LOCUS       NM_001271363            4229 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus astrotactin 2 (Astn2), mRNA.
ACCESSION   NM_001271363 XM_002729488
VERSION     NM_001271363.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4229)
  AUTHORS   Chang,H., Cahill,H., Smallwood,P.M., Wang,Y. and Nathans,J.
  TITLE     Identification of Astrotactin2 as a Genetic Modifier That Regulates
            the Global Orientation of Mammalian Hair Follicles
  JOURNAL   PLoS Genet 11 (9), e1005532 (2015)
   PUBMED   26418459
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4229)
  AUTHORS   Wilson,P.M., Fryer,R.H., Fang,Y. and Hatten,M.E.
  TITLE     Astn2, a novel member of the astrotactin gene family, regulates the
            trafficking of ASTN1 during glial-guided neuronal migration
  JOURNAL   J Neurosci 30 (25), 8529-8540 (2010)
   PUBMED   20573900
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000005.1.
            
            On Sep 18, 2012 this sequence version replaced XM_002729488.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760386
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-484               JAXUCZ010000005.1  84758803-84759286   c
            485-672             JAXUCZ010000005.1  84632612-84632799   c
            673-1057            JAXUCZ010000005.1  84554978-84555362   c
            1058-1213           JAXUCZ010000005.1  84493848-84494003   c
            1214-1321           JAXUCZ010000005.1  84445960-84446067   c
            1322-1468           JAXUCZ010000005.1  84379403-84379549   c
            1469-1636           JAXUCZ010000005.1  84342149-84342316   c
            1637-1721           JAXUCZ010000005.1  84314288-84314372   c
            1722-1796           JAXUCZ010000005.1  84313110-84313184   c
            1797-1934           JAXUCZ010000005.1  84312230-84312367   c
            1935-2085           JAXUCZ010000005.1  84205439-84205589   c
            2086-2252           JAXUCZ010000005.1  84158716-84158882   c
            2253-2441           JAXUCZ010000005.1  84133703-84133891   c
            2442-2566           JAXUCZ010000005.1  84063533-84063657   c
            2567-2671           JAXUCZ010000005.1  84060055-84060159   c
            2672-2851           JAXUCZ010000005.1  84056682-84056861   c
            2852-3117           JAXUCZ010000005.1  83996341-83996606   c
            3118-3251           JAXUCZ010000005.1  83956993-83957126   c
            3252-3400           JAXUCZ010000005.1  83955253-83955401   c
            3401-3542           JAXUCZ010000005.1  83825910-83826051   c
            3543-3643           JAXUCZ010000005.1  83788948-83789048   c
            3644-3827           JAXUCZ010000005.1  83787187-83787370   c
            3828-4229           JAXUCZ010000005.1  83773633-83774034   c
FEATURES             Location/Qualifiers
     source          1..4229
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q24"
     gene            1..4229
                     /gene="Astn2"
                     /note="astrotactin 2"
                     /db_xref="GeneID:100361323"
                     /db_xref="RGD:2320342"
     CDS             1..4065
                     /gene="Astn2"
                     /codon_start=1
                     /product="astrotactin-2"
                     /protein_id="NP_001258292.1"
                     /db_xref="GeneID:100361323"
                     /db_xref="RGD:2320342"
                     /translation="MAAAGARRSPGPGLGLRGRPRLRFHPGPPPPPPLPLLLLFLLLL
                     PPPPLLAGATAAAASREPDSPCRLKTVTVSTLPALRESDIGWSGARAGAAAGAGAGTG
                     AGAGASAAAAAAAAASPGSAGSAGTAAESRLLLFVRNELPGRIAVQDDLDNTELPFFT
                     LEMSGTAADISLVHWRQQWLENGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQLHI
                     LHISVMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGP
                     QARESFRSTRLQAHNSVIGVPIRETPILDDYDYEEEEDPPRRANHVSREDEFDSQMTH
                     ALDSLGRPGEEKVEFEKKAAAEATQETVESLMQKFKESFRANTPVEIGQLQPASRSST
                     SAGKRKRRNKSRGGISFGRTKGTSGSEADDETQLTFYTEQYRSRRRSKGLLKSPVNKT
                     ALTLIAVSSCILAMVCGNQMSCPLTVKVTLHVPEHFIADGSSFVVSEGSYLDISDWLN
