LOCUS       NM_001044241            2050 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus atlastin GTPase 3 (Atl3), mRNA.
ACCESSION   NM_001044241 XM_001076952 XM_001076980 XM_219541
VERSION     NM_001044241.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2050)
  AUTHORS   Wang,S., Tukachinsky,H., Romano,F.B. and Rapoport,T.A.
  TITLE     Cooperation of the ER-shaping proteins atlastin, lunapark, and
            reticulons to generate a tubular membrane network
  JOURNAL   Elife 5, e18605 (2016)
   PUBMED   27619977
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2050)
  AUTHORS   Chen,S., Desai,T., McNew,J.A., Gerard,P., Novick,P.J. and
            Ferro-Novick,S.
  TITLE     Lunapark stabilizes nascent three-way junctions in the endoplasmic
            reticulum
  JOURNAL   Proc Natl Acad Sci U S A 112 (2), 418-423 (2015)
   PUBMED   25548161
REFERENCE   3  (bases 1 to 2050)
  AUTHORS   Chang,J., Lee,S. and Blackstone,C.
  TITLE     Protrudin binds atlastins and endoplasmic reticulum-shaping
            proteins and regulates network formation
  JOURNAL   Proc Natl Acad Sci U S A 110 (37), 14954-14959 (2013)
   PUBMED   23969831
REFERENCE   4  (bases 1 to 2050)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   5  (bases 1 to 2050)
  AUTHORS   Hu,J., Shibata,Y., Zhu,P.P., Voss,C., Rismanchi,N., Prinz,W.A.,
            Rapoport,T.A. and Blackstone,C.
  TITLE     A class of dynamin-like GTPases involved in the generation of the
            tubular ER network
  JOURNAL   Cell 138 (3), 549-561 (2009)
   PUBMED   19665976
REFERENCE   6  (bases 1 to 2050)
  AUTHORS   Cao,Z., Li,C., Higginbotham,J.N., Franklin,J.L., Tabb,D.L.,
            Graves-Deal,R., Hill,S., Cheek,K., Jerome,W.G., Lapierre,L.A.,
            Goldenring,J.R., Ham,A.J. and Coffey,R.J.
  TITLE     Use of fluorescence-activated vesicle sorting for isolation of
            Naked2-associated, basolaterally targeted exocytic vesicles for
            proteomics analysis
  JOURNAL   Mol Cell Proteomics 7 (9), 1651-1667 (2008)
   PUBMED   18504258
REFERENCE   7  (bases 1 to 2050)
  AUTHORS   Rismanchi,N., Soderblom,C., Stadler,J., Zhu,P.P. and Blackstone,C.
  TITLE     Atlastin GTPases are required for Golgi apparatus and ER
            morphogenesis
  JOURNAL   Hum Mol Genet 17 (11), 1591-1604 (2008)
   PUBMED   18270207
REFERENCE   8  (bases 1 to 2050)
  AUTHORS   Zhu,P.P., Patterson,A., Lavoie,B., Stadler,J., Shoeb,M., Patel,R.
            and Blackstone,C.
  TITLE     Cellular localization, oligomerization, and membrane association of
            the hereditary spastic paraplegia 3A (SPG3A) protein atlastin
  JOURNAL   J Biol Chem 278 (49), 49063-49071 (2003)
   PUBMED   14506257
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from DQ450893.1.
            
            On or before Aug 24, 2006 this sequence version replaced
            XM_219541.4, XM_001076952.1, XM_001076980.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DQ450893.1, FQ221502.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132292, SAMD00132295
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2050
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..2050
                     /gene="Atl3"
                     /gene_synonym="RGD1309871"
                     /note="atlastin GTPase 3"
                     /db_xref="GeneID:309187"
                     /db_xref="RGD:1309871"
     exon            1..299
                     /gene="Atl3"
                     /gene_synonym="RGD1309871"
                     /inference="alignment:Splign:2.1.0"
     CDS             269..1879
                     /gene="Atl3"
                     /gene_synonym="RGD1309871"
                     /codon_start=1
                     /product="atlastin-3"
                     /protein_id="NP_001037706.1"
                     /db_xref="GeneID:309187"
                     /db_xref="RGD:1309871"
                     /translation="MDPRFQYAVTGDAMENGKPGPVQVVLVHKEQHSFELEERALASV
                     LLQDHIRDLDVVVVSVAGAFRKGKSFILDFMLRYLYSQKEHGHSNWLGDPEEPLTGFS
                     WRGGSDPETTGIQIWSEVFTVKKPCGKEVAVVLMDTQGAFDSQSTVKDCATIFALSTM
                     TSSVQIYNLSQNIQEDDLQQLQLFTEYGRLAMDEIFQKPFQTLMFLVRDWSFPYEYNY
                     GLQGGMSFLDKRLQVKEHQHEEIQNVRNHIHSCFSDVTCFLLPHPGLQVATSPDFDGK
                     LKDIASEFKEQLQTLIPYVLNPSKLMEKEINGSKVTCRGLLEYFKAYIKIYQGEDLPH
                     PKSMLQATAEANNLAAAASAKDIYYSSMEEICGGEKPYLSPDILEEKHQEFKQLALDH
                     FKKTKKMGGKDFSFRYQQELEEEITELYENFCKHNGSKNVFSTFRTPAVLFTGIAVLY
                     IASGLTGFIGLEVVAQLFNCMVGLLLIALLTWGYIRYSGQYLELGGAIDSGAAYVLEQ
                     ASSHIGNSTQAAVRDAIAGRPPADKKSQ"
