LOCUS       NM_001398979            1777 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus ASPSCR1 tether for SLC2A4, UBX domain containing
            (Aspscr1), mRNA.
ACCESSION   NM_001398979 XM_039087548
VERSION     NM_001398979.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1777)
  AUTHORS   Cloutier,P., Lavallee-Adam,M., Faubert,D., Blanchette,M. and
            Coulombe,B.
  TITLE     A newly uncovered group of distantly related lysine
            methyltransferases preferentially interact with molecular
            chaperones to regulate their activity
  JOURNAL   PLoS Genet 9 (1), e1003210 (2013)
   PUBMED   23349634
REFERENCE   2  (bases 1 to 1777)
  AUTHORS   Bogan,J.S., Hendon,N., McKee,A.E., Tsao,T.S. and Lodish,H.F.
  TITLE     Functional cloning of TUG as a regulator of GLUT4 glucose
            transporter trafficking
  JOURNAL   Nature 425 (6959), 727-733 (2003)
   PUBMED   14562105
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Dec 29, 2021 this sequence version replaced XM_039087548.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.1040679.1,
                                           SRR26360194.1884325.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-133               JAXUCZ010000010.1  106450600-106450732
            134-189             JAXUCZ010000010.1  106451669-106451724
            190-304             JAXUCZ010000010.1  106455638-106455752
            305-405             JAXUCZ010000010.1  106457075-106457175
            406-463             JAXUCZ010000010.1  106466044-106466101
            464-537             JAXUCZ010000010.1  106467691-106467764
            538-970             JAXUCZ010000010.1  106468103-106468535
            971-1110            JAXUCZ010000010.1  106480749-106480888
            1111-1192           JAXUCZ010000010.1  106481071-106481152
            1193-1259           JAXUCZ010000010.1  106481888-106481954
            1260-1322           JAXUCZ010000010.1  106482602-106482664
            1323-1375           JAXUCZ010000010.1  106483072-106483124
            1376-1427           JAXUCZ010000010.1  106487456-106487507
            1428-1497           JAXUCZ010000010.1  106487722-106487791
            1498-1673           JAXUCZ010000010.1  106487863-106488038
            1674-1777           JAXUCZ010000010.1  106488128-106488231
FEATURES             Location/Qualifiers
     source          1..1777
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.3"
     gene            1..1777
                     /gene="Aspscr1"
                     /note="ASPSCR1 tether for SLC2A4, UBX domain containing"
                     /db_xref="GeneID:691026"
                     /db_xref="RGD:1588666"
     exon            1..133
                     /gene="Aspscr1"
                     /inference="alignment:Splign:2.1.0"
     CDS             32..1687
                     /gene="Aspscr1"
                     /note="alveolar soft part sarcoma chromosome region,
                     candidate 1; ASPSCR1, UBX domain containing tether for
                     SLC2A4"
                     /codon_start=1
                     /product="tether containing UBX domain for GLUT4"
                     /protein_id="NP_001385908.1"
                     /db_xref="GeneID:691026"
                     /db_xref="RGD:1588666"
                     /translation="MAAPAGGGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQD
                     FNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPASRSREGPENTVRIALQLDDGC
                     RLQDSFCSRQTLWELLNHFAQTRERLQQLGERTPVCVYMRDEVTGRAALQNTTLQSLG
                     LTGGSATIRFVIKQYDTTGKQESIAVRSKPPGSPVSSMSADQASSSPLLPLNSGEFSR
                     GDLNHQGGASTSGTSLKGGPKPADAQTKQSTTKESASAPFIPFSGGGQRLGGPSVSLR
                     SLTSPAAKSSTSFSGPGGPSKPKKSKPGEEPPQEPEPPVDRDPVVCHPDLEDLLQPWP
                     AEVPDEFFEVTVDDVRRRLAQLKSERKRLEEAPLVTKAFREAQMKEKLERYPKVALRV
                     LFPDRYILQGFFRPSETVGDLRDFVRSHLGNPELSFYLFIAPPKMVLDDHTLTLFQAN
