LOCUS       NM_001191968            2775 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus autophagy related 9B (Atg9b), mRNA.
ACCESSION   NM_001191968 XM_575327
VERSION     NM_001191968.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2775)
  AUTHORS   Yang,Z. and Klionsky,D.J.
  TITLE     Mammalian autophagy: core molecular machinery and signaling
            regulation
  JOURNAL   Curr Opin Cell Biol 22 (2), 124-131 (2010)
   PUBMED   20034776
  REMARK    Review article
REFERENCE   2  (bases 1 to 2775)
  AUTHORS   Wohlgemuth,S.E., Julian,D., Akin,D.E., Fried,J., Toscano,K.,
            Leeuwenburgh,C. and Dunn,W.A. Jr.
  TITLE     Autophagy in the heart and liver during normal aging and calorie
            restriction
  JOURNAL   Rejuvenation Res 10 (3), 281-292 (2007)
   PUBMED   17665967
REFERENCE   3  (bases 1 to 2775)
  AUTHORS   Yamada,T., Carson,A.R., Caniggia,I., Umebayashi,K., Yoshimori,T.,
            Nakabayashi,K. and Scherer,S.W.
  TITLE     Endothelial nitric-oxide synthase antisense (NOS3AS) gene encodes
            an autophagy-related protein (APG9-like2) highly expressed in
            trophoblast
  JOURNAL   J Biol Chem 280 (18), 18283-18290 (2005)
   PUBMED   15755735
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Jul 17, 2010 this sequence version replaced XM_575327.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760389
                              [ECO:0006172]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-553               JAXUCZ010000004.1  11678548-11679100
            554-597             JAXUCZ010000004.1  11679222-11679265
            598-662             JAXUCZ010000004.1  11679393-11679457
            663-824             JAXUCZ010000004.1  11679815-11679976
            825-966             JAXUCZ010000004.1  11680570-11680711
            967-1721            JAXUCZ010000004.1  11681906-11682660
            1722-1878           JAXUCZ010000004.1  11682799-11682955
            1879-2058           JAXUCZ010000004.1  11683270-11683449
            2059-2295           JAXUCZ010000004.1  11683847-11684083
            2296-2429           JAXUCZ010000004.1  11684252-11684385
            2430-2526           JAXUCZ010000004.1  11684546-11684642
            2527-2650           JAXUCZ010000004.1  11684878-11685001
            2651-2775           JAXUCZ010000004.1  11685085-11685209
FEATURES             Location/Qualifiers
     source          1..2775
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q11"
     gene            1..2775
                     /gene="Atg9b"
                     /gene_synonym="RGD1560887"
                     /note="autophagy related 9B"
                     /db_xref="GeneID:499973"
                     /db_xref="RGD:1560887"
     CDS             1..2775
                     /gene="Atg9b"
                     /gene_synonym="RGD1560887"
                     /note="ATG9 autophagy related 9 homolog B"
                     /codon_start=1
                     /product="autophagy-related protein 9B"
                     /protein_id="NP_001178897.1"
                     /db_xref="GeneID:499973"
                     /db_xref="RGD:1560887"
                     /translation="MVRRMGWGGSRRQRGRWGDLGPSSVPLLPMALPLPASPCRGLGG
                     GRISVFSLSPAPRTRSCSSSLFPPTSGSPSLVIQEAGASQPPFNALPTPATPPTQALP
                     TMTHTSASPSWGSHSTPPLASVTPPPSCRCPQDHPGLRIGPLIPEQDYERLEDCDPEG
