LOCUS       NM_001107893            7829 bp    mRNA    linear   ROD 13-SEP-2019
DEFINITION  Rattus norvegicus activating transcription factor 7 interacting
            protein (Atf7ip), mRNA.
ACCESSION   NM_001107893 XM_001070613 XM_003749858 XM_003753954 XM_232488
VERSION     NM_001107893.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 7829)
  AUTHORS   Timms RT, Tchasovnikarova IA, Antrobus R, Dougan G and Lehner PJ.
  TITLE     ATF7IP-Mediated Stabilization of the Histone Methyltransferase
            SETDB1 Is Essential for Heterochromatin Formation by the HUSH
            Complex
  JOURNAL   Cell Rep 17 (3), 653-659 (2016)
   PUBMED   27732843
REFERENCE   2  (bases 1 to 7829)
  AUTHORS   Fujita N, Watanabe S, Ichimura T, Ohkuma Y, Chiba T, Saya H and
            Nakao M.
  TITLE     MCAF mediates MBD1-dependent transcriptional repression
  JOURNAL   Mol. Cell. Biol. 23 (8), 2834-2843 (2003)
   PUBMED   12665582
REFERENCE   3  (bases 1 to 7829)
  AUTHORS   De Graeve F, Bahr A, Chatton B and Kedinger C.
  TITLE     A murine ATFa-associated factor with transcriptional repressing
            activity
  JOURNAL   Oncogene 19 (14), 1807-1819 (2000)
   PUBMED   10777215
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AABR07062350.1, AABR07073078.1, AC117362.6 and FQ190019.1.
            
            [WARNING] On May 7, 2024 this sequence was replaced by
            NM_001107893.3.
            
            On or before Sep 13, 2019 this sequence version replaced
            XM_003749858.4, XM_003753954.4, NM_001107893.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments. The extent of this transcript is
            supported by transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00052296,
                              SAMD00052297 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-153               AABR07062350.1     187890-188042
            154-1593            AABR07073078.1     26157-27596
            1594-1847           AC117362.6         222017-222270       c
            1848-1925           AC117362.6         219357-219434       c
            1926-2071           AC117362.6         217982-218127       c
            2072-2209           AC117362.6         216077-216214       c
            2210-2275           AC117362.6         212814-212879       c
            2276-2349           AC117362.6         210356-210429       c
            2350-2438           AC117362.6         207159-207247       c
            2439-3074           AC117362.6         202966-203601       c
            3075-3139           AC117362.6         200328-200392       c
            3140-3218           AC117362.6         196981-197059       c
            3219-3374           AC117362.6         194182-194337       c
            3375-3557           AC117362.6         188909-189091       c
            3558-3670           AC117362.6         186879-186991       c
