LOCUS       XM_220750               7293 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ATPase family, AAA domain containing 5
            (Atad5), transcript variant X1, mRNA.
ACCESSION   XM_220750
VERSION     XM_220750.10
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_220750.11.
            
            On Jan 21, 2021 this sequence version replaced XM_220750.9.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7293
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7293
                     /gene="Atad5"
                     /note="ATPase family, AAA domain containing 5; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 14 ESTs, 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     26 samples with support for all annotated introns"
                     /db_xref="GeneID:303348"
                     /db_xref="RGD:1561464"
     CDS             404..5908
                     /gene="Atad5"
                     /codon_start=1
                     /product="ATPase family AAA domain-containing protein 5
                     isoform X1"
                     /protein_id="XP_220750.6"
                     /db_xref="GeneID:303348"
                     /db_xref="RGD:1561464"
                     /translation="MVGVLTMAAAAAPPPVKDCEIEPCRKRRKDDDSSSCETITKYLS
                     PIGKTEDKVFSPSKPNNILHYFRKTSPTTEKLQSTKECKLKPSPPLLVGNSKDCKIPL
                     EVFSNRESKKKRKRVSLSHQLNDVKIENESPVEISNDDSKEDCGLSDFVENSTSVFLY
                     KKHVEALAESIQEDSRNQSNTMTSKKNSKKVNPKQGTTKNDGKTLRKRKHSQGTDQSE
                     SVLVADEISLPGEGGKDSRLTKASLTDENRTAHHVDSRAHATKIADLNESTITVSYEE
                     FLKSHKTAKVEDIPDLAGPACVPSGPSEAIKSGSEGEPESCEPSPHLHLKTVTVLAQV
                     HPTPPKKKRKIPPIFLKQKQLELENSFSDPENEQTVQKRKSNVVVQEGQLELAVLEAW
                     SSEASVPKCSMEERQQFMRAFRQPPSETLRNGLKKPLEKQKDPSEKSVNEGDSNSEKI
                     IENPNIQRVSNQDCSQAHADRGGFPKEKSKRPNKKGKKTRTTAAGNREENMQKEKTAF
                     SLKDNQDQNTLRRSVRQKSEVFKSSALLNSENLVSEDTARDSVKPSLCDRNKSRRGST
                     PTRDMVTHGKAEPGSGLVNVSTPKPTRRSLRGSSTPTTVTLGGTESEDAQDTDPVKAS
                     TPKAARISEKPSLYTAELIIISSDSESPIRMKFTRISTPKKSKKSSKKSERTKEELTS
                     QKNKANNTSKKISKAKQLIERAKAFQVSGSKAEETVVPLRRSSRHQTRLEREKSPETD
                     DSVILIDSNPTSIRQPEKNQKKLQNLNDVLGKKLNKSSKKVPGKMKIAPLFLTKKTKR
                     TAISAFDLDESSQDSSGQTQDCDVQFKAKRDFLMSGLPDLLKRQIAKRAAALDVYNAV
                     STSFQRVVHVQQKDDEYWLWHLKPPSCPLLTEFKELNTKVTDLSKCLVAFGEFSTLNP
                     NPRSNPAVVLMRTRKEFTKEVRNLLLEEIKWSNPEFSLGKYFPLLLKKRIEHQVLCEG
