LOCUS       NM_001191560            2097 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus autophagy related 16-like 2 (Atg16l2), mRNA.
ACCESSION   NM_001191560 XM_002728797
VERSION     NM_001191560.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2097)
  AUTHORS   Pirooz,S.D., He,S., Zhang,T., Zhang,X., Zhao,Z., Oh,S.,
            O'Connell,D., Khalilzadeh,P., Amini-Bavil-Olyaee,S., Farzan,M. and
            Liang,C.
  TITLE     UVRAG is required for virus entry through combinatorial interaction
            with the class C-Vps complex and SNAREs
  JOURNAL   Proc Natl Acad Sci U S A 111 (7), 2716-2721 (2014)
   PUBMED   24550300
REFERENCE   2  (bases 1 to 2097)
  AUTHORS   Yang,Z. and Klionsky,D.J.
  TITLE     Mammalian autophagy: core molecular machinery and signaling
            regulation
  JOURNAL   Curr Opin Cell Biol 22 (2), 124-131 (2010)
   PUBMED   20034776
  REMARK    Review article
REFERENCE   3  (bases 1 to 2097)
  AUTHORS   Tanida,I., Ueno,T. and Kominami,E.
  TITLE     LC3 conjugation system in mammalian autophagy
  JOURNAL   Int J Biochem Cell Biol 36 (12), 2503-2518 (2004)
   PUBMED   15325588
  REMARK    Review article
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000001.1.
            
            On Jul 17, 2010 this sequence version replaced XM_002728797.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643292.3008.1,
                                           SRR26643284.1014.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-127               JAXUCZ010000001.1  165115103-165115229 c
            128-227             JAXUCZ010000001.1  165113307-165113406 c
            228-330             JAXUCZ010000001.1  165112361-165112463 c
            331-404             JAXUCZ010000001.1  165110336-165110409 c
            405-656             JAXUCZ010000001.1  165109981-165110232 c
            657-722             JAXUCZ010000001.1  165109730-165109795 c
            723-836             JAXUCZ010000001.1  165109367-165109480 c
            837-899             JAXUCZ010000001.1  165108220-165108282 c
            900-1008            JAXUCZ010000001.1  165107283-165107391 c
            1009-1114           JAXUCZ010000001.1  165106809-165106914 c
            1115-1185           JAXUCZ010000001.1  165105980-165106050 c
            1186-1257           JAXUCZ010000001.1  165105645-165105716 c
            1258-1378           JAXUCZ010000001.1  165105413-165105533 c
            1379-1484           JAXUCZ010000001.1  165105002-165105107 c
            1485-1634           JAXUCZ010000001.1  165103887-165104036 c
            1635-1682           JAXUCZ010000001.1  165103669-165103716 c
            1683-1784           JAXUCZ010000001.1  165103482-165103583 c
            1785-2097           JAXUCZ010000001.1  165102936-165103248 c
FEATURES             Location/Qualifiers
     source          1..2097
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q32"
     gene            1..2097
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /note="autophagy related 16-like 2"
                     /db_xref="GeneID:308865"
                     /db_xref="RGD:1311400"
     CDS             1..1872
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /note="autophagy-related protein 16-2; ATG16 autophagy
                     related 16-like 2"
                     /codon_start=1
                     /product="protein Atg16l2"
                     /protein_id="NP_001178489.1"
                     /db_xref="GeneID:308865"
                     /db_xref="RGD:1311400"
                     /translation="MAGPSAPCDPCAPVAAWKRHILRQLRHRDRTQKALFLELVPAYN
                     HLLEKAELLAKFSEKLKSEPKDVISTPHQDSREEASGTGPDQVSSPASLKVKWQQEKK
                     GLQLVCGEMAYQVVRKSAALNTLQSQLEERQGRLEALQACVVQLQEARAQQSRQLEER
                     QAENSAQREAYETLREQAAHQEAALRRLQEEARDLLEQLVQRKARAAAERNLRNERRE
                     RANQARVSQELKKAAKRTVSISEIPNTLEDGTKEETVALGPAAKPEFLESDSCEKWKR
                     PYRSASATSLTLSRCVDVVKGLLDFKKRRGHSVGGVSEQRYQSIPVCVSAQIPSQAQD
                     VLDAHLSEVNAVCFAPNSSLLATGGADRLIHLWNVVGGRLEANQTLEGAGGSITSVDF
                     DPSGSQVLAATYNQAAQLWKVGETQSKETLSGHKDKVTAAKFKLTRHQAVTGSRDRTV
                     KEWDLGRAYCSRTINVLSYCNDVVCGDHIIISGHNDQKIRFWDSRGPHCIQVIPVQGR
                     VTSLNLSHDQLHLLSCSRDNTLKVIDLRISNIRQVFRADGFKCSSDWTKAVFSPDRSY
                     ALVGSSNGTLYIWDVNTGKLETSLQGPHCTAVNAVAWCFSGNHVVSVDQVRKVVLWH"
     exon            1..127
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /inference="alignment:Splign:2.1.0"
     exon            128..227
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /inference="alignment:Splign:2.1.0"
