LOCUS       NM_001107948            2331 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus autophagy related 4C, cysteine peptidase (Atg4c),
            mRNA.
ACCESSION   NM_001107948 XM_001056029 XM_233220
VERSION     NM_001107948.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2331)
  AUTHORS   Li M, Hou Y, Wang J, Chen X, Shao ZM and Yin XM.
  TITLE     Kinetics comparisons of mammalian Atg4 homologues indicate
            selective preferences toward diverse Atg8 substrates
  JOURNAL   J Biol Chem 286 (9), 7327-7338 (2011)
   PUBMED   21177865
REFERENCE   2  (bases 1 to 2331)
  AUTHORS   Tanida I, Ueno T and Kominami E.
  TITLE     LC3 conjugation system in mammalian autophagy
  JOURNAL   Int J Biochem Cell Biol 36 (12), 2503-2518 (2004)
   PUBMED   15325588
  REMARK    Review article
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473998.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_233220.4, XM_001056029.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132263,
                              SAMD00132267 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2331
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q33"
     gene            1..2331
                     /gene="Atg4c"
                     /note="autophagy related 4C, cysteine peptidase"
                     /db_xref="GeneID:313391"
                     /db_xref="RGD:1598323"
     exon            1..378
                     /gene="Atg4c"
                     /inference="alignment:Splign:2.1.0"
     exon            379..513
                     /gene="Atg4c"
                     /inference="alignment:Splign:2.1.0"
     CDS             438..1814
                     /gene="Atg4c"
                     /note="autophagy-related 4C; ATG4 autophagy related 4
                     homolog C"
                     /codon_start=1
                     /product="cysteine protease ATG4C"
                     /protein_id="NP_001101418.1"
                     /db_xref="GeneID:313391"
                     /db_xref="RGD:1598323"
                     /translation="MEASGTDEVDKLKTKFISAWNNMKYSWVLKTKTYFSRNSPVLLL
                     GKCYHFKYEDESKVLPARSGCAIEDHVIAGNVEEFRKDFISRIWLTYREEFPQIEASA
                     LTTDCGWGCTLRTGQMLLAQGLILHFLGRAWTWPDALHIESSDSDSWTSNTIHKFTAS
                     FEASLSGERELRTPAVSLKETSGKHPDDHAVQSEIYHRQIISWFGDSPVAVFGLHRLI
                     EFGKKSGKKAGDWYGPAVVAHILRKAVEEARHPDLQGLTIYVAQDCTVYNSDVIDKQT
                     DSVTAGDARDKAVIILVPVRLGGERTNIDYLEFVKGVLSLEYCVGIIGGKPKQSYYFA
                     GFQDDSLIYMDPHYCQSFVDVSIKDFPLETFHCPSPKKMSFRKMDPSCTIGFYCRNVQ
                     DFERASEEITKMLKISSKEKYPLFTFVNGHSRDFDFTSTAASEEDLFLEDEKKNFKRF
                     STEEFVLL"
     exon            514..597
                     /gene="Atg4c"
                     /inference="alignment:Splign:2.1.0"
     exon            598..831
                     /gene="Atg4c"
                     /inference="alignment:Splign:2.1.0"
     exon            832..1162
                     /gene="Atg4c"
                     /inference="alignment:Splign:2.1.0"
     exon            1163..1233
                     /gene="Atg4c"
                     /inference="alignment:Splign:2.1.0"
     exon            1234..1370
                     /gene="Atg4c"
                     /inference="alignment:Splign:2.1.0"
     exon            1371..1449
                     /gene="Atg4c"
