LOCUS       XM_008769738            7252 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus activating transcription factor 6
            (Atf6), transcript variant X1, mRNA.
ACCESSION   XM_008769738
VERSION     XM_008769738.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008769738.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008769738.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7252
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7252
                     /gene="Atf6"
                     /note="activating transcription factor 6; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 75 ESTs, 1 long SRA read, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 167 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:304962"
                     /db_xref="RGD:1305471"
     CDS             107..2065
                     /gene="Atf6"
                     /codon_start=1
                     /product="cyclic AMP-dependent transcription factor ATF-6
                     alpha isoform X1"
                     /protein_id="XP_008767960.1"
                     /db_xref="GeneID:304962"
                     /db_xref="RGD:1305471"
                     /translation="MESPFSPVLPHGPESTLFAELGYFTDTDDVQFDAAHETYENNFD
                     HLNFDLDLMPWESDIWSPSSHFCSDIKAEPQPLSPASSSCSVSSPRSTDSCSSTQHVP
                     EELDLLSSSQSPLSLYGDSCHSPSSAEPLKEEKPVTGPGNKTEHGLTPKKKIQMSSKP
                     SVQPKPLLLPAAPKTPANASVPAKTIIIQTLPALMPLAKQQSIISIQPAPTKGQTVLL
                     SQPAVVQLQTPGVLPSAQPVLAVTGGATQLPNHVVNVVPAPVVNSPVNGKLCVTKPVL
                     QSSTRSTGSDIAVLRRQQRMIKNRESACQSRKKKKEYMLGLEARLKAALSENEQLKKE
                     NGSLKRQLDQVVSENQRLKVPSPKRRAVCVMIVLAFIMLNYGPMSMLEQDSRRVKPSV
                     SPANQRRHLLEFSAKEVKDTSDGDNQKNSYRYDHSVSNDKALMVLSEEPLLYIPPPPC
                     QPLINTTESLRLNHELRGWVHRHEVERTKSRRMTNSQQKTRILQGALEQGSNSQLMAV
                     QYTETTSISRNSGSELQVYYASPGSYQGFFDAIRRRGDTFYVVSFRRDHLLLPATTHN
                     KTTRPKMSIVLPAININDNVINGQDYEVMMQIDCQVMDTRILHIKSSSVPPYLRDHQR
                     NQTSTFFGSPPTATETTHVVSTLPESVQ"
ORIGIN      
        1 tcagcatatt ttgtcctccg gccgctgccg tttcggatta ctcaccgatc cgagttgcga
       61 gggagaggtg tctgtttcgg ggaagccggc ttctgttgcc ggcgccatgg agtcgccttt
      121 tagtccggtt cttcctcatg gaccagagtc cacgttgttt gctgagcttg gctatttcac
      181 agacacggat gatgtccagt ttgatgcagc acatgagact tacgaaaata attttgatca
      241 tcttaatttt gatttggatt tgatgccttg ggagtcagac atatggagcc ccagcagcca
      301 cttctgctca gacattaagg cagagcccca gcctctttct ccggcttcct ccagttgttc
      361 tgtctcttct cctcggtcca cagactcctg ttcttcaact cagcacgttc ctgaggagtt
      421 ggacttgttg tctagttctc agtctcccct ttccttgtat ggcgacagct gtcacagccc
      481 ctcctcagca gagccactga aggaagagaa gcctgtcact ggtcctggaa acaaaacgga
