LOCUS       NM_001100671            2870 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus atlastin GTPase 2 (Atl2), mRNA.
ACCESSION   NM_001100671 XM_001063138 XM_216629
VERSION     NM_001100671.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2870)
  AUTHORS   Wang,S., Tukachinsky,H., Romano,F.B. and Rapoport,T.A.
  TITLE     Cooperation of the ER-shaping proteins atlastin, lunapark, and
            reticulons to generate a tubular membrane network
  JOURNAL   Elife 5, e18605 (2016)
   PUBMED   27619977
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2870)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   3  (bases 1 to 2870)
  AUTHORS   Hu,J., Shibata,Y., Zhu,P.P., Voss,C., Rismanchi,N., Prinz,W.A.,
            Rapoport,T.A. and Blackstone,C.
  TITLE     A class of dynamin-like GTPases involved in the generation of the
            tubular ER network
  JOURNAL   Cell 138 (3), 549-561 (2009)
   PUBMED   19665976
REFERENCE   4  (bases 1 to 2870)
  AUTHORS   Rismanchi,N., Soderblom,C., Stadler,J., Zhu,P.P. and Blackstone,C.
  TITLE     Atlastin GTPases are required for Golgi apparatus and ER
            morphogenesis
  JOURNAL   Hum Mol Genet 17 (11), 1591-1604 (2008)
   PUBMED   18270207
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB580536.1, CO395790.1, EV762626.1 and BC092650.1.
            
            On or before Nov 21, 2008 this sequence version replaced
            XM_001063138.1, XM_216629.4.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-603               CB580536.1         1-603
            604-1216            CO395790.1         93-705
            1217-1676           EV762626.1         166-625
            1677-2870           BC092650.1         361-1554
FEATURES             Location/Qualifiers
     source          1..2870
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q12"
     gene            1..2870
                     /gene="Atl2"
                     /gene_synonym="Arl6ip2"
                     /note="atlastin GTPase 2"
                     /db_xref="GeneID:298757"
                     /db_xref="RGD:1305125"
     CDS             1..1752
                     /gene="Atl2"
                     /gene_synonym="Arl6ip2"
                     /note="ADP-ribosylation factor-like 6 interacting protein
                     2"
                     /codon_start=1
                     /product="atlastin-2"
                     /protein_id="NP_001094141.1"
                     /db_xref="GeneID:298757"
                     /db_xref="RGD:1305125"
                     /translation="MAEGDEAARRQQPQQGLRRRRQTSDSSVGVNHVSSTTSLGEDYE
                     DADLVNSDEVMRKPCPVQIVLAHEDDHNFELDEEALERILLQEHIRDLNIVVVSVAGA
                     FRKGKSFLLDFMLRYMYNKDSQSWIGGSNEPLTGFTWRGGCERETTGIQVWNEVFVID
                     RPNGTKVAVLLMDTQGAFDSQSTIKDCATVFALSTMTSSVQVYNLSQNIQEDDLQHLQ
                     LFTEYGRLAMEEIYQKPFQTLMFLIRDWSYPYEHSYGLEGGKQFLEKRLQVKQNQHEE
                     LQNVRKHIHNCFSNLGCFLLPHPGLKVATNPSFDGRLKDIDEDFKRELRNLVPLLLAP
                     ENLVEKEISGSKVTCRDLVEYFKAYIKIYQGEELPHPKSMLQATAEANNLAAVAGARD
                     AYCRSMEQVCGGDKPYIAPSDLERKHLDLKEVALKQFRSVKKMGGDEFCRRYQDQLEA
                     EIEETYANFIKHNDGKNIFYAARTPATLFAVMFAMYIISGLTGFIGLNSIAVLCNLVM
                     GLALTSLCTWAYVKYSGEFREIGTMIDQVAETLWEQVLKPLGDNLMEENIRQSVTNSI
                     KAGLTDQVSHHARLKTD"
     exon            1..118
                     /gene="Atl2"
                     /gene_synonym="Arl6ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            119..363
                     /gene="Atl2"
                     /gene_synonym="Arl6ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            364..498
                     /gene="Atl2"
                     /gene_synonym="Arl6ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            499..603
                     /gene="Atl2"
                     /gene_synonym="Arl6ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            604..654
                     /gene="Atl2"
                     /gene_synonym="Arl6ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            655..711
                     /gene="Atl2"
                     /gene_synonym="Arl6ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            712..804
                     /gene="Atl2"
                     /gene_synonym="Arl6ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            805..943
                     /gene="Atl2"
