LOCUS       XM_039113113            6415 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ATPase family, AAA domain containing
            2B (Atad2b), transcript variant X1, mRNA.
ACCESSION   XM_039113113
VERSION     XM_039113113.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039113113.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6415
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6415
                     /gene="Atad2b"
                     /note="ATPase family, AAA domain containing 2B; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 1 long SRA read, 10 Proteins, and 100% coverage
                     of the annotated genomic feature by RNAseq alignments,
                     including 17 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:500625"
                     /db_xref="RGD:1566199"
     CDS             422..5089
                     /gene="Atad2b"
                     /codon_start=1
                     /product="ATPase family AAA domain-containing protein 2B
                     isoform X1"
                     /protein_id="XP_038969041.1"
                     /db_xref="GeneID:500625"
                     /db_xref="RGD:1566199"
                     /translation="MVNTRKSSLRLLGSKSPGPGPGPGAGVEPGATGGSSHFISSRTR
                     SSKTRAASCPAAKAGGSGGALDEARKAEVDGSLSDSHVSPPAKRTLKQPDSVCKDKSK
                     SRSTGQREEWNIPSGQARLTSQPGATLPNGHSSLSLRSHPLRGEKKGDGDLSCINGDM
                     EVRKSCRSRKNRFESVNQSLLFDQLVNSTAEAVLQEMDNINIRRNRRSGEVERLRMWT
                     DTEFENMDMYSRVKRRRKSLRRNSYGIQNHHEVSTEGEEEESQEEDGDIEVEEAEGEE
                     NDRPYNLRQRKTVDRYQAPPIVPAHQKKRENTLFDIHRSPARRSHIRRKKHAIHSSDT
                     TSSDEERFERRKSKSMARARNRCLPMNFRAEDLASGILRERVKVGASLADVDPMNIDK
                     SVRFDSIGGLSHHIHALKEMVVFPLLYPEIFEKFKIQPPRGCLFYGPPGTGKTLVARA
                     LANECSQGDKKVAFFMRKGADCLSKWVGESERQLRLLFDQAYLMRPSIIFFDEIDGLA
                     PVRSSRQDQIHSSIVSTLLALMDGLDNRGEIVVIGATNRLDSIDPALRRPGRFDREFL
                     FNLPDQRARKHILQIHTRDWNPKLSDAFLGELAEKCVGYCGADIKALCTEAALIALRR
                     RYPQIYASSHKLQLDVSSIVLSAQDFYRAMQNIVPASQRAVMSSGQALSPIIRPLLER
                     SFNNILAVLQKIFPHAEISQSDKKEDVENLILDDSEDENALSIFEMSCHSASPKKSSP
                     AAVTKPYLHFTMSPYHQPTSYRPRLLLSGERGSGQTSHLAPALLHTLERFSVHRLDLP
                     ALYSVSAKTPEESCAQIFREARRTVPSIVYMPHIGDWWDAVSETVRATFLTLLQDIPS
                     FSPIFLLSTSETMYSELPEEVKCIFRIQYEEVLYVQRPIEEDRRKFFQELILHQASMA
                     PPRRKHTALRAMEVLPLALPCPPRQLSESEKSRMEDQEENTLRELRLFLRDVTKRLAT
                     DKRFNIFSKPVDIEEVSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLQDIDLICSNA
                     LEYNPDKDPGDKIIRHRACTLKDTAHAIIAAELDPEFNKLCEEIKEARIKRGLSVTAE
                     QVTPHGAGARKSETRVEEAFRHKQRNPMDAWHNSANKCAFRVRRKSRRRSQWGKGIIK
                     KRKVNNLKKDEEDTKFTDYDHTEDRKLLENGEFEVSTDCHEENGEETGDLSMTNDESS