      541 acatggactg actccaaaga aaaaaatcca gatgagttca aaaccttcag ttcagcccaa
      601 gcctttgtta cttccagcag cacccaagac tccagcaaac gccagtgtcc cagcaaagac
      661 catcatcatt cagacactgc cagccctgat gccactggca aagcagcagt cgattatcag
      721 tatacagcct gcgcccacca aaggtcagac tgttttgctc tctcagcctg ctgtggttca
      781 acttcagacc cctggagttc tgccctctgc tcagccagta cttgctgtca ctggcggagc
      841 cacacagcta cctaaccatg tggtgaatgt ggtgccagcc ccggtggtga acagcccggt
      901 gaacggaaaa ctgtgtgtga ctaaacctgt tctacaaagc agcaccagaa gcacgggttc
      961 agatattgcc gtactgagga gacagcagcg tatgatcaag aaccgagagt ctgcttgtca
     1021 gtcacgaaag aagaagaaag agtatatgct aggcctggag gccaggttga aggccgccct
     1081 ctccgagaat gagcagctga agaaggagaa tgggtccctg aagcgacagc tggaccaggt
     1141 ggtgtcagag aaccagaggc tcaaagtccc aagtccaaag cgcagagctg tctgtgtgat
     1201 gatagtatta gcatttatca tgctgaacta tgggcccatg agcatgctgg agcaagattc
     1261 caggagagtg aaacctagtg tgagccctgc caatcaaagg aggcatcttt tagagttttc
     1321 agcaaaagaa gttaaagaca cgtcagatgg tgacaaccag aaaaacagtt acagatatga
     1381 tcattctgtg tccaatgaca aagccttaat ggtgctaagt gaagaaccat tactttatat
     1441 ccctccacct ccatgtcagc ccctcattaa cacgacagag tctctcaggt tgaaccatga
     1501 acttcgaggc tgggttcata gacatgaagt ggaaaggacc aaatcgagaa gaatgacaaa
     1561 tagccagcag aaaacccgca ttctccaggg tgctctggaa cagggctcga attctcagct
     1621 gatggctgtc cagtacacag aaaccactag catcagtagg aattctggga gtgagctgca
     1681 ggtgtattac gcttcgcctg gaagttacca aggcttcttt gacgccatcc gcaggagggg
     1741 agatacattt tacgtcgtat catttcgaag ggatcacctg ctattaccag ctaccaccca
     1801 taacaagacc acaagaccga agatgtccat tgtgttacca gcaataaaca taaatgataa
     1861 cgtgatcaat gggcaggatt atgaagtaat gatgcagatt gactgtcagg tcatggacac
     1921 caggatcctc cacatcaaaa gctcctcggt tcccccgtat ctccgagatc atcagagaaa
     1981 ccaaaccagc accttcttcg gttcccctcc cacagccaca gagacgaccc atgtggtcag
     2041 caccctccct gagtcggtac agtagtgcct gagctgcact gggaagcaga gagtgggcct
     2101 cgccaagctg aagagctgaa gaggacgctg ctctctgcct ctcggcaagc ggagaaccac
     2161 cttgtactgc aactccaggg aaagagagag aaaacaagag gccgttctgc ttttcaccgt
     2221 cttcccacag cgtgcagctg ctggagcaca gttctctgat ggccgtgcat ccctgtgggc
     2281 agtgtctcct ggtgttggtt ctgtgggtca tcttcagaac ttctcccgtc gtgtgttttg
     2341 ttctcagtca ccttccttca ggtcagaccc acttcctctt ctgtccactg cacttcctgg
     2401 cacagtcaag agtttttatt taaagcttag aacacatgct catgtggtta ccaccagttg
     2461 gctttctctc tcctttgatt caaatccatt ctgattatta tacttgagaa aacacatttc
     2521 aaaaaaccga gcagccaaaa acatcccaca aagagtcaaa acagttcgga gtttgggtaa
     2581 agggattatc tccagttggt agagtttatt tttacttgtg atttgtggtt cagccctgga
     2641 caaacaactg ttgtggggtc ccagaatgag ccgcacactg gagaccaggg aagggaaggc
     2701 cagttgtgga atgtaagagg aggggactcc gtttacatat gtgtttaacc atacgtatgg
     2761 cctcagtgga gttcagagcc acagccacct ttcactcttg gaagtctgcc aatcagcaaa