                     /gene_synonym="Arl6ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            944..1071
                     /gene="Atl2"
                     /gene_synonym="Arl6ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            1072..1128
                     /gene="Atl2"
                     /gene_synonym="Arl6ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            1129..1200
                     /gene="Atl2"
                     /gene_synonym="Arl6ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            1201..1632
                     /gene="Atl2"
                     /gene_synonym="Arl6ip2"
                     /inference="alignment:Splign:2.1.0"
     exon            1633..2837
                     /gene="Atl2"
                     /gene_synonym="Arl6ip2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggcggagg gggacgaggc agcgcgaagg cagcagccgc agcaggggct gaggcgccgg
       61 cgacagacta gcgactcgag cgtcggggtt aaccacgtct cgtccacgac ctccttaggt
      121 gaggattatg aagatgctga cctagtgaac tcagatgagg tcatgaggaa accgtgccca
      181 gtacagattg tccttgccca tgaagacgac cataactttg agcttgacga agaggctttg
      241 gagcggatac tgctgcagga gcacatccgg gaccttaaca tagtcgtggt atctgtggca
      301 ggagcttttc gtaaagggaa atcatttctc ctggacttca tgcttagata tatgtataac
      361 aaggattcgc aaagctggat tggtggaagc aatgagccgt tgactggctt tacatggcga
      421 ggtggttgtg aaagagaaac aacaggcata caagtttgga atgaagtgtt tgtgatcgac
      481 agacctaatg gaacaaaagt ggctgtgctg ctaatggata cccagggtgc ctttgatagc
      541 cagtcaacca ttaaagactg tgcgacggtg tttgctctga gcaccatgac cagctctgtc
      601 caggtatata atttgtctca gaatattcaa gaagatgatc ttcaacactt acaattattt
      661 acagagtatg ggagacttgc aatggaagag atctaccaga agccatttca gacgttaatg
      721 tttttgattc gagattggag ttatccttat gagcattcat atggcttgga aggtggaaag
      781 cagttcctgg aaaagagatt gcaggtaaaa caaaaccagc acgaagagct acagaatgtc
      841 aggaagcata ttcacaattg cttctcaaat ctgggctgct tccttctacc acatcctggt
      901 cttaaagttg ccacgaaccc tagttttgat ggacgactga aagatattga tgaagacttt
      961 aaacgggagc ttcggaatct ggttccattg ctgcttgctc ctgagaatct cgttgagaaa
     1021 gagataagtg gatctaaagt cacttgtaga gatcttgtag agtattttaa ggcatacatt
     1081 aaaatatatc aaggagagga actaccacat ccaaaatcta tgcttcaggc aacagctgag
     1141 gctaataacc tggcagcagt agcgggagca agggatgcct actgtagaag tatggagcag
     1201 gtatgtggtg gcgacaagcc gtacattgca ccttcagatt tggagcgaaa acacctggat
     1261 ctcaaggaag tggcgctcaa acagtttcgt tctgtgaaaa aaatgggtgg tgatgaattc
     1321 tgccgccgtt atcaggacca gcttgaagct gaaatcgaag aaacctatgc aaatttcata
     1381 aagcacaatg atggcaaaaa catcttctat gctgctcgca cccccgccac actgttcgca
     1441 gtcatgtttg ctatgtacat aatctcagga ctgaccggct tcatcggcct gaactctata
     1501 gctgtcttat gcaaccttgt catggggctg gcactgacct ccctgtgtac gtgggcatat
     1561 gttaagtact ctggggagtt cagagaaatt ggaacaatga ttgatcaggt tgctgaaaca
     1621 ctatgggaac aggtattgaa gcccctgggt gataatttga tggaggaaaa cataaggcag
     1681 tctgtaacaa actctatcaa agcaggcctg actgaccagg tgtctcatca tgcccgatta
     1741 aagacagact gacagctcat ctcctcacgg actcccttgt tcatgcttgc tgtacaatga
     1801 gaactcagat aaataaacca aagtttacaa tcaactgtag aagtagctta gtgtaactgg
     1861 cctcacagat ggctgccaca gagtgtgaac attgtttgtt ggttttcagc cttcttttga
     1921 tgtctcctca gaccggcgat tggctgagga gcgttagttt atcatgcaca tttgtgccat
     1981 gtttaattct tttctttctt tttactgaat ttaatgttag tgaaatttgt cttatgtaaa
     2041 aggatatttc agggaaatat tttaagaaat ctatttagag tctctttaat atagtgtccc
     2101 attgaaattt taatttttag agaatttatg aatcactgta tcaagaatca gatcggaatg
     2161 acaatgaagc ctttattgag ccactacatt aaaagtgtat attgctttac tgccttcaat
     2221 gccagtatta cataaatgca tgtatcagaa acttcacaga aatcacatga caactcgtag
     2281 ctgagaaggt aattctgagg tgtacattgt cttgcctttt taaatttgta aacctgccct
     2341 gaacggagat gcattatctg ggaaactgag ctgtctttgc agtttagcct ttcatgtaca
     2401 taaaatacgc cattaatttt attgggggag aaattccatc caaaaatgtt gcctacagct
     2461 gtgagttaag agtgtctgta cagtgtgtag cttttatttt ctaaaaatta caggtagggc
     2521 atgtatatga attataaata tataaataca attttgtatt aaaagttttg tagtttatgg
     2581 caaaatctgg ttctgtggta ggctaataag tacagtcctg tgaaaggaat gtctgtggct
     2641 catgtcagtg tgtgaatgca tagacagttt gaagttttga tatatttgtg atatttatct
     2701 tccttgagca ctgcaatctc acccccaaga gaattcaatg ggaatgtttt attgtgactt
     2761 gtcctctgtt gcattttaaa gttatttcct gtaatttatt ttcagtacat aattaaaaat
     2821 ttgttgtata tataaaaaaa aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
//