                     CDIMDLDQSQRLNSGAGTKENFASTEEESSNESLLVHSSSSLNPEQTSKKEPFLKGTC
                     LNGEASTDSFEGIPILECQNGRVLEAAPLPGAGEKSSSEQKTALEEQLKDKPETANER
                     HGDDPEKLEVLGYSSNEIDPGPDGDGKDAELDKEGACKVKKYRKLILEQAKTTNLELV
                     PEEPSEPVPPLVVDHERLQKLLDLLVDKSNNLTVDQLERLYSLLSQCVYRHRKDYDKS
                     QLVEYPQRSEEGTEFLELRFQMTVSRHMPLKEQVLLAAELPIYHLSLSYPTPSIVCMC
                     VFETGFLCVALAVPNQVGFELRDLPVSSSQVLGLKPCATTVGLSLFSYIRKGHVPMGN
                     IYS"
ORIGIN      
        1 gggcctgcgg aggctgcggc gagggaaggg ctgcgcgtcc ttgcagcgcc tcgcagcggc
       61 cgcgtctaga agcggccttg tcggccctgc ggcgccagag ccctgacgca cggagctcga
      121 gagagagaac gagagagaaa ggggcagaca tggcggctcc gctcagctcc cgctgaggac
      181 ggctgagcag gcgcaggggc tgtgcggccg gcttgcaacc tcgcttccgc ctcccgctcc
      241 ctgcctcctc gcgccgccgc tggcttctgc tccgctctag cctgtcgggc ctgcgtcccg
      301 gaaaggcaac gcgagccggc ccggcaaggc tccgctggcc cctgcccgcc ggcgggccgg
      361 ccttcctcgc ctctcccggg agcggcgggc gcggcgtgga cccggtcccc ctggctggac
      421 catggtgaac acccggaaga gctctctgcg ccttctcggg tccaagtctc ctgggcccgg
      481 gcctgggcct ggggccggag tggagccggg ggcgactggc ggcagcagcc atttcatctc
      541 ctctcggacc cgctcctcca agacgcgcgc ggccagttgc ccggcagcca aggccggggg
      601 aagcggcggc gctctggacg aggcccggaa agctgaagtt gatggaagtt taagtgatag
      661 ccacgtgtct cctccagcca agcgcacttt gaaacagccg gattctgttt gcaaagacaa
      721 atcaaagtca cgaagtactg gtcagcgaga ggaatggaac ataccatctg gtcaggccag
      781 gttaacttct cagcctggtg ctacattacc aaacggacat agtagcttgt cacttcgaag
      841 ccaccccctt cgaggggaaa agaaaggaga tggcgacctt tcatgtataa atggtgacat
      901 ggaagtcaga aaaagctgtc ggtccaggaa aaacagattt gaaagtgtga atcagagttt
      961 attatttgat caactagtaa atagtactgc tgaagctgtg ttacaagaaa tggataatat
     1021 taacattcga cgaaatcgtc gatcaggcga agtagagcgg cttcgaatgt ggacagatac
     1081 agaatttgaa aatatggata tgtattcaag ggttaaaaga cgaagaaaat cactgagaag
     1141 aaatagttat gggatacaga atcatcatga agtttctact gagggcgagg aagaagaatc
     1201 tcaagaggag gatggagaca tagaagttga agaggcagaa ggagaagaaa atgatagacc
     1261 atataatttg agacaaagaa aaacagtgga tcgatatcaa gcaccgccaa tagtaccggc
     1321 tcatcaaaaa aagagggaaa atacactatt tgatattcac aggtctccag caagaagaag
     1381 ccatatcagg aggaagaagc acgccattca cagtagtgac acaacttctt ctgatgaaga
     1441 gcgctttgag agaaggaagt caaaaagcat ggcaagagca agaaacaggt gtttgcctat
     1501 gaacttcaga gcagaagatt tagcgagcgg cattctccga gaacgggtga aagtgggtgc
     1561 aagtttggct gatgttgatc cgatgaacat tgataaatca gtgcggtttg atagcatagg
     1621 tggattgagc catcacatac acgctttgaa ggagatggta gtttttccac ttttatatcc
     1681 agaaattttt gaaaaattta aaattcagcc tccaaggggc tgtttgtttt atggtcctcc
     1741 tggcacaggt aaaaccttag ttgccagagc attagctaac gaatgcagtc aaggagacaa
     1801 aaaggtagca tttttcatgc gaaaaggagc agactgtttg agcaagtggg tcggagagtc