     exon            228..330
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /inference="alignment:Splign:2.1.0"
     exon            331..404
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /inference="alignment:Splign:2.1.0"
     exon            405..656
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /inference="alignment:Splign:2.1.0"
     exon            657..722
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /inference="alignment:Splign:2.1.0"
     exon            723..836
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /inference="alignment:Splign:2.1.0"
     exon            837..899
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /inference="alignment:Splign:2.1.0"
     exon            900..1008
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /inference="alignment:Splign:2.1.0"
     exon            1009..1114
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /inference="alignment:Splign:2.1.0"
     exon            1115..1185
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /inference="alignment:Splign:2.1.0"
     exon            1186..1257
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /inference="alignment:Splign:2.1.0"
     exon            1258..1378
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /inference="alignment:Splign:2.1.0"
     exon            1379..1484
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /inference="alignment:Splign:2.1.0"
     exon            1485..1634
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /inference="alignment:Splign:2.1.0"
     exon            1635..1682
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /inference="alignment:Splign:2.1.0"
     exon            1683..1784
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /inference="alignment:Splign:2.1.0"
     exon            1785..2097
                     /gene="Atg16l2"
                     /gene_synonym="RGD1311400"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggcgggac ccagcgcccc ctgcgatccc tgcgcgcccg ttgccgcctg gaagcgccac
       61 atcctgcgac agctgcggca tcgggaccgc acgcaaaagg cgctcttctt ggagctagtg
      121 ccggcttata accatctctt agagaaggct gaactgctag ccaagttctc agaaaagctg
      181 aagtcagaac caaaggatgt catctccacc ccacatcagg actcgaggga ggaggcctca
      241 gggacaggcc ctgaccaagt ctcatcacca gcctccctga aggtgaagtg gcagcaggag
      301 aagaagggtc tgcagctggt ctgtggtgag atggcctacc aggtggtgag gaagagcgca
      361 gccctaaaca ccctgcagtc acagctagag gagcgtcagg gcaggctgga agccctgcag
      421 gcctgtgtgg tgcagctaca ggaggcgcgg gctcagcagt cccggcagct ggaggaacgg
      481 caagcggaga actcggcaca gagagaagcc tacgagactc tgcgcgagca agctgcgcac
      541 caggaagcgg cactgcgcag gctccaggaa gaggcacgcg acttgctgga gcaacttgtg
      601 cagcgtaagg cgcgcgccgc cgccgagcgc aatctacgta acgagcgtag agagagggcc
      661 aatcaggctc gggtgtccca ggagctgaag aaagcggcca agcggactgt gagcatcagc
      721 gagatcccaa acactctaga agatgggacc aaagaggaga ctgtggctct aggtcctgcc
      781 gctaagcccg agttcctgga gagtgacagt tgtgaaaaat ggaagaggcc ttataggtct
      841 gcctcagcca cctctctgac actgtcccgc tgtgtggatg tggtgaaggg gctgctggac
      901 ttcaagaaaa gaagaggtca ctcggttggg ggtgtctctg agcagcggta ccagagcatc
      961 cctgtgtgtg tgtctgccca aattccttcc caggctcaag atgtcttgga tgcccatctc
     1021 tctgaggtca atgctgtttg ttttgccccc aatagcagcc tcctggcaac tggaggggca
     1081 gaccggctta tccatctctg gaatgttgta ggcggtcgcc tggaggccaa ccaaaccctg
     1141 gaaggagctg gtggcagcat caccagtgtg gattttgacc cctcgggctc ccaggttttg
     1201 gcggctactt acaaccaggc tgcccagctc tggaaggtgg gagagacaca atccaaggaa
     1261 acattgtctg gacacaagga caaagtgaca gctgccaaat tcaagctaac aaggcaccag
     1321 gcagtgactg ggagccgaga ccggacagtg aaggagtggg acctgggccg cgcctactgt
     1381 tccaggacca tcaatgtact ttcctactgc aatgacgtgg tatgcgggga ccacatcatc
     1441 atcagtggcc acaatgacca gaagatccgg ttttgggaca gcaggggccc acactgcatc
     1501 caggtcatcc ctgtacaggg ccgggttacc tccctgaacc ttagccatga ccagctgcat
     1561 ctgcttagct gttcccgaga caatacgctg aaggttatcg acctacgaat cagcaatatc
     1621 cgacaggtgt tcagggcgga tggcttcaag tgcagttctg attggaccaa agctgtgttt
     1681 agccccgaca gaagctatgc actggtgggc tcctcaaatg gcaccctgta catctgggat
     1741 gtgaacactg ggaaactgga gaccagccta cagggaccgc actgcactgc tgtcaatgcc
     1801 gtggcttggt gcttctccgg gaaccatgtt gtgagtgtgg accaagtcag gaaggtggtg
     1861 ctctggcact agtggcacaa gttccctgta tggtttggac tctgttctga agccagaagc
     1921 cagagagcag cttccctgtg ctcaggactc cagagctggg gttggggtct actgtagaat
     1981 tcacgtgagg gccaggcagg acctggcctg tttgtttaaa atcaaagtgt gggttaggaa
     2041 ctacagttct tgaaaatctg tttactctcc tcagtgttaa aaactatatg taagaca
//