     2821 gatctttaaa ggcctcaggg caaatgcttt cctctcattg ggaatcctca gcccaggaca
     2881 cagtcctgtg aaaccaggct cagccaagga actcaaggtg actagattta agcaagactc
     2941 agtttccctt aaagacagac agtacacaga acaagcatgg cttcccagag aggctgcagc
     3001 ccagtgtggt gaaagtctca gtttctccag agagaagatg ataaggaact aagctctctt
     3061 tgttgttgct tagtggaata tttttaaaaa gctatgactg tgaacatgcc tttaatccta
     3121 gctccatttg aaagggaagg cagactgttt aatatcagcc tggtctacat atcaaattcc
     3181 aggacaggac agctaacggt gtctagagaa cccacctcaa aacaaacaaa caaataaata
     3241 aatacaaaaa gcaaaagtta tgttcacatc tattttatcg tattttccct gtttccttca
     3301 ccatagcaag cactgtccat tgtacattac aaatccacag ggatggatgc aggactcatg
     3361 tccttccccg tgagctgcct cccttcatat gattttaggt tttgacaact cttcccagct
     3421 ggctgccatt gtcagatgat tccattccag tgcacacaat ggcggctaag tcctcttctc
     3481 cctacaaggg aaaagaaggg cagccctcgg gggtcgcaca cagtcaggtc acctcctgac
     3541 tgtggcccca ttcgttatgc ctggcactgt tggaccaaca gccgttccct ggacattact
     3601 gctgccttct aagctagtta gacacttccg gggaagggcc attcttgctg aattcagtgc
     3661 cacacacagt ccatcctggt tggctttcta gtgattttca gactatacct gtttgccctg
     3721 gggaccagtc ctctactggg tgccatggag aagttagcaa atgcatggaa agtctttagg
     3781 agtagccact tgtgggagcg gtgggctgcc ctgtggctgt aggcagaggc cgtgtgctca
     3841 ttcctgacac tcatctgctg agagccacag tgtctgcagc ccctcaggtt caccaacgcc
     3901 tcagaccaaa ggcctcaaca gtgtcacagt tgctaaggct gatgcctctc ctacaggtaa
     3961 cagtggcggg gatggctgga ggacacagcc aaagagcaga cagaagttaa ggtggtcaca
     4021 gcacaggtca gggagccaag gagctgtggg aaggactatt caaagcttcc ttcctcctct
     4081 tccctgcctt cactggtccg tccggttccc tcactaccac tcctaagtcc atcttcggtg
     4141 atgaggaatg gggccctcct cagggtagag cttaggaaat gaggggaaag caattgtcag
     4201 ataccaagag gaccctgctg tttaaattgc tgagaaagct ctaatccctg ggcatagtgg
     4261 gttttagctt aatgtttgtg tgctgccgca ggcccatcag gaaggaaatg ccactgctct
     4321 gggagcaaat taagcagcca ttcaggtctc atttttttat tttggtggga ttgctttttg
     4381 gggtttatag cctggaaatg tagacgctat gtgtgtataa aatatatata catatttttt
     4441 aatttattaa aatgtggttt tttttcaaga ttatgaaaaa attaaataaa tttgagctat
     4501 agcaatgctt tagtggttaa caacacttac tgctcgtcca gaattcccag gttcagttcc
     4561 cagctcacaa ccatctgtaa ctccaattcc cagggtctgt aggaccctat gccttctcca
     4621 ggcctctgta ggcacaggca caaatggagt gcatatatat gtgtccaggt aaaacactag
     4681 tacacataaa aataaaaaca aataaatctg attttttgat tagataaatt ctcagaagtc
     4741 actctccctg ttattagatg gttttgtgcc ctgggctgat ggttctgtaa tgttgggagt
     4801 gttgatagag actggtggct tggtctttca tgtgtttgcg agtgccctgc tttaaaattc
     4861 agcgggaggg gttggggatt tagctcagtg gtagagcgct tgcctagcag gcacaaggcc
     4921 ctcggttcgg tccccagctc cgggaaaaaa aaaaaaaaaa aaacctgcta aaattcagca
     4981 gaagtaacta ctgagtcaga acggcttctc tctgcagtca gctcataaaa cagcctcctt