     1861 ggaaaggcag ctcaggcttc tctttgatca ggcatatttg atgaggccct ctataatatt
     1921 ttttgatgaa atagatggct tagctcctgt tcgctctagt agacaagatc agatccacag
     1981 ctctatagtg tcaaccctcc ttgctcttat ggatggatta gataatagag gtgaaattgt
     2041 tgttattggt gctacaaaca gacttgactc tattgatcct gcactcagga gacctggtcg
     2101 ttttgacaga gaatttcttt tcaacctgcc tgatcaaagg gccagaaagc acatcttgca
     2161 gatccacacc agggattgga atccaaaact gtcggatgca tttttaggag agttggcaga
     2221 aaaatgtgtt ggctactgtg gagctgacat caaggccctg tgtactgaag ctgccctgat
     2281 tgcccttcgc aggcgctacc ctcagatcta tgctagcagt cataaactgc agctggacgt
     2341 ttcctcaata gtgctcagtg cccaagactt ctaccgtgca atgcagaaca ttgtgcctgc
     2401 ttcccaacgt gctgtgatgt cctcaggaca ggcgctgtcc cccattataa ggccattgct
     2461 agaaagaagt ttcaacaaca tcttagcagt cctgcaaaaa atatttcctc atgcagaaat
     2521 aagccagagt gacaagaaag aagatgtaga aaatctgatt ttagatgata gtgaagatga
     2581 gaatgcttta tcaatttttg agatgagttg tcactcggca tcaccaaaga agtcatcgcc
     2641 agctgctgtc actaaacctt atctccactt tacaatgtca ccatatcatc agccaacctc
     2701 ttataggcct cggttgttgc tatctgggga acgaggttca ggacagactt cgcaccttgc
     2761 tccagcactt ttgcatacac tagaaagatt ctctgtgcat cggctcgacc tcccagcact
     2821 ttactcagtc agtgccaaaa cacctgaaga atcatgtgca cagatatttc gagaagctcg
     2881 aagaacagta ccgagtattg tttacatgcc tcacattggt gactggtggg acgctgtcag
     2941 cgagaccgtg agagcaacgt ttctgacctt gctgcaggat ataccatcct tttcacctat
     3001 atttttattg tctacctctg aaaccatgta cagtgagctg cctgaagagg ttaaatgtat
     3061 ctttagaata cagtatgaag aggtattata tgttcaaagg cctattgaag aagatcgaag
     3121 aaaatttttc caagaactta ttctccatca ggcatcaatg gcaccaccac gaaggaaaca
     3181 tactgctctt cgtgctatgg aagtgcttcc tctcgcacta ccatgtcctc ctcgtcagtt
     3241 atcagagtca gaaaaaagtc ggatggaaga ccaggaggaa aacacattac gagaactgcg
     3301 gttgttcctc agggatgtta ccaagaggct ggccacagat aaacgcttta acatcttcag
     3361 caaaccggtg gatattgaag aggtttcaga ttatcttgaa gtaatcaaag aaccaatgga
     3421 tttatcgaca gtaataacta aaattgataa gcataattat ctaacggcta aagatttcct
     3481 gcaagatatt gacctcatct gtagcaatgc tttagaatac aatccagaca aggaccctgg
     3541 agataaaatt atcaggcaca gagcttgtac cctgaaggac actgcacacg ccatcattgc
     3601 agctgaactg gatccagagt ttaataagct ctgtgaagaa attaaggaag caagaataaa
     3661 gagaggctta tcagtgacag cagaacaagt aactcctcat ggcgctggtg cccgcaagtc
     3721 ggagacgaga gtggaagagg catttcggca caaacagaga aacccaatgg atgcttggca
     3781 caactctgca aataagtgtg cgtttcgagt tcggagaaaa tcaaggcgac gatcacagtg
     3841 gggtaaagga attattaaga aaaggaaagt gaataattta aagaaagatg aggaagacac
     3901 caagtttaca gactatgacc atacagagga caggaagttg ctggagaatg gagaatttga
     3961 ggtaagcact gactgccatg aggaaaatgg agaagaaact ggagacttat ctatgaccaa
     4021 cgatgaatct tcatgtgaca tcatggattt ggaccagagt cagaggctga atagtggagc
     4081 gggcaccaaa gagaactttg catccactga agaggagagt tcaaatgaat ctctgctcgt
