LOCUS       NM_001191786            4798 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus ATM interactor (Atmin), mRNA.
ACCESSION   NM_001191786 XM_235378
VERSION     NM_001191786.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4798)
  AUTHORS   Goggolidou,P., Stevens,J.L., Agueci,F., Keynton,J., Wheway,G.,
            Grimes,D.T., Patel,S.H., Hilton,H., Morthorst,S.K., DiPaolo,A.,
            Williams,D.J., Sanderson,J., Khoronenkova,S.V., Powles-Glover,N.,
            Ermakov,A., Esapa,C.T., Romero,R., Dianov,G.L., Briscoe,J.,
            Johnson,C.A., Pedersen,L.B. and Norris,D.P.
  TITLE     ATMIN is a transcriptional regulator of both lung morphogenesis and
            ciliogenesis
  JOURNAL   Development 141 (20), 3966-3977 (2014)
   PUBMED   25294941
REFERENCE   2  (bases 1 to 4798)
  AUTHORS   Jurado,S., Conlan,L.A., Baker,E.K., Ng,J.L., Tenis,N., Hoch,N.C.,
            Gleeson,K., Smeets,M., Izon,D. and Heierhorst,J.
  TITLE     ATM substrate Chk2-interacting Zn2+ finger (ASCIZ) Is a
            bi-functional transcriptional activator and feedback sensor in the
            regulation of dynein light chain (DYNLL1) expression
  JOURNAL   J Biol Chem 287 (5), 3156-3164 (2012)
   PUBMED   22167198
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1 and BC105857.1.
            
            On Aug 5, 2017 this sequence version replaced NM_001191786.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.80179.1,
                                           SRR26643289.42840.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-324               JAXUCZ010000019.1  61905343-61905666
            325-450             JAXUCZ010000019.1  61914718-61914843
            451-650             JAXUCZ010000019.1  61916573-61916772
            651-1012            JAXUCZ010000019.1  61918295-61918656
            1013-1015           BC105857.1         227-229
            1016-4798           JAXUCZ010000019.1  61918660-61922442
FEATURES             Location/Qualifiers
     source          1..4798
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..4798
                     /gene="Atmin"
                     /gene_synonym="Asciz; RGD1305781"
                     /note="ATM interactor"
                     /db_xref="GeneID:315037"
                     /db_xref="RGD:1305781"
     CDS             1..2445
                     /gene="Atmin"
                     /gene_synonym="Asciz; RGD1305781"
                     /note="ATM/ATR-Substrate Chk2-Interacting Zn2+-finger
                     protein"
                     /codon_start=1
                     /product="ATM interactor"
                     /protein_id="NP_001178715.1"
                     /db_xref="GeneID:315037"
                     /db_xref="RGD:1305781"
                     /translation="MAATEAAAAESAGPAPGVPVTPASTRGAAAASSPWRPSESRLQG
                     SRPRLARARAAAPVPPARELIQPSVSELSRAVRTNILCTVRGCGKILPNSPALNMHLV
                     KSHRLQDGIVNPTIRKDLKTVPKFYCCPIKGCPRGPDRPFSQFSLVKQHFMKMHAEKK
                     HKCSKCSNSYGTEWDLRRHEEDCGKTFQCTCGCPYASRTALQSHIYRTGHEIPAEHRD
                     PPSKKRKIESQTLSTKTIGPLGDQPAPRQDAHEPRASEVKLAASLEDSCSSHTKKQSF
                     PTPPRCPQKLLLPKPKVALVKLPVMQFSPVPVFVPTADSSAQPVVLGVDHSSAAGAVH
                     LVPLSVGTLILSLDSEACSLKESLPLSKIISPVVEPMNTGVQVNLGKSLCRPLQEGGS
                     VCQKNSISSANVQTDLSYASANLIPSAQWLGPDSSVSSCSQTDLSFDSQVSLPVSVHT
                     QTLVPSSKVTSSIAAQTDAFLDACFQPSGVSRETQTCRIQNRTDDPVPVGHPGLCGDI
                     FEGVHSSYGVPSDNIMSSSLVAETVTHSLVPQSDPKILSQVMEKSAPVLNFSAQNSML
