LOCUS       NM_001040156            2424 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus asteroid homolog 1 (Aste1), mRNA.
ACCESSION   NM_001040156 XM_343465
VERSION     NM_001040156.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2424)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
REFERENCE   2  (bases 1 to 2424)
  AUTHORS   Bonaldo,M.F., Lennon,G. and Soares,M.B.
  TITLE     Normalization and subtraction: two approaches to facilitate gene
            discovery
  JOURNAL   Genome Res 6 (9), 791-806 (1996)
   PUBMED   8889548
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1 and BQ193960.1.
            
            On Dec 24, 2009 this sequence version replaced NM_001040156.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript was available
            for the full length of the gene. The extent of this transcript is
            supported by transcript alignments and orthologous data.
            
            ##Evidence-Data-START##
            CDS exon combination :: SRR26360172.2065132.1,
                                    SRR26360190.1181934.1 [ECO:0000331]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-246               JAXUCZ010000008.1  114905349-114905594
            247-1560            JAXUCZ010000008.1  114906978-114908291
            1561-1771           JAXUCZ010000008.1  114911869-114912079
            1772-1967           JAXUCZ010000008.1  114913698-114913893
            1968-2424           BQ193960.1         1-457               c
FEATURES             Location/Qualifiers
     source          1..2424
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q32"
     gene            1..2424
                     /gene="Aste1"
                     /gene_synonym="RGD1304643"
                     /note="asteroid homolog 1"
                     /db_xref="GeneID:363130"
                     /db_xref="RGD:1304643"
     exon            1..246
                     /gene="Aste1"
                     /gene_synonym="RGD1304643"
                     /inference="alignment:Splign:2.1.0"
     exon            247..1560
                     /gene="Aste1"
                     /gene_synonym="RGD1304643"
                     /inference="alignment:Splign:2.1.0"
     CDS             265..2283
                     /gene="Aste1"
                     /gene_synonym="RGD1304643"
                     /codon_start=1
                     /product="protein asteroid homolog 1"
                     /protein_id="NP_001035246.2"
                     /db_xref="GeneID:363130"
                     /db_xref="RGD:1304643"
                     /translation="MGIRGLMSFVEDYSNEFFVDLKLRDTKIIIDGYSLFHRLCFNSN
                     LELRYGGDYDSFADVVQKFFESLFACHICPYVVLDGGCDITDKKLTTLKDRAREKIQA
                     AHSLSVGGGGNVCPLLIREVFIQVLIRLKVCFVQSFSEADRDIMTLANHWNCPVLSSD
                     SDFCIFDLKSGFCPLNSFQWRNLDTIKDTQDYYIPAKSFSLDAFCHYFNNMNKALLPL
                     FAVLCGNDHVNLPIMETFISKVRLPFSSKGRRYHRVLGLLNWLSNFDDPTEALDNVLK
                     SLPKKSRETVRELLCCSMEEYQQSQVKLQDFFQYGTYVCTDALNLGLPGWVLAALAKA
                     QLPPFISDALVLRRTFLHTQVENMQRPNAHRVSQPIRQIIYGLLLNAPSHPEDKSPNT
                     LPSQLLAFNEVERIKTNIKTSTVYVKQLLKDHCDLSKLAELPLSRRQMLLLEALKVKQ
                     VVLESIPTSLKLPIAVTCYWLQSTEAKAKLHHLQALLLGMLREPLHVIINSPDSEDPR
                     RGGAKMLYEELQQVKAAMRPGPRLDLDTAHVFCQWQSCLQMGLYLNQLLSTPLPEPNL
                     TWLYNGSLVHRLCQQLLASCSAESLLSICPEARQLYEHLFSATRSYAPAELFLPKATS
                     KSKKRRQKKKIASLGTTSDTKHWYDRSNRFSLLVLESSEEHVENAELE"
     exon            1561..1771