     4141 ccatagcagc agttccctca accctgagca gacatctaag aaggaaccct tcctgaaagg
     4201 cacctgccta aatggcgagg cctccactga cagctttgaa ggcatcccca ttctggagtg
     4261 tcagaatggc agagttcttg aagcagctcc tctgcctggt gctggggaaa aatctagttc
     4321 tgaacagaag actgctctgg aggaacagct aaaagacaag cccgaaactg cgaatgaacg
     4381 tcatggagat gatcctgaga aactagaagt gctgggatat agcagtaatg agatcgatcc
     4441 tggccctgat ggagatggga aggatgcaga gctggataaa gaaggtgctt gtaaagtaaa
     4501 aaaatatcgc aaattaattt tagagcaggc aaaaacaaca aacctcgaac tggttccaga
     4561 agagccatcg gagcctgtgc cacctttggt agttgatcac gagagactgc agaaattgct
     4621 tgatttgttg gtagataaaa gcaacaacct gacagtcgat cagcttgaga gattatactc
     4681 cctcctcagt cagtgcgtct accgccatcg taaagactat gacaaatctc agcttgtgga
     4741 gtatccacag aggtcagaag aaggcactga attcctagaa ctgaggttcc agatgactgt
     4801 gagccgtcat atgcctctga aagagcaagt acttttagct gctgagctgc ctatctacca
     4861 cctcagcttg tcatacccca caccctccat tgtgtgtatg tgtgtgtttg agacaggatt
     4921 tctctgtgta gccttggctg tcccgaacca ggttggcttt gaactcagag atctgcctgt
     4981 ctcttcctcc caagtcctgg gattaaagcc atgtgccacc actgtcggac tcagcttgtt
     5041 ttcttatata cgcaagggcc atgtacccat gggtaacatc tactcctagg tcccacatca
     5101 atcatgcttc aagaatatgt cccacagaca tgctcacaag acgatctgat gtaggtccgt
     5161 ttctcaagtc agctttcctc ctcccagata tgtctagttg tcaaggtgac aagtcatcac
     5221 cacaatgggg aaacagagtc agaatcagga caagagtgtc tgtctcactg cacttatgca
     5281 aaaggttatt agaaattttg gccaatacaa ttagcaagaa ctaaaagaca gtaagaaaga
     5341 agaaaaatta tccctatatg ttaatgatat aattcttagt cactgtttta ttgctgtgaa
     5401 gagacattaa gagcacagca actcttataa aggaaagcat ttaattgggg ctagtttacg
     5461 gtttcagaag cttgatccat tatcatggca ggcagcacgg tggcatgtat tgccggcatg
     5521 gtgctggaga ggtagttaag tgttgcatcc tgatctgctg acagagagaa ctggacctag
     5581 catgggcttt tgaaacctca gagccagccc ctgatggcac actccctgcc acaaagatgc
     5641 ctcctaattt ttctaatctt tgaagagttt tactctggtg actaaacatt caaatatgag
     5701 cctatgggag ctgttattca aactaccagg ggttctatac atagaaaaat ctaatgtcta
     5761 tgtcagaaga ttgttagaag tgtacagaaa gatgtaaata tacaaaagaa cactcagaat
     5821 cattagtcct caggcaagtg taaatcaaaa caaaggaggt accatttcac actgttacat
     5881 tgtgtccatg gtgcatctga agggagggga gagcaaacac cagtgggctt ttgaaacagc
     5941 aaaatcttct tttcccaaca catcagcagt ccctgatcca tcagggccac cagacaagga
     6001 ctcagggctc ttctggcagg ttcaagaagg gtctgaagca gggcttataa gtataaaacc
     6061 cacaagcctc tgggccaagt tacagttaca gtttttatta atgtcagccg acatcgagtg
     6121 gtgtttttgc ccaaccagtc agatttattt gttctttctg ttgttaggaa caggtactaa
     6181 atttggggtt aactattgtt gtttagagag gggattagca acaggtatgt tttggggaac
     6241 tagagaggga gttagtcagc ttaggtaaat tggagtctga agtcaaaatg gtagaactta
     6301 gaccagtcgc taacattaag ctaaatggaa agaaacttga agcaatccct ctaaaatcag
     6361 ggattagaca aggctgccca ctctctccct acttattcaa tatagttctt gaagt
//