                     PAKLSLYYQINATSPWVRDLCGQRTTDACEQLCDPETGECSCHEGYAPDPVHRHLCIR
                     SDWGQSEGPWPYTTLERGYDLVTGEQAPEKILRSTFSLGQGLWLPVSKSFVVPPVELS
                     INPLASCKTDVLVTEDPADVREEAMLSTYFETINDLLSSFGPVRDCSRNNGGCTRNFK
                     CVSDRQVDSSGCVCPEELKPMKDGSGCYDHSKGIDCSDGFNGGCEQLCLQQTMPLPYD
                     ATSSTIFMFCGCVEEYKLAPDGKSCLMLSDVCDGPKCLKSDSKFNDTLFGEMLHGYNN
                     RTQHVNQGQVFQMTFRENNFIKDFPQLADGLLVIPLPVEEQCRGVLSEPLPDLQLLTG
                     DIRYDEAMGYPMVQQWRVRSNLYRVKLSTITLSAGFTNVLKILTKESSRDELLSFIQH
                     YGSHYIAEALYGSELTCIIHFPSKKVQQQLWLQYQKETTELGSKKELKSMPFITYLSG
                     LLTAQMLSDDQLISGVEIRCEEKGRCPSTCHLCRRPGKEQLSPTPVLLEINRVVPLYT
                     LIQDNGTKEAFKNALMSSYWCSGKGDVIDDWCRCDLSAFDASGLPNCSPLPQPVLRLS
                     PTVEPSSTVVSLEWIDVQPAIGTKVSDYILQHKKVDEYTDTDLYTGEFLSFADDLLSG
                     LGTSCVAAGRSHGEVPEVSIYSVIFKCLEPDGLYKFTLYAVDTRGRHSELSTVTLRTA
                     CPLVDDNKAEEIADKIYNLYNGYTSGKEQQTAYNTLMEVSASMLFRVQHHYNSHYEKF
                     GDFVWRSEDELGPRKAHLILRRLERVSSHCSSLLRSAYIQSRVDTIPYLFCRSEEVRP
                     AGMVWYSILKDTKITCEEKMVSMARNTYGETKGR"
     exon            1..484
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            485..672
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            673..1057
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            1058..1213
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            1214..1321
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            1322..1468
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            1469..1636
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            1637..1721
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            1722..1796
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            1797..1934
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            1935..2085
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            2086..2252
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            2253..2441
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            2442..2566
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            2567..2671
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            2672..2851
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            2852..3117
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            3118..3251
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            3252..3400
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            3401..3542
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            3543..3643
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            3644..3827
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
     exon            3828..4229
                     /gene="Astn2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggctgccg ccggcgcccg gcgcagcccg ggccccggct tggggcttcg ggggcggccg
       61 aggctccgct tccacccggg gccgccgccg ccaccgccac tgccgctgct gttgctgttt
      121 ctgctcttgc tgccgccgcc gccgttgctg gccggcgcca ccgccgccgc cgcctcgcgg
      181 gagcccgaca gcccatgccg gctcaagact gtcacggtat ccacgctgcc cgctctgcgg
      241 gaaagcgaca tcggctggag cggtgcccgc gccggggccg cggccggggc tggggccggg
      301 accggagccg gggccggagc ttctgctgct gccgccgctg ctgccgccgc gtccccgggc
      361 tccgcgggtt cagccggtac agccgcggag tctcgtctcc tgctctttgt gcgtaacgag
      421 ctccctgggc gcatcgcggt acaagatgac ctggacaaca ccgagctgcc cttcttcacc
      481 ctggagatgt ctggcacagc agcggacatt tcgttggttc actggagaca gcagtggctg
      541 gagaatggca cactgtactt ccatgtttcc atgagcagct ctgggcagct ggcccaggcc
      601 actgctccca cactgcagga gccctcagaa atcgttgaag aacagctgca tatcctccac
      661 atctctgtga tgggtggact cattgcactg ctccttttgc tcctggtgtt cacagtggca
      721 ttgtatgccc aacggcgctg gcagaagcgc aggcgcatcc cacagaagag cgcaagcaca
      781 gaagccactc atgagattca ctacatccca tctgtgctgc tcggtcctca ggccagggag
      841 agcttccgct ccaccagact acaggcacac aactcagtca tcggtgtgcc tatccgggaa
      901 acccccatcc tagatgacta tgactatgaa gaggaagagg acccacccag gcgggccaac