                     HGKQASPQLQPDVSQKETKRKQVETGSQKSKRKKPNEYSVSPEKIKGKSKELDKRISS
                     SCINLDPSKESGTEDMLWTEKYQPQNSNELVGNELAIKKLHSWLKDWKRRAELEERQN
                     LKGKRDEKEEDLSDGTDFKGSSDDEEYRLCNTVLITGPTGVGKTAAVYACAQELGFKI
                     FEVNASSQRSGRQILSQLREATQSHQVDKQGANSQKPCFFSNYNIGKSPKKLNSPGKV
                     ITSPRKLPPLSPKTGGQKRALLPKTLANYFKVSSKSNNNEDVGARPGNDKGVKNSSLE
                     QRQIIQTKSTNANNSNIKDFGAEESNRKNATSLILFEEVDVIFDEDAGFLNAVKTFMA
                     TTKRPVILTTSDPTFSLVFDGCFEEINFNIPSLLNVASYLQVICLVENFRTDFKDFVT
                     LLTANACDIRKSILYLQFWIRSGGGILEERPLSHCRENSRNTLVCSEHESDANINSKN
                     TKRNRVALPRCDTGCAEALFGLKNIACPSQDLLSSLKHKITTKEEWQRLIQLLTEFHM
                     QNVDLLHSNLEFILPLPVNMIPEVRGAYGFPVTTQASAPASMKLLNRKQSEDQPLRKS
                     QKRKQKKMVTLDDSDLFDTSLDFSGELPSLSPAASSSEEDNTSRDRGSNPEIKTQNKG
                     FKPHSLPQPPKTLAEKKCCVLVSHCLNSLSEFMENMSFVDALFTDPGEQNELGKSAFH
                     WTNGKVKSGLCDEFSLENRDGWSPRSSEELKATAEALSFTKCSSTISKALESLNSCKQ
                     LGRDPTTELTFCVSQRSHDVCFRQSAANLYNADKRMAVIKSVFSTPSFLTLGNKQASI
                     IDYLPTLRNICRTEKLKEQEKNKRRFLHYFEGIHLDIPEETITPLAADFP"
ORIGIN      
        1 ggtcgtaggc tccgcccctt gcgtgccgga cggcgcgaaa acccaattga caagaactcc
       61 cgccgaagcc ccactgtttg acctgcgttc ggtgtgcggc ttccagtgcg gcctggggct
      121 cgagctctta gcctggagca tcaggctggg gaggcattgt gtattgtccg gccgcctcct
      181 tggggcctgt gcccgggctt tcccgacatc tctgtctgag cctggctcga ccaccctggg
      241 cccaacctca cactcggctc cggccggtgg tctctaagag acccgaaacg ggctccgcgg
      301 ttcgcagcca gctcccactg gacttgccgc ccctatggcc tccagccagg ttgagccgga
      361 ccgctggagg tcctaggagc tcgggttcta ggtggcaggg atcatggtgg gggtcctgac
      421 catggcggcg gctgcagcac cccctcctgt taaggactgc gagattgagc catgcagaaa
      481 gcggagaaaa gatgatgaca gctcttcctg cgaaacaatt accaaatatt tatcaccaat
      541 agggaagact gaagacaagg ttttctctcc atcgaaaccc aataatattc tacattattt
      601 tagaaagacc tcacccacaa ctgagaagct acaatctaca aaggagtgca agttaaagcc
      661 atctccccca ttgcttgttg gcaacagcaa agactgtaag ataccattgg aagtgttctc
      721 aaatagagaa tctaagaaga aaagaaagag agttagttta tcccatcaac tgaatgatgt
      781 caaaattgag aatgagtctc cagttgaaat tagtaatgat gatagtaagg aggactgtgg
      841 tttaagtgat tttgtggaaa acagtacttc tgttttcctt tacaagaaac atgtggaagc
      901 tcttgcagaa agtattcaag aagacagcag aaaccagtca aatactatga cctccaaaaa
      961 aaactctaag aaagtaaatc ctaaacaagg caccacaaaa aatgatggaa agacattgag
     1021 gaaaaggaag catagccagg ggacggacca gtctgaaagt gtactcgtag cagatgaaat
     1081 aagtctgcca ggggaaggtg gcaaagacag caggctgact aaagcttccc taactgatga