     5041 agaacatagt gtaaatccgc ttccaggtta ggaggtgatg tgaaaggatg cttgagagat
     5101 aaatgtcagc agtgcaaagc tggccccctt ctgcttttct tgttagaaag aagtagaccc
     5161 tgggctggtg acatggcttg gccattgaga gtgcttgctg catttccata ggacccaagt
     5221 tccattccca ccttagcgca gctcacactc cagttccagg agatgcagtg ccctcttctg
     5281 gcctccctgg gcatctgcac acacatggca ttcactaaca cagacacatg taaacagtaa
     5341 taataaaaaa tattgataac gaagcagaca aggaggtact tgaaagttat attattgact
     5401 cattcctgaa tttttccaat aactgtcact taaaaacaga gggaactgat ctttccctca
     5461 tatgctgtgg ttcagtcttg ttgggtgatg ctcaatcctg ggcgggtgag cattcccatt
     5521 agtaacagct gccggatact gtcaggcatg gctgcagtga ctagaacgtt cgacccagga
     5581 aaactcccac agttccacag ctgtaaggct gtgtttcagt cttgctgctc tagtatgaaa
     5641 catgacagaa atgtgccaca gtaacaaaac taggaagcat gtttgacttc ctcccacatc
     5701 aaaatcgtcc agtggagctt ctgctttaat agcgcattag aagcagctct tgcacttcct
     5761 taacctacac agccagcatc ctatccagtg actccccgtt ctgaactcat ggaagtgccc
     5821 ccctcaccgc acctcccccc accccatagc cctcttcccg cctcagccgg ggggcactga
     5881 cctcatggta catagacccc aacttccgag tgagacctgt agctccatca taagaatcaa
     5941 cctcccaagc tctccacata gtcccagcct ggagggtagc ttattgccac gtacaaaccc
     6001 atgttcctta ccacctgttc tcgcctcagt tgtaggccat tgaaatttac ttaagtaatg
     6061 attttttatg ctaatatgaa taccagtcat atttttaacc agaagaagaa aagtaaggcc
     6121 tagaaggaag ataatggatt gaaggcattg tcattcccac cctgatagca cttggaagga
     6181 gacatttcct ccccagtccc cactacagga attgtgggtg acttttaagt aactactgga
     6241 ctgcctagga agatattccc agagtccaaa aggaactatg cacatagaga aaatacagtt
     6301 ttctcctgcc taagcaaact ctattagtat tctattagct tatattttta ataactaagc
     6361 ttaaaacata gtttattttg gatattacta gaactttcag caattctaat acctgtcagg
     6421 tactcataga atctatgaaa aaataaaaaa accgtgtgat taggaaacct actgagtcat
     6481 ggcatggcca acaacccttt gtttggctag ctctaagcat tacagattta gtgcatgaaa
     6541 agacaattat attgggttca agaactaaag agtcaatagg tcatctgtga aggtcaacaa
     6601 ataccgaact ggtgtgtttt ttgtccttgg tcaagctggt ggctatagtt aaatgaacca
     6661 ggaagtgtgt catattcccc aggatgctaa tcccagactg actcagcaga ttgaatgcac
     6721 agcacgagta tgtcagttga actaccctag ttcattatca tgcttacttc ctgggccgtg
     6781 gccaggagat gatgacagct acaaagcact gctagtcttt gagattctag gttttttttt
     6841 cctcatcatg gtaatgaggt tcagcgaagc cagtgtctta aatgggcata aattcatgct
     6901 cttctaagag tgggtgggag atagactggg tatgcagctc agatggatga atgcttgctt
     6961 agaatgcctg aagccatggc ttccgtcacc acataaacca ggatggtgga gtgtgtttag
     7021 aatcctacca tttgggaggt ggaggtggga agatcaggag ttcagggtca acctgggcta
     7081 tgtgggaccc tgtcttaccg tgtggaagaa atgcagaaaa aaatgtattg ttctctccct
     7141 gaataatcat gtctgtttac aataaatgat ggcgacagac tatttcaaac aagtctttat
     7201 aatgcaatac ctgttcttcc tctgaaaccc aaataaagag ttttaaaact tt
//