     exon            300..514
                     /gene="Atl3"
                     /gene_synonym="RGD1309871"
                     /inference="alignment:Splign:2.1.0"
     exon            515..658
                     /gene="Atl3"
                     /gene_synonym="RGD1309871"
                     /inference="alignment:Splign:2.1.0"
     exon            659..763
                     /gene="Atl3"
                     /gene_synonym="RGD1309871"
                     /inference="alignment:Splign:2.1.0"
     exon            764..814
                     /gene="Atl3"
                     /gene_synonym="RGD1309871"
                     /inference="alignment:Splign:2.1.0"
     exon            815..871
                     /gene="Atl3"
                     /gene_synonym="RGD1309871"
                     /inference="alignment:Splign:2.1.0"
     exon            872..964
                     /gene="Atl3"
                     /gene_synonym="RGD1309871"
                     /inference="alignment:Splign:2.1.0"
     exon            965..1103
                     /gene="Atl3"
                     /gene_synonym="RGD1309871"
                     /inference="alignment:Splign:2.1.0"
     exon            1104..1231
                     /gene="Atl3"
                     /gene_synonym="RGD1309871"
                     /inference="alignment:Splign:2.1.0"
     exon            1232..1288
                     /gene="Atl3"
                     /gene_synonym="RGD1309871"
                     /inference="alignment:Splign:2.1.0"
     exon            1289..1360
                     /gene="Atl3"
                     /gene_synonym="RGD1309871"
                     /inference="alignment:Splign:2.1.0"
     exon            1361..1792
                     /gene="Atl3"
                     /gene_synonym="RGD1309871"
                     /inference="alignment:Splign:2.1.0"
     exon            1793..2021
                     /gene="Atl3"
                     /gene_synonym="RGD1309871"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccagagccca ccacacgggc cgggttgggg ctcccggcgg gaaccgggtg gccgaaaccc
       61 ggccctggtc tacgttttag gcgctgggca gggtctgccg agagccctcc tcgttttctc
      121 cctttgcaag gcctaatggg agttgtagtt tagcggtagg aagacccgct cgcccagtcc
      181 cttcccccca tttcctctac gccccggatg agggcgaaga ctcaggacag cggggcccgg
      241 cccagagaag gccgaactac aattcccgat ggacccgaga ttccagtacg cagtcacagg
      301 tgatgccatg gagaatggaa aacctggtcc agtgcaggtc gttttggttc ataaagagca
      361 gcactccttt gagctagaag agagagcctt ggccagcgtc ctcctccaag accatatccg
      421 agatcttgat gtagtggtag tatcagtggc tggtgctttt cgaaagggca aatccttcat
      481 tctggacttt atgctgcgat acttatattc tcagaaggaa catggtcatt caaattggtt
      541 gggtgaccca gaagaaccac tgacaggatt ttcatggcgc ggaggctctg acccagaaac
      601 tactgggatt cagatttgga gtgaagtttt cactgtgaag aagccatgtg ggaaagaggt
      661 tgcagttgtt ctgatggata cccagggggc ctttgacagc cagtcaactg tgaaagattg
      721 tgctaccatt tttgctctaa gcactatgac tagttctgtt cagatttaca atttgtccca
      781 gaatattcag gaagatgatc ttcagcagct acagctcttc acagaatatg gccgtctggc
      841 aatggatgaa attttccaga aacctttcca gacattaatg tttttggttc gagactggag
      901 ttttccttat gaatataact atggactgca aggaggaatg tcgtttttgg ataagcgttt
      961 acaggtgaag gaacatcaac atgaagaaat tcagaacgtt cgaaatcata ttcactcatg
     1021 tttctcggat gtcacctgtt ttctcttacc acatccaggg ctccaggtgg ccacaagccc
     1081 tgactttgat gggaaattga aagatattgc tagtgaattc aaagagcagc tacagactct
     1141 aataccatat gtactaaacc catctaagtt aatggagaag gagatcaatg gttcaaaagt
     1201 cacctgccgg ggactcttgg aatattttaa ggcatatatt aaaatttacc aaggagaaga
     1261 tctgcctcac ccgaaatcca tgcttcaggc cactgctgaa gccaacaacc tggcagccgc
     1321 agcctctgcc aaagacattt actacagcag catggaggag atttgtgggg gagagaaacc
     1381 ttatttgtct ccagacattt tagaagaaaa gcaccaagaa ttcaaacaac ttgctctgga
     1441 ccactttaag aagaccaaaa agatgggtgg gaaggatttt agcttccgtt accagcagga
     1501 gctagaggag gaaatcacag aactgtatga gaacttctgc aaacacaatg gtagcaagaa
     1561 cgtcttcagc accttccgaa cccctgcagt tctgttcaca ggcatagctg tgttgtacat
     1621 agcctcgggc ttaaccggct tcatcgggct tgaggttgtg gctcagctgt tcaactgtat
     1681 ggttggactg ctgttgatag cactccttac ctgggggtac atcagatact ccgggcagta
     1741 tcttgagctg ggtggagcta ttgactctgg tgcagcgtat gtgttagagc aggcttcttc
     1801 tcacattggt aattctactc aggctgccgt aagagatgcc atcgctggga gaccacctgc
     1861 tgataaaaaa tctcaatagc atcttaatgg gaagatccag caagagccca gtcagcgtct
     1921 ggatttctgc taatgccatc acgggttcag ttccagggga atggcagatc tgagacaggg
     1981 cactgtagta aatgagctga ccttggctat agtttccact taaaaaaaaa aaaaaaaaaa
     2041 aaaaaaaaaa
//
