LOCUS       XM_006245420            3132 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus autophagy related 16-like 1 (Atg16l1),
            transcript variant X2, mRNA.
ACCESSION   XM_006245420
VERSION     XM_006245420.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006245420.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006245420.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3132
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3132
                     /gene="Atg16l1"
                     /gene_synonym="Apg16l; Wdr30"
                     /note="autophagy related 16-like 1; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 37
                     ESTs, 10 long SRA reads, 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 224 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:363278"
                     /db_xref="RGD:1310631"
     CDS             241..2007
                     /gene="Atg16l1"
                     /gene_synonym="Apg16l; Wdr30"
                     /codon_start=1
                     /product="autophagy-related protein 16-1 isoform X2"
                     /protein_id="XP_006245482.1"
                     /db_xref="GeneID:363278"
                     /db_xref="RGD:1310631"
                     /translation="MSSGLRAADFPRWKRHIAEELRRRDRLQRQAFEEIILQYTKLLE
                     KSDLHSVLTQKLQAEKHDVPNRHEISPGHDGAWNDSQLQEMAQLKMKHQEELTELHKK
                     RGELAQLVIDLNNQMQQKDKEIQTNEAKIAECLQTISDLEADCLDLRTKLQDLEVANQ
                     TLKDEYDALQITFTALEEKLRKTTEENQELVTRWMAEKAQEANRLNAENEKDSRRRQA
                     RLQKELAEAAKEPLPVEQDDDIEVIVDETSDHTEETSPVRAISRAATRRSVSSIPVPQ
                     DVVDTHPASGKDVRVPTTASYVFDAHDGEVNAVQFSPGSRLLATGGMDRRVKLWEAFG
                     DKCEFKGSLSGSNAGITSIEFDSAGAYLLAASNDFASRIWTVDDYRLRHTLTGHSGKV
                     LSAKFLLDNARIVSGSHDRTLKLWDLRSKVCIKTVFAGSSCNDIVCTEQCVMSGHFDK
                     KIRFWDIRSESVVREMELLGKITALDLNPERTELLSCSRDDLLKIIDLRTNAIKQSFS
                     APGFKCGSDWTRVVFSPDGSYVAAGSADGSLYVWSVLTGKVEKVLSKQHSSSINAVAW
                     APSGLHVVSVDKGSRAVLWAQP"
ORIGIN      
        1 cggccgagct tgcgcgcggc ctacgacgtt cggcaatgag gcgggccttc cggccttctc
       61 caacataatt tccggcagac accggaaaac catcccagat agcctcaggg gtgcccggtg
      121 tggagaggtg aggttccgga ggccggcttc tgttggctcg cgccttgcag cacgctgcaa
      181 cctgcagtcc tgagtgtcgg cgcggatcgg ccgccctgag gcgccggggc agcattcgac
      241 atgtcgtcgg gcctccgcgc cgcagacttt ccccgctgga agcgccacat cgcggaggaa
      301 ctgaggcgcc gggaccggct gcagaggcag gcgttcgagg agatcattct gcagtatacc
      361 aagttgctgg agaagtcaga tcttcattca gtattgaccc agaaactaca ggctgaaaag
      421 cacgacgtac caaataggca tgaaataagt cctgggcacg atggtgcatg gaatgacagt
      481 cagctacaag aaatggccca gttgaagatg aaacaccagg aagagctgac tgaactgcac
      541 aagaagcgtg gggagttagc tcagttggtg attgacctga ataaccagat gcagcagaag
      601 gacaaggaga tacagacgaa tgaagcaaag attgcagagt gtttacagac catctctgac
      661 ctggaggcag actgcctgga cctgcgcacc aaactgcagg accttgaggt agccaaccag