            3671-7812           AC117362.6         179325-183466       c
            7813-7829           FQ190019.1         1-17                c
FEATURES             Location/Qualifiers
     source          1..7829
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="mixed"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q43"
     gene            1..7829
                     /gene="Atf7ip"
                     /note="activating transcription factor 7 interacting
                     protein"
                     /db_xref="GeneID:312800"
                     /db_xref="RGD:1306030"
     exon            1..153
                     /gene="Atf7ip"
                     /inference="alignment:Splign:2.1.0"
     exon            154..1847
                     /gene="Atf7ip"
                     /inference="alignment:Splign:2.1.0"
     CDS             161..4090
                     /gene="Atf7ip"
                     /codon_start=1
                     /product="activating transcription factor 7-interacting
                     protein 1"
                     /protein_id="NP_001101363.2"
                     /db_xref="GeneID:312800"
                     /db_xref="RGD:1306030"
                     /translation="MDNIEEPQKKVFKARKTMRASDRQQLDAVHRVKEELLRTDGKLL
                     NGNHENGDLDPTSPLENTDCIQDKEEVNGVDGICFESEESKTEWKETPCIPTVGVKNK
                     QEDLNSEALSPSITSDLASKVTTEPASGTPASDNPGCDTLASDNPGCDTLASDNPASD
                     NPASDNPASDNPGSGDLAAGELTTRVPTAGESACEELPSSHPSSSDPSSSDPTFSDPC
                     CSDPVSGDTASEEPTSDALASGDSASGDSASGEPVSHEPASSEPASEERVTGAVASCD
                     LASGESALDDCVTSGDSPSDDLPSSEESLRTSVCSRLASGELIPGELTVESATDSFKP
                     SSVPVCEPGPDTDKTEQNSKNNDDCPDRNDDDEDLAQIQSKDAFDEGNKVNSNVAEKE
                     GTLETHSAIIHSDHLPPENTKKVEEDAVAEPALEEEAISSSMEVDQSEKDRHKSPVEL
                     VDAASEDPTEEGKKNTVSDNTDSMETDEIIPILEKLAPTEDELSCFSKTSLLPVETSQ
                     DLEDKMEGSFGSPSKQESSENLPKEAFLVLSDEEDISCGKDESEVLAQNKTSSPEGER
                     SEKDSKAEEEKRVPDEERPPGRNEFSRRKRSKSEDMDSVQSKRRRYMEEEYEAEFQVK
                     ITAKGDINQKLQKVIQWLLEEKLCALQCAVFDKTLAELKTRVEKIECNKRHKAVLTEL
                     QAKIARLTKRFGAAKDDLKKRQESPPNPPISPGKPANDVNSNNNVTYRNAGTVRQLLE
                     SKRNISEGPPPSFQTPVNTVSSASHGPSSAAVSSQPKVQPSATSGSLPAAPLLPVPST
                     ATVVATTQVPSGNPQPTISLQPLPVILHVPVAVTSQPQLLQSHPGTLVTNQPSGNVEF
                     ISVQSQPTVSGLTKTPVSLPPLPNPTKPNIPSVPSPSIQRNSSATAAPLGTTLAVQAV
                     PTAHSIVQATRTSLPPVGPSGLYSSSSSRGSIQMKIPIPAFSTSSSAEQSSSATPRAE
                     NQTNKTVDSAVNKKAADSTSQSGKASSNDSSGVIDLTMDDEDSGTTQDPKKLNPPSAS
                     TVSTSQPMSRPLQPILPAPPLQPSGVPTSGPSQATIHVLPTAPTTVNVTHRPVTQVTT
                     RLPVPRAPANHQVVYTTLPAPTTQAPLRGTVMQAPAVRQVNPQNSVTVRVPQTTTYVV
                     NNGLTLGSAGPQLTVHHRPPQVHNEPPRPLHPAPLPEAPQPQRLPPEAANTSLPQKPH
                     LKLARVQSQNGIVLSWSVLEVDRSCATVDSYHLYAYHEEPSATAPSQWKKIGEVKALP