      961 catgtctccc gtgaggatga gtttgatagc cagatgaccc atgccctgga cagcttggga
     1021 aggccaggag aagagaaagt ggaatttgag aagaaagcag cagctgaggc gacacaggag
     1081 acagtggagt ccctgatgca gaagttcaag gagagtttcc gagctaacac acctgtggag
     1141 atcggtcaat tgcagccagc ctcgcgcagc agcacctctg cagggaagag gaaacggagg
     1201 aacaagtctc gagggggaat cagttttggg agaaccaagg gaacatcagg ctcagaagca
     1261 gatgacgaaa cacagctgac gttctacaca gagcagtacc gcagtcgccg ccgcagcaaa
     1321 ggtttactga aaagccctgt gaacaagaca gccttaacac tgattgctgt cagctcctgc
     1381 attttggcca tggtgtgtgg caaccagatg tcctgtccac ttactgtgaa ggtgactttg
     1441 catgtgccgg agcacttcat tgcagatgga agcagctttg tggtgagtga aggaagctac
     1501 ctggatatct ctgactggct aaaccctgcc aagctgtcct tgtactacca gatcaatgcc
     1561 acctcaccat gggtgagaga cctctgtgga cagaggacga cagatgcctg tgaacagctt
     1621 tgtgacccag aaactgggga gtgcagttgt cacgaaggtt acgcccctga cccagtccac
     1681 agacatctat gtatccgaag tgactggggt caaagtgaag gaccttggcc ttacacaaca
     1741 ctggagaggg gttatgatct ggtgacagga gagcaagccc ctgaaaagat tctcaggtct
     1801 actttcagct tgggccaagg cctctggctt ccggtcagca aaagcttcgt ggttccaccg
     1861 gtggagctgt ccatcaaccc cctggcaagt tgcaagactg atgtactcgt cacagaagac
     1921 cctgcagatg tcagggaaga agcaatgctg tccacgtact ttgagaccat caatgacctg
     1981 ctctcctcct ttggtccagt ccgtgactgc tcaaggaaca atgggggctg cacccgcaac
     2041 ttcaagtgtg tgtctgaccg ccaggtggac tcctcgggat gtgtgtgtcc tgaggaactg
     2101 aagcccatga aggatggttc cggctgctat gatcactcca agggcattga ctgctctgat
     2161 ggctttaatg gagggtgtga gcagctttgc ctacaacaaa caatgccttt gccctatgat
     2221 gccacctcca gcaccatctt catgttctgc ggctgtgtgg aggagtacaa gctggctcct
     2281 gatgggaaat cctgtctaat gctctcggat gtctgtgacg gccccaagtg cctcaaatct
     2341 gactccaaat tcaatgatac cctctttgga gagatgctac atggttacaa caaccggaca
     2401 caacatgtaa accaaggcca agtcttccaa atgacattca gggagaacaa cttcatcaag
     2461 gactttcccc agctggcgga tggactgttg gtgatcccgc taccagtgga agagcaatgc
     2521 cgaggggttc tctctgagcc cctcccagac cttcagcttc tcacgggaga catcaggtat
     2581 gacgaggcca tgggttaccc catggtgcag cagtggcgtg tccggagcaa cctctatcgt
     2641 gtgaagctga gtaccatcac cctctcagca ggcttcacga atgtcctaaa gatcctgacc
     2701 aaagagagca gtcgggatga gctgctctcc ttcatccagc actatggctc ccactacatt
     2761 gcagaggctc tgtatggttc tgaactcact tgcatcatcc attttcccag caagaaggtc
     2821 cagcagcagc tatggctcca gtatcagaaa gagaccacgg agctgggcag caagaaggag
     2881 ctcaagtcca tgcccttcat cacctacctc tctggtctac tgacagccca gatgctatca
     2941 gatgaccaac tcatctcagg tgtggagatt cgatgtgagg aaaagggccg ctgtccatct
     3001 acctgtcacc tttgccgccg gccaggcaaa gaacagctga gccccacacc agtgctgctg
     3061 gagattaacc gtgtggtgcc actttacacc ctcatccaag acaatggcac aaaggaggcc
     3121 ttcaagaatg cactgatgag ttcttactgg tgttctggta aaggagatgt gatcgatgac
     3181 tggtgcaggt gtgacctcag tgccttcgat gccagtggac ttcccaattg tagccccctt
     3241 ccacagccgg tgttacgact ttctccaaca gtggaacctt ccagcactgt ggtttccctg
     3301 gagtggatag atgttcagcc agccattgga accaaagttt ctgactatat cctgcagcac
     3361 aagaaagtgg atgaatacac agacactgac ctctacacag gagaattcct gagttttgct
     3421 gatgacttac tctctggcct gggcacatct tgtgtagctg ctggtcgaag ccacggagag
     3481 gtcccggaag tcagtatcta ctcggtgatc ttcaagtgcc tggagccaga tggcctttac
     3541 aagttcactc tgtatgccgt ggatactcga gggaggcact cagagctcag cacagtgact
     3601 ctaagaacag cttgtccact ggtagatgac aacaaagcag aagagatagc tgacaagatt
     3661 tacaatctat acaatggtta caccagtggc aaggaacagc agactgctta caacacactg
     3721 atggaagtct ctgcctccat gctcttccga gtccagcacc actacaactc tcactatgaa
     3781 aagtttggtg atttcgtctg gaggagtgag gatgagctgg gaccgaggaa ggctcatttg
     3841 attctgcggc ggctggagag ggtcagcagc cattgttcta gtctcttgag aagcgcctac
     3901 atccagagtc gtgtggatac cataccctat ctcttctgcc gcagtgagga ggtccggcct
     3961 gcaggaatgg tgtggtacag catcctcaaa gacaccaaaa tcacatgtga ggagaagatg
     4021 gtgtccatgg cccgaaacac gtatggggaa accaaaggcc ggtgagggag ggtactaccc
     4081 tccttgagca cagagacgct ctatggggga gcacgacttt catggatcct ggggcctggg
     4141 tgggctgggg gacagctgag gggcctggca catgacactt gccagcaagg ccaaagtaaa
     4201 ctgtttctcc gtggacagac aacagagaa
//