      721 accctgaagg atgagtatga tgccctgcag attactttta ctgccctaga agagaaactg
      781 aggaaaacta ctgaggagaa ccaggaactg gtcaccaggt ggatggctga gaaggcccaa
      841 gaagccaatc gccttaatgc ggagaatgag aaggactcca ggaggcgaca agcacggttg
      901 cagaaggagc ttgcagaagc agcaaaggaa cctctacctg tcgaacagga tgatgacatt
      961 gaagtcattg tagatgagac ctcagatcac acagaagaga cctctcctgt gcgagccatc
     1021 agcagagcag ctacgagacg ctctgtctct tccatcccag tcccccaaga tgtcgtggac
     1081 actcatcctg cttctggtaa agatgtgaga gtcccaacta ctgcctcgta tgtctttgat
     1141 gcacatgacg gagaggtcaa tgcagtacag ttcagtccag gctcccggtt actggccact
     1201 ggaggcatgg accgcagggt taaactttgg gaagcattcg gagataaatg tgaattcaag
     1261 ggctccctgt ctggcagcaa tgcgggaatt acaagcattg aatttgatag tgctggagct
     1321 tacctattag cagcttcaaa tgattttgca agccgaatct ggactgtgga tgattatcga
     1381 ttacggcaca cacttaccgg ccacagcggg aaagttctct ctgccaagtt cctgctggac
     1441 aatgcacgga tagtctcagg aagtcatgac cggaccctca aactctggga tctccgcagc
     1501 aaagtctgta tcaaaacagt gttcgcaggg tccagctgca atgacattgt ttgcactgag
     1561 caatgtgtaa tgagtggaca ttttgacaag aaaattcgtt tctgggatat ccggtcagag
     1621 agtgtggtcc gagagatgga actgttaggg aagatcactg ctctggactt aaaccccgag
     1681 aggactgagc tcctgagctg ctcccgtgat gacctgctaa aaatcattga cctgcggaca
     1741 aacgccatca agcagtcatt cagtgcacct ggattcaagt gtggctctga ctggacccga
     1801 gttgtcttca gccctgatgg cagttacgtg gcagcaggct cagctgacgg ctctctttat
     1861 gtatggagtg tgctcacggg gaaagtagag aaggttctct ccaagcagca cagctcttct
     1921 atcaatgcgg tggcgtgggc cccctctggc ttacatgttg tcagtgtgga caaaggaagc
     1981 agagctgtgc tatgggcaca gccttgatgc cactccctga ggagcagcgt gggaccccgc
     2041 agcccatttt ggagaatgat gtgtcctccc agagaagagc tgaagctata tggcacccac
     2101 cgtacctttc ctaagaactt tgacttaagg tctctaatgg gtgagaagaa ccaacacaga
     2161 accaaactga ctcgcacgtc cctagcaggg gttccggttc ttgtcgcatg tgggtgggaa
     2221 acactactaa ctctgacctt ccatacctca tggggagcac agggtccctg ctgggtctcc
     2281 ccactggaca cagtgccaag gacagcccca cacatcgggt attgggtccc ctgtgctttt
     2341 cccgtctttc caaagtctgt tgtagcctga tgcacacccc ttttctgtgg ggtcacttac
     2401 ccagggggct cactgaaggc attgggttag tggaaaccaa atcagggcct gtcctcctgt
     2461 gacaaaggat gggtggggct gttttcaggg ctggtgatat gtctggtctc actgctgaaa
     2521 cctgcatctt gagctggcct tcagaactcc gagctccctt cctgccaaca cctacacata
     2581 gctttgtgtg tgcgaggaaa gaactgtgcc aacctttccc tgtccggtag aatttgccgc
     2641 tgaaatgaga aacacatctt tacccagcat cactgccagt cacagcagtg gcttagcgct
     2701 catctggagc tggtggtggg gagtccagcc actgcctgtg tatgcagtgt agtgttggta
     2761 agagaagcct atctgggagc tggtcatgct gaaggctggg aaagcaccct ctgtcctgct
     2821 tacccatgca cacggtctga gcacggtgtc tgggtgtcca aagcaccacg tttgtcacat
     2881 ttactttgca ctttattttt tgcttccgcg ctggctctct ggacagtagg aacagacatg
     2941 agttctagaa ctagggaaga gggacagcag tccttccctg cttgcaactc acctgtcatt
     3001 cgctgccaga gagctagtgg tgttgggagt tgagagtggc tggccagggc acatctttta
     3061 tttatttaat tatgtgtccc aacagaactt gactgtaaat aaagaagaaa ttctgttata
     3121 tacttttcaa ac
//