     1141 aaacaggact gcacatcatg tagactccag ggctcatgcg actaaaatag ctgatttaaa
     1201 cgagagcaca attactgttt cctatgagga atttttaaaa agtcacaaga cagctaaagt
     1261 ggaagacata cctgacctgg caggaccagc ctgcgttcct tcggggccca gcgaggctat
     1321 caaaagtggt tctgaaggtg aaccagaaag ctgtgaacca tctccacacc tacaccttaa
     1381 gacagttact gttcttgcac aagttcatcc tactccccct aaaaagaaaa ggaaaatacc
     1441 cccaatcttc ttgaaacaga aacagcttga gctggagaat agtttctctg atccagaaaa
     1501 tgagcagaca gttcagaaaa ggaaatctaa tgttgtggtc caggagggcc aattggaact
     1561 ggctgtgctg gaagcttgga gctctgaggc ttcagtacca aagtgcagca tggaagaaag
     1621 acagcagttc atgagagcat tcaggcagcc accgtcggaa acgctcagaa atggactcaa
     1681 gaaacctttg gagaagcaga aagatccaag tgaaaaatct gtcaatgaag gagatagcaa
     1741 ttctgaaaaa atcatagaaa atcctaatat tcaaagagtt tcaaatcaag actgttcaca
     1801 ggcacacgct gatagaggag gttttcctaa ggagaaaagt aaaaggccaa ataaaaaggg
     1861 taagaaaact cggaccaccg cagctggaaa cagagaagaa aacatgcaaa aggaaaaaac
     1921 agccttttcc ttaaaagata atcaagatca aaatacccta cggaggagtg taagacagaa
     1981 atcagaagtt ttcaaaagca gtgcattact caacagtgaa aatcttgttt ctgaggatac
     2041 ggcacgtgac tctgtaaaac cgtctctgtg tgacagaaat aaatcaagaa gaggcagcac
     2101 accaaccagg gatatggtca cacacggcaa agctgagcct ggaagcgggc tggtgaatgt
     2161 ctccacaccc aaaccaacca ggagatctct gagaggtagc agtacaccta ccacggtcac
     2221 cctgggaggt actgagtctg aggatgccca ggacactgat ccagtgaagg cttccactcc
     2281 aaaagcagcc agaatatcag aaaagcccag cctgtataca gcagaattaa taataatatc
     2341 ctctgattcc gagagcccca ttagaatgaa attcactaga attagcactc caaaaaaatc
     2401 caagaaaagt tctaagaaat ctgaaagaac taaggaagag ctcacttctc agaagaacaa
     2461 ggcaaacaat acttcaaaaa agatatcaaa agcaaaacaa ctgattgaga gagcaaaagc
     2521 attccaggtc agtggatcca aggctgaaga aaccgtggtg cccttgaggc ggtcctctcg
     2581 gcaccagact cgtcttgaaa gagagaaatc accagaaaca gatgactctg taatattaat
     2641 agattcaaat ccaacttcta taagacaacc agagaaaaat cagaagaaac ttcagaattt
     2701 gaatgatgta ctaggaaaaa aacttaacaa gtcttctaaa aaagttcctg gaaaaatgaa
     2761 aattgctcct ttatttctta ccaaaaagac aaaaagaaca gccatttctg cctttgattt
     2821 ggatgaaagc agtcaagatt catccggaca aactcaggat tgtgatgtac aatttaaagc
     2881 aaagcgtgat tttctaatga gtggtttgcc agatttactg aaacgacaga ttgcaaagag
     2941 agctgctgca ttagatgtgt acaatgcagt gagtaccagt ttccagaggg ttgttcatgt
     3001 acaacagaag gatgacgaat attggttatg gcatttgaag ccaccttctt gtcctctgtt
     3061 aactgaattt aaggaattaa atactaaagt aacagatctc tcaaaatgtc ttgttgcttt
     3121 tggtgaattt tcaaccttga atccaaatcc aagaagtaat cctgctgttg tgttgatgag