                     /inference="alignment:Splign:2.1.0"
     exon            1450..1526
                     /gene="Atg4c"
                     /inference="alignment:Splign:2.1.0"
     exon            1527..1646
                     /gene="Atg4c"
                     /inference="alignment:Splign:2.1.0"
     exon            1647..2331
                     /gene="Atg4c"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtagtccgag accgcaggag ctcacggtgc gtggcggctg gtagctgaag tgcagtagtt
       61 acagctacga gggacagctg taatcctaac acaggcctac cgctcacaaa tacacggcgc
      121 taggctctga gcttgcagcc tgggagctta gggtctcgga cagggctatc ttcaggaccg
      181 cggcctacgg aggcttcgga gtcctgtgct acggtggccg cgcagggccg cgtgccgcac
      241 gtcccgcggt gcgtacgcgc tgttccgagc ggctgctgga gcctgagcgt gtgctggtgt
      301 gcggactcct gcgcagcagt acagttattc agtcctgtgt cgccgagggg atcgcttgag
      361 gctggcggag tggagaagta cattggattt tctaaaagaa tggaatcaag tgatggcttt
      421 ttctttagaa tttgaatatg gaggcgtcag gaacagatga agttgacaag ctaaaaacta
      481 aatttatatc tgcttggaac aacatgaaat atagttgggt gttgaaaaca aagacatatt
      541 ttagtagaaa ctcacctgtt ttattgcttg gaaaatgtta tcattttaaa tatgaagatg
      601 aaagcaaggt gttgcccgca agatcaggat gtgccattga agatcatgta attgcaggca
      661 atgtggaaga gttccgtaag gatttcattt ctagaatatg gctgacctac agggaagaat
      721 ttcctcaaat agaagcttca gccttgacga cagactgtgg ctggggctgt acactgcgga
      781 ccggccagat gctgctggct cagggactca tactacattt tctcggtaga gcctggacct
      841 ggcccgacgc actgcacatt gagagttcgg actccgactc atggacctcc aacaccatcc
      901 acaagttcac tgcgtccttt gaagcctccc tttcagggga gagagaactc cggaccccag
      961 cagtctctct gaaggaaacg tccgggaagc atcccgacga ccatgcagta cagagtgaga
     1021 tttaccacag gcagatcatc tcttggtttg gagactcccc tgtggctgtc tttggcttac
     1081 atcgcctgat agagttcggg aagaagtctg ggaagaaagc tggtgactgg tatggaccag
     1141 cagtggttgc tcacatttta agaaaagcag ttgaagaagc aaggcatccg gatttgcaag
     1201 ggctaacaat ttatgttgcc caggactgta cagtttacaa ttctgatgta attgataagc
     1261 agactgattc tgtgacggct ggagatgctc gtgacaaggc tgttattatt ttagttcctg
     1321 ttaggcttgg tggagaaaga accaacattg actatctgga gtttgtgaag ggtgttttaa
     1381 gccttgagta ttgtgttggt atcattggcg gcaaaccgaa acagtcatac tactttgctg
     1441 gatttcaaga tgacagtttg atttacatgg atcctcatta ctgccagtct tttgtagatg
     1501 tcagcataaa ggatttccct ctcgagacat tccactgtcc atctcctaag aagatgtcat
     1561 ttcgaaaaat ggatcctagt tgcacgatag gattttactg tcgaaatgtc caggactttg
     1621 aacgagcatc tgaagaaatc actaagatgt tgaaaatttc ctctaaggag aaatatccat
     1681 tatttacttt tgtaaatggc cattccagag actttgattt tacgtccact gcagccagtg
     1741 aggaagacct tttcttagaa gatgaaaaga agaatttcaa aagatttagc acagaagagt
     1801 ttgtcctcct ttaaaggtga agacatttgt gcttctgaga agtgcttgag cacagtggag
     1861 tcgaaaagag caacgagcga gctggagatc ctcactaagc acgtcccttt aacagtgcac
     1921 attcgaacac acctagactt taaaggtatt tttctgaata ccttttctaa acgacttgat
     1981 ggctcttgct ttccagtgat aaataacaag ctattctggt tgcattcctg tttcccaaag
     2041 atgtgctaat ggaacactac ataaactgca agcctttcgg tccccagcat tttctacctg
     2101 agcccattga tcccctgaag gttttatgat atatgtttcc tccaagattc agatcaccaa
     2161 gttactttta aaagcctcac tttgtattga tgacaggaga ctggatcttc agcgctaccc
     2221 aacctcctgc tctcactgta accagaggat gttttgggtt tatgtatctg gataataaaa
     2281 tggacacata aaattatata agcaggattt taaggcagta cttaacaatg t
//