                     SQDSSSPVHGEDHQPLLHVPEGLRGSWHHIQNLDSFFTKIYSYHQRNGFACILLEDVF
                     QLGQFIFIVTFTTFLLRCVDYNVLFNNQPKNHTRPGPLHSKVTLSDAILPSAQCAEKI
                     HGSPLLVFLLVLAAGFWLFQLLRSVCNLFSYWDIQVFYREALHIPPEELSSVPWAEVQ
                     SRLLELQRSGGLCVQPRPLTELDVHHRILRYTNYQVALANKGLLPARCPLPWGGSAAF
                     LSRGLALNVDLLLFRGPFSLFRGGWELPEAYKRSDLRGVLATRWRRTVLLLAAVNLAL
                     SPLVLAWQVLHAFYSHVELLRREPGAFGARRWSRLARLQLRHFNELPHELRARLGRAY
                     RPATAFLRAAEPPAPLRALLARQLVFFSGALFAALLVLTIYDEDVLAVEHVLTTMTAL
                     GVTATVARSFIPEEQCQGRSSQLLLQAALAHMHYLPEEPGAAGARTSSYWQMSQLLQY
                     RAVSLLEELLSPLLTPLFLLFWFRPRALQIIDFFHHFTVDVAGVGDICSFALMDVKRH
                     GHPQWLSEGQTEASLSQRAEDGKTELSLMRFSLAHPQWQPPGHSSKFLGHLRGRVQQD
                     AAAWGAPSTRSPPTPGVLSDCTSPLPEAFLANLLVSPRPPQRDLSPTAPCPAAATASL
                     LASISRMAQDPSCVSPGGTGGQKLTQLPELVSAEMSLHAIYLHQLHQQQQQEVWGEAS
                     ASSPSRPWSSPSQPGSPDEEKPSWSSDGSSPASSPRQQWGTQRAQNLFPKDFQETTDA
                     QKEPLPGSLH"
     exon            1..553
                     /gene="Atg9b"
                     /gene_synonym="RGD1560887"
                     /inference="alignment:Splign:2.1.0"
     exon            554..597
                     /gene="Atg9b"
                     /gene_synonym="RGD1560887"
                     /inference="alignment:Splign:2.1.0"
     exon            598..662
                     /gene="Atg9b"
                     /gene_synonym="RGD1560887"
                     /inference="alignment:Splign:2.1.0"
     exon            663..824
                     /gene="Atg9b"
                     /gene_synonym="RGD1560887"
                     /inference="alignment:Splign:2.1.0"
     exon            825..966
                     /gene="Atg9b"
                     /gene_synonym="RGD1560887"
                     /inference="alignment:Splign:2.1.0"
     exon            967..1721
                     /gene="Atg9b"
                     /gene_synonym="RGD1560887"
                     /inference="alignment:Splign:2.1.0"
     exon            1722..1878
                     /gene="Atg9b"
                     /gene_synonym="RGD1560887"
                     /inference="alignment:Splign:2.1.0"
     exon            1879..2058
                     /gene="Atg9b"
                     /gene_synonym="RGD1560887"
                     /inference="alignment:Splign:2.1.0"
     exon            2059..2295
                     /gene="Atg9b"
                     /gene_synonym="RGD1560887"
                     /inference="alignment:Splign:2.1.0"
     exon            2296..2429
                     /gene="Atg9b"
                     /gene_synonym="RGD1560887"
                     /inference="alignment:Splign:2.1.0"
     exon            2430..2526
                     /gene="Atg9b"
                     /gene_synonym="RGD1560887"
                     /inference="alignment:Splign:2.1.0"
     exon            2527..2650
                     /gene="Atg9b"
                     /gene_synonym="RGD1560887"
                     /inference="alignment:Splign:2.1.0"
     exon            2651..2775
                     /gene="Atg9b"
                     /gene_synonym="RGD1560887"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggtgagac gaatggggtg gggggggagc aggaggcagc gggggcggtg gggagacttg
       61 gggcccagct cagtgcctct gctccctatg gcactgccac tgcctgcttc tccgtgtcgg
