LOCUS       XM_039083882            3851 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus autophagy related 9A (Atg9a),
            transcript variant X3, mRNA.
ACCESSION   XM_039083882
VERSION     XM_039083882.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3851
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3851
                     /gene="Atg9a"
                     /gene_synonym="RGD1310450"
                     /note="autophagy related 9A; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 35
                     ESTs, 1 long SRA read, 11 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 111 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:363254"
                     /db_xref="RGD:1310450"
     CDS             232..2772
                     /gene="Atg9a"
                     /gene_synonym="RGD1310450"
                     /codon_start=1
                     /product="autophagy-related protein 9A isoform X1"
                     /protein_id="XP_038939810.1"
                     /db_xref="GeneID:363254"
                     /db_xref="RGD:1310450"
                     /translation="MAQFDTEYQRLEASYSDSPPGEEDLLVHVAEGSKSPWHHIENLD
                     LFFSRVYNLHQKNGFTCMLIGEIFELMQFLFVVAFTTFLVSCVDYDILFANKMVNHSL
                     HPTEPVKVTLPDAFLPAQVCSARIQENGSLITILVIAGVFWIHRLIKFIYNICCYWEI
                     HSFYLHALRIPMSALPYCTWQEVQARIVQTQKEHQICIHKRELTELDIYHRILRFQNY
                     MVALVNKSLLPLRFRLPGLGEVVFFTRGLKYNFELILFWGPGSLFLNEWSLKAEYKRG
                     GQRLELAQRLSNRILWIGIANFLLCPLILIWQILYAFFSYAEVLKREPGALGARCWSL
                     YGRCYLRHFNELEHELQSRLNRGYKPASKYMNCFLSPLLTLLAKNGAFFAGSILAVLI
                     ALTIYDEDVLAVEHVLTTVTLLGVTVTVCRSFIPDQHMVFCPEQLLRVILAHIHYMPD
                     HWQGNAHRSQTRDEFAQLFQYKAVFILEELLSPIVTPLILIFCLRPRALEIIDFFRNF
                     TVEVVGVGDTCSFAQMDVRQHGHPQWLSGGQTEASVYQQAEDGKTELSLMHFAITNPG
                     WQPPRESTAFLGFLKEQVQRDGAAAGLAQGGLLPENALFTSIQSLQSESEPLSLIANV
                     VAGSSCRGPPLSRDLQGSRHRADVASALRSFSPLQPGQAPQGRVPSTMTGSGVDARTA
                     SSGSSVWEGQLQSLVLSEYASTEMSLHALYMHQLHKQQTQAEPERHVWHRRESDESGE
                     SAPEEGGEGARAPQPIPRSASYPCATPRPGAPETTALHGGFQRRYGGITDPGTVPRAP
                     SHFSRLPLGGWAEDGQPASRHPEPVPEEGSEDELPPQVHKTPMGQEAS"
ORIGIN      
        1 agctcctggt ctagctgagc ccagcagaac agaccgggct tctggaatcg cccgggtcgc
       61 ggttcctgcg gtgacacgcg aggctggtaa ctggaatctc cagacccagg cccaagctgg
      121 ccaggggtgc ccacagagcc ccaacagctg tccaaccagg gcacccagga ctgacgtgga
      181 gcagaaactg tccatggagc tggttaacaa ggtggacagg gggctgccgt gatggcacag
      241 tttgacactg aataccagcg cctagaggcc tcttatagcg attcaccccc aggggaagag
      301 gacctgttgg tgcatgtggc tgaggggagc aaatcacctt ggcaccacat tgaaaacctt
      361 gacctcttct tctctcgagt ttataatcta catcagaaga atgggttcac atgtatgctc
      421 attggagaga tttttgaact catgcagttc ctctttgtgg ttgccttcac caccttcctg
      481 gttagctgtg tggactatga catcctattt gccaacaaga tggtgaacca cagtctgcat
      541 cctaccgagc ctgtcaaggt cactctgcca gatgcctttt tgcctgccca agtttgcagt
      601 gccaggattc aggaaaacgg ctccctcatc accatcctgg tcatcgctgg tgtcttctgg
      661 atccaccggc ttatcaagtt tatctataac atttgctgct attgggagat ccactccttc
      721 tacctacatg ctctgcggat cccaatgtct gcccttccgt attgcacgtg gcaggaagtg
      781 caggcccgga ttgtgcagac ccagaaagag catcagatct gcatccacaa gcgtgagctg
      841 acagagttgg acatctacca tcgcatcctc cgtttccaga actacatggt ggcactggtg
      901 aacaaatccc tcttgcctct gcgcttccgt ctgcccggcc tcggagaggt tgtcttcttc
      961 acccgtggcc tcaagtacaa ctttgagctc atcctcttct ggggacccgg ctctctgttt
