgg ccaatcccgt aaagcctggg gtagcagtgg cgggtgtgga
     5221 gacagggcag ggaggaaaga ggacagagag aagggcgtgt ggcctttgag gcaaatacct
     5281 ccattggctt ccaatgttac catcagtgaa caggacagtg aaaccttgag aaaaacccat
     5341 gtgaaatccc tgccaacact caaacttctg ggcaggcatt tcattaggtt cacctcatag
     5401 gtttgacagc tccattgttg tgtgtatttc ttgctaaaat catcacaggc aataaacaac
     5461 cccccacttt gcaa
//