      121 ggacttgggg gagggaggat ctctgtcttc tctctgtccc ctgcccctcg tacaagaagc
      181 tgctcctctt cattgttccc tcccacctca gggtccccct ccctggtgat tcaggaggca
      241 ggggcttctc agcctccatt caatgcctta cccaccccag ccacaccccc aacacaggcc
      301 cttcccacaa tgacacacac ctctgcttcc ccctcatggg ggtcccactc caccccaccc
      361 ctggcctcgg tcactccccc tccctcctgc cggtgccccc aggaccatcc tgggctgcgg
      421 ataggccctc tgatccctga gcaggattat gaaaggctag aggactgtga ccctgagggg
      481 tctcaagatt cgtcctcgcc cgtccatggg gaggaccacc aacctttgct ccatgtacct
      541 gaagggctcc gtggctcctg gcatcacatc cagaacctgg acagtttctt caccaagatc
      601 tacagctatc accagcggaa cggttttgcc tgtatcctgc tggaggatgt cttccagctg
      661 ggacagttca ttttcattgt cacctttaca accttcctcc ttcgctgcgt ggattacaat
      721 gttctcttca acaaccaacc gaagaaccat acaaggcctg ggccattgca cagcaaagtg
      781 accttgtcag atgccattct accctcagcc cagtgtgcag agaagatcca tggcagtcct
      841 ctgttggtct tcctcctagt cttggctgct ggcttctggc tgtttcagct gctgcgctcg
      901 gtctgcaatc tcttcagcta ctgggacatc caggtgtttt acagggaggc cctgcatatc
      961 cccccagagg agctcagctc ggtaccgtgg gccgaggtgc agtctcgcct cctggagctg
     1021 cagaggagcg gtgggctgtg tgtgcagccg cgaccgctga ccgaactgga tgtccatcac
     1081 cgcatcctgc gctacaccaa ctaccaggtg gcgctggcca acaagggtct gctgcctgcc
     1141 cgttgcccgc tgccctgggg gggcagtgct gccttcctta gtcgcggcct ggcgctcaac
     1201 gtggacttgc tgctcttccg aggtcccttc tctcttttcc gcgggggctg ggagcttccc
     1261 gaagcctaca agcgcagcga cctccggggc gtcctggcca cccgttggcg gcgcacggtg
     1321 ctgctgctgg ccgccgtgaa cttggcgctg agcccgctgg tgctggcttg gcaggtactg
     1381 cacgccttct acagccacgt ggagctgctg cggcgcgagc ccggagcctt cggagcgcgt
     1441 cgctggtccc gcctggcccg cctgcagttg cgccacttta acgagctgcc gcacgagctg
     1501 cgtgcgcgcc tgggccgcgc ctaccggccc gccaccgcct tcctccgtgc agccgagccc
     1561 cccgcgcccc tccgtgcgct gctggcccgc cagctggtct tcttctccgg tgcgctcttt
     1621 gccgcgctgc tagtcctcac catctatgat gaggacgtgt tggccgtgga gcatgtgctc
     1681 actaccatga cggcgctcgg ggtcacagcc actgtggcca ggtccttcat tccagaggag
     1741 caatgtcagg ggcgttcctc ccagcttctg ctgcaggcgg ccctggcaca catgcattac
     1801 ctcccagagg agcctggtgc agcaggtgct cggaccagct cttactggca gatgtcacag
     1861 ctgcttcagt accgagcagt ctccctcctg gaagagctcc tgtctccgct cctgaccccg
     1921 ctgttcctgc tcttctggtt ccgcccccgt gctctgcaga tcattgattt tttccatcac
     1981 ttcactgtgg atgtggctgg tgttggggac atctgttctt ttgccttgat ggatgtgaag
     2041 cgtcatggtc accctcagtg gctttcagag ggacagacag aggcctcact ctctcagcgt
     2101 gcagaggatg gaaagaccga actctccttg atgcggtttt ccctggcaca cccacaatgg
     2161 cagccaccag ggcacagctc taagttcctt ggacaccttc ggggccgggt acaacaagat
     2221 gcagctgcct ggggtgctcc ctcgacacgc agccccccca ctccaggggt gctcagtgac
     2281 tgtacctccc ctctgccaga agccttcctg gccaacctct tggtgagtcc ccgcccaccc
     2341 cagagggacc tgagccccac ggctccctgc cccgccgcag ccacagccag cctccttgct
     2401 tctatttcac gaatggccca ggaccccagc tgtgtgtctc caggaggcac agggggccag
     2461 aagctgaccc agctcccaga gcttgtttct gctgagatga gcctccacgc catttaccta
     2521 catcagcttc atcaacagca gcagcaggaa gtatggggag aggcttcagc ttcctcccca
     2581 tccaggccct ggtccagccc ttcacagcca ggctcaccag atgaggagaa gccgtcttgg
     2641 tcaagtgatg gttccagtcc tgcttccagc ccaagacagc agtggggcac ccagagggcc
     2701 cagaatctgt tcccaaagga tttccaggag accacagacg cccagaagga gcccctacca
     2761 ggctccttgc actga
//