     1021 ctcaatgaat ggagcctcaa ggccgagtac aaacgtggag ggcaacggct agagctggcc
     1081 cagcgtctca gcaaccgcat cctgtggatt ggcatcgcca acttcctgct ctgtcccctc
     1141 atcctcatct ggcagatcct ctatgccttc ttcagctatg ccgaggtgct gaagagagag
     1201 ccgggagccc tgggagcgcg ttgctggtca ctctatggcc gttgctacct ccgccacttc
     1261 aatgagctag aacacgagct gcagtcccgc ctcaaccgag gatacaagcc cgcctccaag
     1321 tacatgaatt gcttcttgtc accgctactg actctgctgg ccaagaatgg tgccttcttc
     1381 gcgggctcta tcctggccgt gcttattgct ctcacgatct acgatgaaga tgtgttggct
     1441 gtggagcatg tcctcaccac tgtcacccta ctgggagtca cggtgactgt gtgcaggtct
     1501 ttcatcccag accagcacat ggtgttctgc cctgagcagc tgctccgagt gatccttgcc
     1561 cacatccact acatgcctga ccactggcag ggtaatgccc accgctcgca gacccgggac
     1621 gagtttgccc agctcttcca gtacaaggca gtgttcatct tggaggagtt gctgagtccc
     1681 attgttacac ccctcattct catcttctgc ctacgcccac gggccctgga gatcatagac
     1741 ttcttccgaa actttactgt ggaggtcgtc ggtgtggggg acacctgctc ctttgcgcag
     1801 atggacgttc gccagcacgg tcatcctcag tggctgtctg gagggcagac tgaggcctca
     1861 gtgtaccagc aagccgagga tgggaagacc gagttgtcac tcatgcactt tgccatcacc
     1921 aatcctggct ggcagccccc tcgtgagagc acagccttcc tgggcttcct caaggagcag
     1981 gtgcagcgag atggagcggc tgctggcctt gcccagggtg gtctgctccc agagaatgcc
     2041 cttttcacat ccatccagtc cttacagtct gagtctgagc cactgagcct cattgcaaat
     2101 gtggtagcag gctcgtcctg ccgaggaccc ccactgtcca gagacctgca gggttccagg
     2161 cacagggctg atgttgcttc tgcccttaga tccttctccc ctctacagcc tggacaggcc
     2221 cctcaaggcc gtgttcccag taccatgaca ggctctggag tggacgccag gacagccagc
     2281 tccgggagca gcgtgtggga aggacagctg caaagcctgg tgctgtctga atatgcgtcc
     2341 actgagatga gccttcatgc cctctatatg caccagctcc acaagcagca gacccaggct
     2401 gagcccgagc ggcatgtgtg gcaccgccgg gagagtgatg agagtggaga gagtgcccct
     2461 gaagaggggg gagagggtgc ccgggccccc caacccatcc cacgctctgc cagctatccc
     2521 tgtgctactc cccggcctgg agcacctgag accaccgccc tgcatggggg cttccagagg
     2581 cgctacgggg gcatcacaga tcctggcaca gtgccccgtg ctccctctca cttctccagg
     2641 ctgcccttgg gaggatgggc agaagatggg cagccagcat caagacaccc agagccggtg
     2701 ccagaggagg gctcagagga tgaactgccc cctcaagtgc acaagactcc tatggggcaa
     2761 gaagctagct gaagactgtc tgcactaccg gtcttttctt tcctgcacag gtatagacaa
     2821 ggcagaagct ggttcccctg ctccgggatg gaggcaacag ctgtcctgcc atctcttctg
     2881 cctgccatga gagggattct ctgagtgccg tctggcccca cgtgtgtggt gttttgtgtg
     2941 ttcctgcctg gccaagggag gtgccaacgt tgggcttgcc atagcccaag aatttgaggc
     3001 ctagggacta ggggcataca cgagtctagc ctcgacccca ggactccctt ggctcagagt
     3061 ggtgctagaa actggtcccc agcccagtcc cagtactgcc atctttgcat ccaccccaca
     3121 gaagctgcca agcagaagaa cctgtgccaa ctgtggagtg ggaaggcagg gcctgaaccc
     3181 tcaatccctg caacctagcc ccccatctgg aatagctgag cagctcaggc tgcagccctt
     3241 acctccagtc ctcacccagt gctgcagcca tctggccacc ccgacccccg cacatcactg
     3301 gcatgtgtgc gctgcctgct cccctcagtt cacttgcccc ccttctgttt ggcttttgct
     3361 ttttgttggg gtgagagccc tagctcccag ctcccctcac actacctttt gacactaaga
     3421 cggaaggttt ctaagttgca ggaacaggat gaaaattctt tactaccctc ttcaactttt
     3481 aggatgggca cttgggagtg tgaggccttc ctagctgctt ataatatact cctatcaccc
     3541 acacagggac tgacagggca ggaatgtgac ctcagttata tatacatata tatcccagca
     3601 agacagctct gccctgtatc cctcaccaaa aggaggatgg agggataatg gactcaccct
     3661 agcctagggc ttcgacattg catgctggga ttcagctcct acccttcccc cacactcccc
     3721 cagttctgct cggctgtgga aggtaaactt atgccgaagg tggcggactc tgctgtcgca
     3781 gcccacagca gacagggtgg gaaccctgta cagcttgata acccttaata aagaagggaa
     3841 tttgaacggg c
//