     3181 gacaaggaag gagtttacca aagaagtaag aaatcttttg ctggaggaaa taaagtggtc
     3241 aaatccagaa ttttctttgg gaaaatattt tcccttgctt cttaaaaaac gaattgagca
     3301 ccaggtactt tgtgagggtc atggtaaaca agcaagtcca caactacagc ctgatgtcag
     3361 tcaaaaagaa accaaaagga aacaagtgga aacaggaagt cagaagtcaa aaagaaaaaa
     3421 accaaatgaa tattcagtga gcccagaaaa gataaagggg aagtcaaaag aacttgacaa
     3481 aagaatcagc tcttcttgta taaatctaga tccttccaaa gagtctggaa ctgaagacat
     3541 gctttggaca gaaaagtacc agcctcagaa ttcgaatgaa cttgtaggca atgagttagc
     3601 tatcaaaaag ttacacagtt ggttgaagga ttggaaaaga agagctgaac tggaagaaag
     3661 acagaatttg aaaggaaaga gagatgaaaa agaggaagac ctgtcggacg gcacggactt
     3721 caaaggcagt tcagatgatg aagagtatcg cctttgcaac actgttctta taacgggacc
     3781 aacaggagtg gggaagaccg ccgccgtgta tgcttgcgct caggagctgg ggtttaagat
     3841 atttgaagtg aatgcctctt cccagcgaag tggcaggcag atcctgtctc agctgaggga
     3901 ggctacccag tcccatcaag tggataaaca aggcgcaaac tcacaaaagc cctgtttctt
     3961 tagtaactac aacattggca agtcaccaaa aaagttaaac tcccctggga aagttatcac
     4021 gtcaccaagg aagcttcctc cactgtcgcc aaagacaggt gggcagaagc gagcacttct
     4081 ccctaaaact ttggcaaatt actttaaagt gtcctccaaa tccaacaata atgaagacgt
     4141 gggagcacgc ccaggaaatg ataaaggagt caaaaattct tctttggaac agaggcaaat
     4201 tattcagact aaatcaacaa atgcaaataa ttcaaatatt aaagattttg gagctgaaga
     4261 atccaacaga aagaacgcaa catcactcat tctctttgag gaggttgatg tcatttttga
     4321 tgaagatgct ggatttttga atgcagtcaa aacattcatg gcaacaacta aacgaccagt
     4381 aattctcact acaagtgatc ccacatttag tttagtgttt gatggctgtt ttgaagaaat
     4441 caatttcaat attccttccc tgctaaacgt tgcgagctat ctacaagtga tctgtttagt
     4501 tgagaacttc agaactgact ttaaagactt tgttaccttg ttgactgcaa atgcttgtga
     4561 catcagaaaa agtatccttt acttacagtt ttggataaga agtggaggtg gaattttaga
     4621 agaaagacca ttatcacatt gtcgagaaaa tagcagaaat acactggttt gttctgaaca
     4681 tgaatctgat gcgaacatta actctaaaaa caccaaaagg aaccgtgtgg ccctccccag
     4741 atgtgacacc ggctgtgcag aggctttgtt tggactcaag aacattgcct gcccatccca
     4801 agacttactt tcatcgttaa agcacaagat cacaaccaag gaagagtggc agagactaat
     4861 tcagcttctc actgaattcc acatgcaaaa tgtagatctg ttacatagta atcttgagtt
     4921 catcctgcca ttgccagtta acatgattcc agaagtaaga ggtgcttatg gcttcccagt
     4981 gactacacag gccagtgccc cagcaagcat gaagctcctt aacaggaagc agtcagaaga
     5041 ccagccattg agaaaatcac agaaaaggaa acagaaaaag atggtgaccc ttgatgacag
     5101 tgacctgttt gacactagct tagacttttc tggtgaacta cctagcttat ctcctgcagc
     5161 ttcctcatct gaagaagaca acacaagcag agacagaggc agcaacccag agataaagac