                     LPMACTLTQFVSGSKYYFAVRAKDIYGRFGPFCDPQSTDVISSSQSS"
     exon            1848..1925
                     /gene="Atf7ip"
                     /inference="alignment:Splign:2.1.0"
     exon            1926..2071
                     /gene="Atf7ip"
                     /inference="alignment:Splign:2.1.0"
     exon            2072..2209
                     /gene="Atf7ip"
                     /inference="alignment:Splign:2.1.0"
     exon            2210..2275
                     /gene="Atf7ip"
                     /inference="alignment:Splign:2.1.0"
     exon            2276..2349
                     /gene="Atf7ip"
                     /inference="alignment:Splign:2.1.0"
     exon            2350..2438
                     /gene="Atf7ip"
                     /inference="alignment:Splign:2.1.0"
     exon            2439..3074
                     /gene="Atf7ip"
                     /inference="alignment:Splign:2.1.0"
     exon            3075..3139
                     /gene="Atf7ip"
                     /inference="alignment:Splign:2.1.0"
     exon            3140..3218
                     /gene="Atf7ip"
                     /inference="alignment:Splign:2.1.0"
     exon            3219..3374
                     /gene="Atf7ip"
                     /inference="alignment:Splign:2.1.0"
     exon            3375..3557
                     /gene="Atf7ip"
                     /inference="alignment:Splign:2.1.0"
     exon            3558..3670
                     /gene="Atf7ip"
                     /inference="alignment:Splign:2.1.0"
     exon            3671..7813
                     /gene="Atf7ip"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccggcgcgtg ctggggagaa gcgggtttgt ttttgaatct gcggtggcgg cgagtggagc
       61 gcacggctga gacggcagcg tccgggacgg ctgcgcggga cggctgcgta ggaaggaact
      121 cgggtcccag gccctcacct cccgcccccg aagattcaaa atggataata tagaggaacc
      181 acagaaaaaa gtcttcaagg ctcgaaaaac aatgcgagca agtgatcgcc agcagctcga
      241 cgctgtgcac agagtcaaag aggagctgct gagaactgac gggaaactgc taaatgggaa
      301 ccatgaaaat ggagacctgg atcctacttc acctttggaa aacacagatt gtattcaaga
      361 taaagaagaa gtgaatggtg ttgatgggat ttgttttgaa tctgaagaaa gtaaaacgga
      421 atggaaagaa acaccgtgta tccccactgt tggtgtaaaa aacaagcaag aagatttgaa
      481 tagtgaagct ttgtccccca gtataacttc tgatcttgct tctaaagtaa ccactgaacc
      541 agcttctggt actccagcct ccgataaccc aggatgtgat accctagcct ccgataaccc
      601 agggtgtgat accctagcct ccgataatcc agcctctgat aatccagcct ccgataaccc
      661 agcctctgat aacccaggct ctggtgatct ggctgcagga gagctgacga ctagagtacc
      721 aaccgctggt gagtccgcct gtgaggagct cccctccagc catccatcct ctagcgatcc
      781 ctcttccagt gatcccacct ttagtgatcc ctgctgtagt gatcctgtct ctggagatac
      841 tgcttctgaa gaacccacct ctgatgctct tgcctctggt gactccgctt ctggtgactc
      901 cgcttctggt gagccagtgt ctcatgagcc agcttcaagt gagccagctt cagaagaaag