                     LFPAALVHFGAEEPTGLYLEPGLLEHTVSPSTADVLVARCMSRAAGSPSLLPAPDPVS
                     LDSEPIAEEGALGPPEPIQGTAQPVKRSLGKVPKWLKLPASKR"
     exon            134..189
                     /gene="Aspscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            190..304
                     /gene="Aspscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            305..405
                     /gene="Aspscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            406..463
                     /gene="Aspscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            464..537
                     /gene="Aspscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            538..970
                     /gene="Aspscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            971..1110
                     /gene="Aspscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            1111..1192
                     /gene="Aspscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            1193..1259
                     /gene="Aspscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            1260..1322
                     /gene="Aspscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            1323..1375
                     /gene="Aspscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            1376..1427
                     /gene="Aspscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            1428..1497
                     /gene="Aspscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            1498..1673
                     /gene="Aspscr1"
                     /inference="alignment:Splign:2.1.0"
     exon            1674..1777
                     /gene="Aspscr1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggcgagccgg ctgcggtcac gtgagcggaa gatggcggcc ccggcgggcg gcgggggctc
       61 cgcggtgtcg gtgctggccc caaacgggcg gcgccacacg gtgaaggtga cgccgagcac
      121 cgtgctgctg caggtactag aagacacatg ccggcggcag gacttcaacc ccagtgaata
      181 tgacctgaag tttcagagaa ccgtacttga cctctctctc cagtggagat ttgccaacct
      241 tcctaacaat gccaagctgg agatggtgcc tgcgtcccgt agccgcgagg ggcctgagaa
      301 cacagttcga attgcattac agctggatga tggctgcagg ctgcaggact ctttctgttc
      361 cagacagacc ctctgggagc ttctcaacca ttttgcacag accagggagc gtctgcagca
      421 actgggtgag aggacccctg tctgcgtata catgagggat gaggtgactg gtagagctgc
      481 cttgcagaac acaacgcttc agtcactggg cctgacaggc ggtagtgcca ccatcaggtt
      541 tgtcataaag cagtatgaca ccactggcaa acaggagtct atagccgtca ggagcaagcc
      601 cccaggaagt ccagtctcct ccatgtcagc tgaccaggca tccagtagcc cattgcttcc
      661 tttgaactct ggggagttca gcaggggaga cttaaaccat cagggtggtg caagtacctc
      721 agggaccagc ctcaaaggtg gcccaaaacc agcagatgct caaacgaagc aaagcaccac
      781 aaaggagtct gcatctgccc cattcattcc tttctcgggt gggggccagc ggctgggggg
      841 cccgtctgtg tccttgagat ctctaacatc acctgctgcc aagtcatcca cctcgttctc
      901 tggccccgga ggcccttcta agcctaagaa gtcaaagccg ggtgaggagc ctcctcagga
      961 gcctgaaccg cccgttgacc gagatcctgt ggtgtgccac cctgacctag aggacttgct
     1021 acagccctgg ccagcagagg tgcctgacga gttttttgag gtgaccgtag atgatgtgag
     1081 gagacgcctg gcccagctca agagtgagcg gaagcgtctg gaagaagctc ccttagtgac
     1141 caaggctttc agggaggcac agatgaagga gaaactggaa cgctacccaa aggtggcgct
     1201 gagggtcctg ttccctgacc ggtacatcct gcagggcttc ttccgcccca gtgagacggt
     1261 gggggacctt cgagactttg ttcggagcca cctggggaat cccgagctct ccttttacct
     1321 cttcattgct ccacccaaaa tggtcctgga tgaccacacg ctgactctct ttcaggcaaa
     1381 cctcttccct gctgcgcttg tgcactttgg agctgaagaa ccaacaggtc tctacctgga
     1441 acctgggctg ctagaacaca ccgtctcccc atctacggct gatgtgctgg tggccaggtg
     1501 tatgtcccgg gccgccgggt ccccatccct gctgccagcc cctgaccctg tgtccctgga
     1561 ttctgagcca atcgctgagg agggggcact ggggccccca gagcccatcc aagggacagc
     1621 ccagcctgtg aagagaagcc tgggcaaagt gcccaagtgg ctgaagctgc cagccagcaa
     1681 gaggtgagag ccaccagcct ggagatgtcc atcatcaacc acaggaccca cccccaccca
     1741 ccccgagcag gaataaagag tcgcgcttct ctcaaaa
//