                     PSQNMTDNQTQTIDLLSDLENILSSNLPGQTLDNRSLLSDTNPGPDAQLPSGSAQNSG
                     IDFDIEEFLSASNIQTQTEESELSSMSTEPVLESLDIETQTDLFLSDPCTQPYGLRAG
                     SGFLGLEMFDTQTQTDLNFFLDSSPHLPLGSILRHSSFSMSTDSSDTETQTEGASPAR
                     HAPTLESKVQLSSTETQTMSSGFEPLGNLFLTSNETQTAMDDFLLADLAWNTMESQFS
                     SVETQTCAELHAVSSF"
     exon            1..324
                     /gene="Atmin"
                     /gene_synonym="Asciz; RGD1305781"
                     /inference="alignment:Splign:2.1.0"
     exon            325..450
                     /gene="Atmin"
                     /gene_synonym="Asciz; RGD1305781"
                     /inference="alignment:Splign:2.1.0"
     exon            451..650
                     /gene="Atmin"
                     /gene_synonym="Asciz; RGD1305781"
                     /inference="alignment:Splign:2.1.0"
     exon            651..4798
                     /gene="Atmin"
                     /gene_synonym="Asciz; RGD1305781"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggcggcca cggaggcggc ggcggctgag tctgcgggtc cggccccggg tgtcccggtc
       61 acgccggcga gcacgcgggg agccgccgcc gcctcaagcc cgtggaggcc gtcggagtcg
      121 cgactgcaag gcagtcgacc gcgactggcc agggctcggg ccgcggcccc ggtgccaccg
      181 gcccgggagc tgatccagcc gtctgtgagc gagctgtccc gggctgtgcg caccaatatt
      241 ctgtgcactg tgcgcggctg cggcaagatc ctgcccaaca gtcctgcgct caacatgcac
      301 ctagtcaaga gccaccgact gcaggatggc atagtaaatc caacaataag aaaagatttg
      361 aaaactgtac cgaaattcta ctgttgtcca atcaaaggat gccctcgagg ccctgacaga
      421 ccattttctc agttttctct ggttaaacag cactttatga aaatgcatgc ggagaagaag
      481 cacaagtgca gtaagtgcag taactcctat ggcaccgagt gggacctgag aagacacgag
      541 gaagattgtg gcaagacctt ccagtgtacg tgtggctgtc cctatgccag cagaaccgca
      601 ctgcagtctc acatctaccg gactggccac gagatccctg cagaacacag agacccacct
      661 agtaaaaaaa ggaagataga aagccaaacg ctgtccacta aaaccattgg accactgggt
      721 gaccaaccag cccctcgcca agatgcccat gagccacgtg cttcggaagt gaagctagca
      781 gcctcccttg aagactcttg tagctcccac accaaaaagc agagcttccc aacgcctcct
      841 aggtgccccc agaagctgct tctaccaaag cccaaggtgg ctctggttaa actcccagtc
      901 atgcagtttt cccctgtgcc tgtctttgtg cctacagcgg actcctcggc ccagcccgtg
      961 gtgttaggtg tggatcacag ttctgcagcg ggtgctgtgc acttagtacc cttgtcagta
     1021 ggaaccttga tcctcagcct ggattcagag gcctgctctc tgaaggagag cctacctctc
     1081 tcaaaaatta tcagtcctgt tgtcgagcca atgaatacag gtgttcaggt gaacttgggc
     1141 aaaagtctgt gtcgtccttt gcaagagggc gggagtgtgt gtcagaagaa cagcatttcc
     1201 tcagccaacg tgcagacaga tctgtcatat gcctcagcca acttgatacc ctctgctcag
     1261 tggcttggcc ccgactcctc tgtgtcatcg tgttctcaga ctgacctgtc ctttgattct
     1321 caagtgtccc ttcctgttag tgtccacacc cagacgttgg tgcccagctc taaggtcact
     1381 tcatccatag ctgcccagac agatgcgttt ctagacgcct gtttccagcc cagtggggtc
     1441 tccagagaaa cccaaacctg taggatacaa aaccgcacag atgacccagt gccggtaggc
     1501 caccctgggc tgtgtgggga catttttgaa ggcgtccatt cgtcatatgg tgtgcccagc
     1561 gacaacatca tgagtagcag tttagttgca gagacagtaa ctcacagtct ggtacctcag
     1621 agtgacccca agatcctaag ccaagtcatg gaaaagtctg cgcccgtgtt aaacttcagt
     1681 gcccagaaca gcatgcttcc ttcacaaaac atgaccgata accagaccca aaccatagat
     1741 ctactgagtg acctagaaaa catcttgtcc agtaatctgc caggccaaac gctggataac
     1801 cggagtctct tgtctgacac aaaccccggg cctgacgccc agctcccatc aggttcagcg
     1861 cagaactccg ggattgattt tgatattgaa gagttcctct cagcctcaaa tatccagact
     1921 cagactgagg agagtgaact cagctccatg agcactgagc ccgtcttgga gtccctggac