      961 agtcacaggt gcagtggcgt cttgtgacct ggcctctggg gagtcagctt tggatgattg
     1021 tgtcacctct ggtgactcgc cttctgatga tctgccttct agtgaggagt cgcttcgtac
     1081 gtctgtctgc agcagactgg cttctggtga gttgattcct ggtgagctca ctgtggaatc
     1141 agccactgac agttttaaac caagttcagt gccggtttgt gaaccaggtc ctgacactga
     1201 caagacagag cagaatagca aaaacaatga tgattgtcca gacaggaatg acgacgacga
     1261 agacttagcc caaattcaaa gtaaagatgc atttgacgag gggaataaag tgaacagtaa
     1321 tgttgctgag aaggaaggaa ctctagaaac acacagtgca attattcatt ctgatcatct
     1381 acctccagaa aatacgaaga aggtagagga agacgctgtt gccgagcctg ctcttgagga
     1441 agaggccatc tccagcagca tggaagttga ccaaagtgaa aaggacaggc ataaaagtcc
     1501 tgtagaactt gttgacgctg ccagtgagga ccccacggag gagggcaaga agaatactgt
     1561 ctcagacaac acggactcta tggaaacaga tgagatcatc cctatcttgg aaaaacttgc
     1621 acccactgag gatgaactca gttgcttttc aaaaacttct ctccttccag ttgaaacaag
     1681 tcaagacttg gaggataaaa tggagggttc ttttggctca ccctcaaaac aagaaagtag
     1741 tgagaatttg ccaaaagaag cctttttagt cctttctgat gaagaggata tttcgtgtgg
     1801 aaaagatgag tctgaagttc tagcacagaa taagacgagc tctccagagg gagaaaggag
     1861 tgagaaggac agcaaagctg aggaagagaa gcgagtgccc gatgaggagc ggccgcctgg
     1921 gagaaatgaa ttttccagac gaaaacggtc caagtcagaa gacatggaca gtgtgcagtc
     1981 caaacggcgg cgatatatgg aagaagaata cgaggcagag tttcaagtaa agatcacagc
     2041 caaaggagac atcaaccaga agcttcaaaa ggtcatacag tggttgctag aagaaaaact
     2101 gtgtgcccta cagtgtgctg tgtttgataa gacgttggca gaattaaaaa cacgagtgga
     2161 gaagatagag tgcaacaaga ggcataaggc agtgctcacc gagttgcagg ccaagatagc
     2221 cagattaacc aaacgttttg gagcagccaa agatgatctt aagaaaagac aagaaagccc
     2281 tccaaaccca cccatatcac caggaaagcc tgccaatgac gtcaatagca ataataatgt
     2341 gacctacaga aatgcaggca cagtgcgaca gctgctggag tccaaaagaa atattagcga
     2401 gggtccacca ccgtcctttc aaactcctgt gaatacagtg tcttcagcca gccatggccc
     2461 gtcctcagca gctgtcagta gccagcctaa agtgcagccc tcagcaacct caggctctct
     2521 gccggcagca cctcttctcc ctgtgcccag cacggccaca gtagttgcca ctactcaggt
     2581 gcctagtggg aaccctcagc ctaccatctc tctgcagccc ttgccggtga ttctgcatgt
     2641 gcccgttgcc gtaacctctc agcctcagct cctgcaaagc catccaggga ctttagtgac
     2701 caatcaacca tctggcaatg tggaattcat atcagtacaa agccaaccta cagtgagtgg
     2761 tcttaccaaa actccagtct ccttgccacc tctgccaaac cccactaaac caaacattcc
     2821 gtcagtgccc agtcctagta ttcagaggaa ctcttcagcc actgctgcac ctttgggaac
     2881 aacacttgct gtacaggccg ttccaactgc acattctatt gtgcaagcca cgaggacttc
     2941 tctaccccca gtcggcccat caggactcta tagctcttca agcagccgag gctccataca
     3001 gatgaaaatc ccaatccctg cgtttagcac ttcctcctct gcggaacaga gcagctctgc
     3061 caccccccgg gctgaaaacc agacaaacaa gacagtagac tctgctgtta ataagaaagc
     3121 agctgatagc acatcccaga gtggaaaagc ttctagcaat gactcaagtg gtgtcattga
     3181 tctcacgatg gacgatgagg acagcgggac tacacaagac cccaagaagc taaatcctcc