     5221 acagaacaaa ggtttcaagc ctcactctct acctcagcct cctaagacac tagcagagaa
     5281 gaagtgctgc gtgctcgttt cccactgttt aaactctctc agtgagttca tggagaacat
     5341 gtccttcgta gatgccctgt ttacagatcc aggggaacag aatgaattgg gtaaaagtgc
     5401 cttccactgg acaaacggaa aggttaaaag cggactttgt gatgagttta gtcttgagaa
     5461 cagagatggg tggtctcctc ggagctctga agaattaaaa gcaactgcag aagcactcag
     5521 ctttactaaa tgttcttcta ccatttcaaa agcactggag tccttgaatt catgcaagca
     5581 attaggaaga gacccaacca ctgaactcac tttctgtgtt tcacaaagga gccacgatgt
     5641 atgcttccgc cagtcggcag ctaatctgta caatgctgac aagaggatgg cagtcattaa
     5701 aagtgtgttt tctactcctt ctttcctgac cctgggtaat aaacaagcta gtataattga
     5761 ctacctgcca actcttcgaa acatttgtcg gacagaaaag ctaaaagaac aagagaaaaa
     5821 taaaagaagg tttctgcact attttgaagg aattcatcta gatattcctg aggaaaccat
     5881 aactcctttg gcagctgact tcccttgatg tgtcccgtca ttagtcttgt acagattgtg
     5941 tggtcctgat gacacacttt agagtatggt gactttaaac agcttatctc ttaatgtaaa
     6001 ttttaaaaga cttttgtatt tttgtggttc aagtatttaa aatcaaaatt ctgagttata
     6061 aactgtatat atgattgtgg tatctctctt ggatgttttg ggttattttt gctttattgt
     6121 ctactttctg tatgtgtgaa ctgtttgtag aaggtaattt tcactaatag atttctagag
     6181 ctgtttcagt gctgagctca cctgtcattt cctttttcct gtaatctccc gctactgacc
     6241 agcgtcagag ctgtgccact gtaaatagtc agtctgtaaa gttacacaat gtgaaacagt
     6301 tccgtacagg gtatttttaa actgtcgcag gaagcaaatt atgcctccgc tgtggaaagc
     6361 attgccttga ttccttgtgc cttcttccag aatgttttac catttaatca ttgagtcatt
     6421 ggtgttggca gagtaaagcg ttctgaatcc tagtgttcac aaaccttatc accctgcatg
     6481 gttacagtca tgagcatttt gccaactcaa atcatttgta cattttctgg tacttttata
     6541 ttattatatt ttatttcata aagtaatgac attagtttat ctattttgga caacttgttg
     6601 atggttgaag aaataataaa ggattctacc atagggtttc tacctaacag ttatttccat
     6661 ttaagtatgg ctttttattt ttttggtgct gaggattaaa ctttgtattg taggcaaatg
     6721 tcctgtctta gtgtatacac aggtgttatg ttttagtaat tatttgcagt ggtacatagc
     6781 aaacccaaga cctttgtgca ctctctgagc atgcttaacc acagagctag gaccctcacc
     6841 ctgtttttga ggcaggatct ggtatattgc ttaggctacc cccaaactcc ttccagaatt
     6901 tcataatccc tatctcaagc ttcttaagta cttgggacga caggcatatg ctacacacag
     6961 agcaagtcat cttttaatat tgtttaagta cctgtttttt actttagtag caagatttta
     7021 aaatacacat tttacttaat attattttac agataatcag gtttgtttaa aattccttca
     7081 aaatgtaaat atttgtataa cataatattc aggtacattt tctgatgaat tgtactttta
     7141 attcagaagg taaggatcct agttttgtac ttttttaaaa tatgggtgca tacctgctta
     7201 caaatgtata tgaagatgtg ttcttacctc ttgctcaacc cgccttttct tgtattaatt
     7261 agtaaaccat tctaattaaa agttaaagct aaa
//