     1981 atcgagacac agactgacct cttcctgtcc gatccctgca cacagcccta tgggctcagg
     2041 gcaggttcgg gtttcctggg cctcgagatg tttgacacac agacccagac agacttgaac
     2101 ttcttcctgg acagcagtcc tcacctgccc ctgggcagca tcctgagaca ctctagcttc
     2161 tccatgagca ccgactcctc tgacacagaa acccaaacgg aaggggcctc cccagctcga
     2221 catgcaccca cgctggagag caaggtccag ctgagcagca cagaaacaca gaccatgagt
     2281 tctggcttcg agcccctggg gaacttgttc ctcaccagca acgagactca gacagcaatg
     2341 gatgacttcc ttctagctga tttggcctgg aatacgatgg agtcccagtt cagttctgtg
     2401 gaaacccaga catgcgcaga gctgcatgct gtctccagct tctgaaagtg caaccaggca
     2461 ccccactcct tgtgggctta gaacatgggg acagggacag cggcatggac tggggtgcag
     2521 tcagtggggc agctgtttgg gttctctgca gttcttggtg ttttgtactc gtgaacacaa
     2581 gattggtgtg caaatgtgag tgtattataa agtgtaaagt gttgctctta agtgtcgcct
     2641 gcgtctgctc ctgtgtagcc attctatttt acactgtaaa acttagacct gtctagttaa
     2701 agcctagctt accaggcagt agggtgcaag ctttgcaact gctttaactg aggaacggca
     2761 cacttaaatg gcacctcaaa cgctcagaca acgcttgtgt ggctgctgac tcctgagatg
     2821 ccaccacctt gccttgtcac gtccctctga cttggaagca ccaggggaag ccatagctgt
     2881 ctttagcttt tatgacagtt tttagtctct gctgtctctt ctctcccaag ctgtgactgc
     2941 tggcagcttt gtgtgccatc cttctctctg tgaggtgacc ggccattgtg ggaacagcga
     3001 gcacttagtg taaataacag tttagtaaga ggaaggcatc cagcctgtgg agatgtgcac
     3061 tgtggaaacc catcgtcttt ttttttgttg ttgtttttta tcttgggctg atcctgcttc
     3121 atggaaaagc ttttctcttc tctcttgata gtgttgatca aaaagatctc tgtgaccaaa
     3181 tctgtgggat tgccacgtga cagacagtag ccagctgtaa ttacacaggg gctagatggt
     3241 agttactggt tgaccccaga gcttctagct ctctataaat tggggttcct gtgactcccc
     3301 actctttgtg ctcggttgat ttgctagaac tcagggatac cgtttctgtg aagggttaga
     3361 ctgggtagaa agggggcaga gtacgtccat ggcttctcta ggcacaacac caaccacgtc
     3421 tgtgtggttc cttgcagaaa ccttccaaac ccagtcttgc agggttaatg gctccttcgt
     3481 tgtgtgggta gagagttaac ttaaaccatt agtgatcaac ttaaccttga gtgttaccct
     3541 tcccagttgc gttggggggt agggatgaag ctgtaaatat cccaaccttt cagtcattag
     3601 ttatgccttg gtctcccctg tgacttgtcc ccatcctaat attacccgga agctagcagc
     3661 taccaatgac ctcatagcaa gcaaaagcaa aatatgtttc cgaatgcttc gggtttgggg
     3721 gaagttatgt gcaaatacac actttacatc accaccccac aaacatcctt cctgctccac
     3781 aggagaccgt gggcctaccc gactgtaatg tactcagaga ccctctaagg attaaaaagg
     3841 aaaatgtggg atgaggaaaa gacatttctg cccagccccc tgtcagtatg ctgcacttcg
     3901 aaccttgata ggaggagcag ggccctcaga gtctttcctt ccatccaccc ccatcttttc
     3961 cttcgctcag gcaaacagat gatgtgtacc ttgagactag caactgtaga atagatccat
     4021 cagtagtatg ctaacctaga gcctgttagg atacattctt taaagaggaa aaagtctgga
     4081 gactaactgc tccaatagat aaaacactct cattctgagt ggagagtgag gtctagcatg
     4141 ccttgggggg ctctctgtgc taagtagatc atggattcat agctgttgcc caactcagag
     4201 gcaaatcaga atgagcacag cctggggacc ctttcagtct agcttggaaa tccctgttct
     4261 ttctgtagca taggtttgtg ctgccacaag ctgaaccttc aaaataaaac ctaagggggc
     4321 tggtgatgac tcattaaata aattggtatt gctgccgtcc tgtcccattc acccgatgca
     4381 aaggacttgg taatgggcta ataacacacc cggcagagga gtgcaaccca ggagctaaac
     4441 cgtggttttg gtcacagtcg tctgtgaatg tgagtttcag aagagacata aagccttaac
     4501 ttagattttc tgttgtgttg gaattgtcgc tgccttaacg ctcaagccct gtttaagccc
     4561 tccggccccg ggagagctgc atgtgtgctc gtggttcttt gtaaatagaa gtgcagtgat
     4621 ctatggcttt aagtttttgt gtctgtggca atgtgtcttt atatatagtt acaggaaaaa
     4681 gaatggagca tgtaattgtc cttcatgtgc aagaactgtt cccaccaaac cttagttacc
     4741 tgaactcccc taaggttgta aacataaatt cagtgattaa agagaattct acaccttt
//
