LOCUS       XM_039103152            3366 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus autophagy related 10 (Atg10),
            transcript variant X6, mRNA.
ACCESSION   XM_039103152
VERSION     XM_039103152.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3366
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3366
                     /gene="Atg10"
                     /note="autophagy related 10; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 4 samples with support for
                     all annotated introns"
                     /db_xref="GeneID:688555"
                     /db_xref="RGD:1587624"
     CDS             1861..2460
                     /gene="Atg10"
                     /codon_start=1
                     /product="ubiquitin-like-conjugating enzyme ATG10 isoform
                     X6"
                     /protein_id="XP_038959080.1"
                     /db_xref="GeneID:688555"
                     /db_xref="RGD:1587624"
                     /translation="MSHSTHLCGTGTHILAEFPFNMEDEFFGEESFQHCCAEFIRHSQ
                     QIGDGWEWRTAKENLELPVDDSEAVGPAAAAVIRQEYHVLYSCSYQVPVLYFRASFLD
                     GRPLALEDIWEGVHECYKLRLLQGPWDTITQQEHPILGQPFFVLHPCKTNEFMTAVLK
                     NSQKINRNVNYITSWLSIVGPVVGLNLPLSYAKATSQSE"
ORIGIN      
        1 tgctgggaat tgaactcagg acctctggaa gagcagtcag tgctcttaac cgctgagcca
       61 tctctccagc ccgtaagtgg agtctcttga gtgggaggct ctgtgtgacc tgcttgcacc
      121 ctgttccccg gagtttgttg tagtcctcaa tgcattctga gtcatctcaa cctattccca
      181 cgtcacgatt gccctgtcta catcttattc agtgccacag agttcttttt aattcatagc
      241 tcctggacca gttgaagtct tctctaaagc ataggctgta ggcatggaat gttcttggct
      301 gttactacta taacagccat agcaagctgc ttttcctgta gttcaatttc ctccactaca
      361 gagaaaatta cagtggcata cctcaaaaag atgctatgcg gattttagtc accatggttt
      421 tgttgcatag gaaaggcata ataatgctat ttttaattat catatcaaca acccatatta
      481 attcctcaaa acagtggtcg tattgtttat catcgatttt tactgtgttt tattactgtt
      541 ctctttagct tggaagtttt cacataaact tgattaccag ctgtaggaag caaagccatg
      601 atttatactt attgatacat tttcttctaa aaagtctcaa gtctctcagg ttgatattga
      661 gggctcagta tctttcttct tatctcgtta tctggtttct tgtatattag ccattttatc
      721 tgttttgctt ataattttaa attctagtcc tgactgtctc aagagtattt gagctgactt
      781 ttaaacccat aaatgatata gtagcaagga taaatcgtgg ccatgaagat aggaagttcg
      841 agtaaaaaga catttggatg agtcacacag aagtacatct tatatttttt tccttgttct
      901 atgtgactga ggcagccata gacggagttc tgaacttcat gatggtcaaa ggaaaggtgg
      961 aaacacacca catactctgc aaaaacacgg cttcctgcgt taaaagaatt gggaatcttt
     1021 ccctgagagg tcattactat gagctcccac atcagcaaac aaaaactcaa gtcagtggaa
     1081 actacatgtt caaggaaaat aaaacttagg ctctttctag cagccgacct ggaatgaccc
     1141 acataagtct attgcttcaa agtcttcaga gatcacctca ccttgttttc ctctttggaa
     1201 aagcctttgc cttgttcctg tatggtagag ccccgactgc ttgtgttctg aactccaaat
     1261 tcttcttctt tttttcctaa taaataccag tgaggatcac gtacgtggct tactgctttc
     1321 agggacaccc cattaatccc tagcctcttt tccttttttt taaaaaaaag gttttattta
     1381 ttttatatat gtgagtacac tgtagccgtc ttcagacacg ggcatcagat ctcattacag
     1441 atggttgtga gccaccatgt ggttgctggg aattgaactc aggacctctg gaagagcagt
     1501 cagtgcactt aaccattgag ccatctctcc agcccccaat tcttgaatca cttagcgact
     1561 cagcctcttt aaagataaag agtttatctt ctagccccta gacatgagta cagagtgcat
     1621 ggagtgccaa ctatagccac agactcagag agaacccagg tgctgtcatt ctcctcatct
     1681 tgttgacctg aaatcgacta acactgtcca ggaggctcta ctgcaggtgg tggtggtggt
     1741 gatgaggatg atgatgactg tgactgatga tgatgtcagc aataatggtg atgatgatga
     1801 caacgacaat gatggcagcg atgatggtga tggtgaagat ggttattttg agacagtgtc
     1861 atgtcacata gtacacatct gtgtggaact ggaactcaca ttttagctga gttcccattt
     1921 aacatggagg acgagttctt tggagaagaa agcttccaac attgttgtgc agaattcatc
     1981 agacattcac aacagatagg cgatggctgg gaatggagaa cggccaagga gaacttggag
     2041 ctaccagtgg atgattctga agccgtgggg cctgcggcgg cggcagtgat tagacaggag
     2101 tatcatgtct tatactcctg tagctaccaa gtgcccgttc tgtactttag ggcaagcttt
     2161 ttagatggga gacctttagc tctggaggat atatgggaag gagtccatga atgctataag
     2221 ctgcggctgc tccagggacc gtgggatacc atcacccagc aggagcatcc aatacttggg
     2281 caaccatttt ttgttctaca tccctgcaag acaaatgaat tcatgactgc tgtgctaaag
     2341 aattcacaga aaatcaatag aaatgtcaac tacatcacat catggctgag catcgtggga
     2401 ccagttgttg gtctgaattt acctctgagc tacgccaaag caacatcaca atctgagtga
     2461 tctgtgaaca agcaagatct gctgatccta gaaactgcag catgaaggat agcaagagct
     2521 ctgcctggga agcctcagct ttcatggaaa tgggactgca gtatctcatg tcaccaagat
     2581 ttgatgcgga gttctttcct cagaaagaag acatctgcaa aacctgtttg cttgggatag
     2641 tggttgtatg gaaggaacaa gtcacggatt cagatcacta taaacaacaa agatgaacct
     2701 atttcagtgg tgatgtcatt gctggcatca tcaaggctca cacaggttct ttttgccttg
     2761 gcacagttct tctgttgtgg agattgatgg ggaagtatat ttgtgtgctt gctttagtgt
     2821 acaatgtgtg aaaattaaaa tgtagaactt gcctgtttct gaaaattaat gttatacatt
     2881 tgacccatct taaattattc tccaacagtc aaactcagga gcaatgggtt atttctcaat
     2941 tactcaccaa aaaaaaaaaa aaaaagtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgta
     3001 catagaaaat tagatacaga ataaagaata actgatcatt ttaatataat gatgtatttt
     3061 acaagccagg tatagaaagg taactacagg tttttaaaat agctataaaa aacattcaag
     3121 cattgcaaat gctttttttt taataaaaat aacacagttg tttttccttc tatgtgtgag
     3181 acccatgact gttctgctgc aatactgcag gcttttgtgt aagtcttcat agccctacaa
     3241 tgttctttct aatatgagaa taacaagctg tctcataatg ttgctgtgag aactatatga
     3301 agtcattaac acacaactat tgaaacacgt atacaaatat taattaaatg ttcacctgct
     3361 gcataa
//