     3241 ttctgcgtct actgtgagta cttctcagcc catgtctcga ccattgcagc ccattctacc
     3301 agcaccacct cttcagccct caggggtgcc aacaagtggg ccatctcagg caactatcca
     3361 cgttctgcct acagctccaa ccaccgtgaa tgtaacacat cgtccagtaa ctcaggtgac
     3421 cacaagactc cctgtaccaa gagctcctgc aaaccaccaa gtggtttata ccactctccc
     3481 cgcaccaact actcaggctc ccctacgagg aactgttatg caggctcctg ccgtccgcca
     3541 ggtcaatccg caaaatagtg ttacagttcg agtgcctcag acaaccacgt acgttgtaaa
     3601 caatggactg actctaggat ccgcagggcc tcagctcacg gtgcatcaca ggccaccaca
     3661 agtgcacaat gagcccccac gccctctgca tccagcgccc ttaccagaag ccccgcagcc
     3721 acagcgcctg cccccagaag ctgccaacac ttctctgcct cagaaaccac acttgaagtt
     3781 agcgcgagtg cagagtcaga atggcattgt cctgtcctgg agcgtcctgg aagtggaccg
     3841 gagctgtgcc accgtggaca gttaccatct gtacgcctac cacgaggagc ccagtgccac
     3901 tgcgccctca cagtggaaga agatcggcga agtcaaagcc ctccccttgc cgatggcttg
     3961 tactctcacg cagtttgtgt ctggcagcaa gtattacttt gccgtgcgcg ccaaggacat
     4021 ttatggccgt tttgggcctt tctgtgaccc tcagtccacg gacgtgatct cttcgtccca
     4081 gagcagttag accttggagc tctttagctt tcacttttga aggtttcaca tttgggcttg
     4141 tttttaatct tgtgcatgaa attcaatgta aaaatccatc ttgtgcaaga tctcccggac
     4201 agatgactgt atacactacg tttgtttatg aaccggaagc aaaataaatt cagcccataa
     4261 agcaagtctt cccctgaaca gttcaaactt cggggttttg aaatgtatat ttattccttg
     4321 ctttggtttt gaggctgggg aatatgtatg ggtgtttgtg tgttttcttc ctttctttga
     4381 aattttaaat ttctagttgt atgtatatca cagtgcgatc tcctgttttc ctctcaaatt
     4441 tacctctctt ccagtaggaa gtgtattggt gagcgaatct gaggtgcaga gctggtgtga
     4501 ttctgcctcg aggggaggct aagatcaaag aatctaaata aaacccaaag aaagaaataa
     4561 aggaaaatat tcagcttaaa gtagatggat ttgagcaggg gatactccct gtgtttgctt
     4621 tgctttctca gttgctgaca aggtgaacag tgtcctgccc tcacctgagt tcctggcttc
     4681 tccttttgtg ttcgtgcctt aactgcagaa gtctacaggc catgtgtcca ttattgtaaa
     4741 ttcctcttta agctttcatt agttcattgc caccaaaatc ccgcaccctt ttaagtgttt
     4801 gagaagcaag atgtggacac gtgtgtgtgc acgcattctc catgacgtca ctgtcctcag
     4861 ctccacagtt ctgactcatg ttttaagaac atatttctat ctttgcccat catttaactg
     4921 cccatcttaa attgccatag tgtttaggaa caaatttcct taaggctgtt ttagcatcca
     4981 tgttatatta gggaatccga aggaagttct ggttcatctc agcactcagc actcacgggg
     5041 tggtgtcctt tcatgtcaga attcatgaaa gactagaaaa gctcagtttc ctcttgattc
     5101 tcaggaggtc cctactgctt tagtcagaac tgttttgatg gtgccaagtg gagtctgatt
     5161 taatctggtt tcagtagagc ctaaatgcta ccattggggt cattccatac ttggggtaga
     5221 tctgctcgct ttactgtttc tccttcaata cattaataga ctcaggctca gccttgcatt
     5281 tccaaggcat ggcagctgca gggagtcagg caggtgcctt cgagacctga ggggagcacg
     5341 agcattaggg acaagtgagg cgtttgtgga ggctgaaggc acttttgagc tgtctttcct
     5401 tacggtattt caagtcctat ttctaccttc acaagctgca tcagccattc acttgtcctg
     5461 gtattaaaag caggagccct gttccctctg tgtattctct gatggcttac agaaggaatc