                     /gene="Aste1"
                     /gene_synonym="RGD1304643"
                     /inference="alignment:Splign:2.1.0"
     exon            1772..1967
                     /gene="Aste1"
                     /gene_synonym="RGD1304643"
                     /inference="alignment:Splign:2.1.0"
     exon            1968..2412
                     /gene="Aste1"
                     /gene_synonym="RGD1304643"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caagctacca ccacccgcta ctaccacccg gcacgaaagt actttcccct ccaggaagag
       61 ccctctgctt ctccgagcca ggcttcccag tgacgtcgtt tctggcactt cctgtttccg
      121 ctcgaggtct tccacgcctc tgcggatctg ccgtttctcc ccggctccta cctgctgctg
      181 gggaaataag ccggacgccc ggaggaagca gcagcaggtg ggtccggagg gcaggggcag
      241 cttggggggg ttctgtcagt caccatgggt atccggggac ttatgagttt tgtggaagat
      301 tatagtaatg aattcttcgt tgatttgaaa ttgcgggaca caaaaattat cattgatggc
      361 tattctcttt tccaccgact ttgcttcaat tcgaacttgg agctcaggta tggaggggac
      421 tatgattcgt ttgcagatgt tgtacagaaa ttctttgaat cactgtttgc ttgtcatatt
      481 tgcccgtatg ttgtattaga tggaggatgt gatattacag ataaaaagct gacaactttg
      541 aaggatcgcg ctagagagaa gatccaagcg gcccattccc tctctgttgg tgggggtggg
      601 aatgtgtgtc ccttactcat ccgagaagtg ttcatacagg ttttgatcag gcttaaggtc
      661 tgttttgtcc agagcttttc agaagcagat cgggacatta tgacacttgc caatcactgg
      721 aattgtcccg tgctatcatc agacagtgac ttttgcattt ttgacctaaa aagtgggttt
      781 tgcccgctga atagctttca gtggagaaat ctggacacta ttaaggatac acaagattac
      841 tatattcctg ccaaaagctt ttcccttgat gcattctgcc attacttcaa caacatgaac
      901 aaggctctac tgcctctctt tgcggtgcta tgtgggaacg accatgttaa tctgcccatc
      961 atggagacat tcataagtaa agtacgtcta ccctttagtt ctaaggggag gagatatcac
     1021 cgagttctgg gacttctgaa ctggttgtct aatttcgatg accccacgga agcactagat
     1081 aacgttctaa agtctctccc aaaaaagagt cgagagactg ttcgggaact tctctgctgt
     1141 tctatggaag agtaccagca gtcccaggtg aagctgcagg actttttcca gtacgggact
     1201 tacgtctgta cagatgcctt gaatctgggt ttaccagggt gggtactagc agctctggcc
     1261 aaagcccagc taccaccttt catcagtgat gctttggtgc tccgaaggac ctttcttcat
     1321 acacaagtag aaaatatgca gcgaccaaat gcccacagag tatctcagcc catccggcaa
     1381 atcatctatg gactcctttt gaatgcccca tcacatccag aagataaatc tccgaataca
     1441 ttgccttccc agcttctggc tttcaatgaa gtggaaagaa ttaaaacaaa tatcaaaaca
     1501 tcaactgttt atgtgaaaca actgctcaag gatcattgtg acttgagcaa attggctgag
     1561 ctccccttgt ctagacggca gatgcttctg ttagaagccc tgaaggtcaa acaggttgtc
     1621 ctggagtcca tccctacttc tctgaagttg cccattgctg tgacttgtta ctggttgcag
     1681 tccacagagg ccaaggcaaa gctccatcat ctgcaggccc tactgctggg gatgctgagg
     1741 gagcccttac atgtcatcat caacagccct gatagtgaag atccacggag aggtggtgcc
     1801 aagatgctgt atgaagaatt acaacaggtg aaggcagcca tgcggccggg tcccagattg
     1861 gatttagaca cagcccacgt cttctgtcag tggcagtcct gtctccagat gggcttgtat
     1921 ctcaatcagc tgctgtccac tcctctgcca gagccaaacc taacttggtt gtacaatgga
     1981 agcctggtcc acagactctg ccagcaactg ctagcatctt gttctgcaga aagcctcctg
     2041 agcatatgtc ctgaggcaag gcaactttat gaacatctgt tcagtgccac aagatcatat
     2101 gccccagctg aattgttttt accaaaagct acatcaaaat caaaaaaaag gaggcagaag
     2161 aagaagattg ccagcctggg aaccacttca gacaccaagc actggtatga cagaagcaac
     2221 cggtttagtc tgttagtgct tgaaagctcg gaggaacatg tagagaacgc agagcttgaa
     2281 taaacagtgt gcagtacaca aatgtctctt acctccctcg aagctaattt tctttaggac
     2341 taacctattt tgagataatc tgaattctaa gatattttat actatacttt taatacaacc
     2401 tggtttaaga aaaaaaaaaa aaaa
//