     5521 gttatgaaaa aagtgtgtct gtcatcttta tgaaggaagc ctgcagttgc caaagtgtaa
     5581 atgcttctaa ccttccattc tgagaaaaag gataaccaca gcagaatcct tttcccacaa
     5641 gttcagcttg gcaagcaatc atgtcactag gactgccaag attcacaatc atgggaaact
     5701 gttgccagtg ttatggtaat aaggctttgg gaaggaagaa atgatttcct aattgctgtg
     5761 agcatgtctc tgtactgagg gtgtctgtct tacggatgca gtgttggtct ggtcaccatc
     5821 attcctgttt agtacaaaac gcgtattcag aatgtttttc cctggctggt ctgctcactg
     5881 gcgaatgaga gtctctggat aatatgtttg tttctattaa gtaattattt tgtatttacg
     5941 agttcttctt taaaaagttt tcatagtgtt acataatcac gtgaagaaag cccagtgggt
     6001 gttttttttt tttttgtcaa aggaaaaaaa agtcccaaat aatggctcta gatgtgactt
     6061 acttacttca gaaagtaatt actgtaaact gtttattcca gattggaaga aggtatagac
     6121 agagagtgta atcgtgggcc gtctcctcag atgactgtca tgatgctttt ctttgggcag
     6181 cagtcatgtt gagtttcccg aatatgctca acctgtgagt ggcaaaatgt aggtgctgac
     6241 gggtatcggc tttttatctg gctgttggtg agggagagtg gaggactttt tacttcctgg
     6301 tgtcttttct caaaagtatt ataaacaagc tcagttgtcc cctttctggg ggttccggtt
     6361 tgctacattt ttagcctgac aatactggta agtaagtatt gacttactgg gaatcctgga
     6421 gacttctgaa agttctagat gaggcatcag tcagtagtaa ccagtggtaa cagctgtgtc
     6481 tgttactccc agctttgcac tttgagtact tttcaccctg tattaagtgt gagtaagcct
     6541 ctgtgttctc gctgatggca tacagagact gcatgttgta gcagttcatg tcacaagctg
     6601 actgtgtccc tccgtttctc cgggcccctc tccacgctcg atctctttta aatctgcaga
     6661 gtgctgtgtg tactgtgtga tggatgcagt atgactttat gaacataaca gagctttctt
     6721 ccttggaagt acttgttggg atagcatttg cctcacagag aggcatcctt ccccagcccc
     6781 cacctatgcc agacaaagga tgccttgaaa acactgagag aagcaagcat ggggtcccag
     6841 aggcatctct tcagagctct cttccggtgt tggacaggtg ttctggtggc ttgctccaag
     6901 tgctttaaat agcctcagaa ttaccacttg gtgtcagtgt gaggtggtat tcattttgct
     6961 tcccatgagt ctcccagtac catatgtgat ttagaatgct ctatgtggct tcctctgttg
     7021 acatctgtga tttcacccca taggtcctac agagaaagcc ttccttcttc tgattcctcc
     7081 tcaggccatt tcactatctc aatatggtaa tttcccccct tgcctgtgac cgggtggact
     7141 ggaactagaa atgtccttgt gctgtcgaaa acagctctgt aaccatgcgc gattctgtct
     7201 tccttaatta ttttctgggc aaatggcttt aaaaaatatt taagggacac acaacaatta
     7261 gagcaattat gaggggtttg ttgtcgtagg agactaattc ttaaaactca tccccttgag
     7321 ccagccgaaa aggaggagct gaagtcacgc tctgctctgc tcccatctgc aaatgacttt
     7381 atcatgtttg agcttttgtt ttgtgtttta tatgtagcga tagcagagta cctatcattt
     7441 aaatatttaa atgtttcctc tctttatgta aataagggaa ctaagcaatc aaacaccttc
     7501 tgggcgatcc tagcagagga ctttatcaac catttcaaat gtacatgtaa caatgagccc
     7561 ctgtaggaaa cgcgcatccc aatgtctgtc tgccgaggtt ggaaatgtaa atactgagat
     7621 gtttcagacc ctctaaagtc tgacgccaac tgcgaggcag caggtcggtc accctatttt
     7681 tattaggttt tgaaggtttt aattttcatt cttatctaaa tgtacagtag agtggtgtct
     7741 gtctgtcgac tgtagtgggg tttgtccggc aagcctgaac tttatacttt gaaataaatg
     7801 actgggtttt taaaaaaaaa aaaaaaaaa
//
