LOCUS       NM_001009716            2768 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus aspartate beta-hydroxylase domain containing 2
            (Asphd2), mRNA.
ACCESSION   NM_001009716 XM_344726
VERSION     NM_001009716.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2768)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Mar 19, 2021 this sequence version replaced NM_001009716.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC088863.1, SRR26643298.81413.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760393, SAMEA5760433
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-268               JAXUCZ010000012.1  49908539-49908806
            269-1369            JAXUCZ010000012.1  49911808-49912908
            1370-1483           JAXUCZ010000012.1  49916772-49916885
            1484-2768           JAXUCZ010000012.1  49917776-49919060
FEATURES             Location/Qualifiers
     source          1..2768
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..2768
                     /gene="Asphd2"
                     /gene_synonym="RGD1306020"
                     /note="aspartate beta-hydroxylase domain containing 2"
                     /db_xref="GeneID:364948"
                     /db_xref="RGD:1306020"
     exon            1..268
                     /gene="Asphd2"
                     /gene_synonym="RGD1306020"
                     /inference="alignment:Splign:2.1.0"
     exon            269..1369
                     /gene="Asphd2"
                     /gene_synonym="RGD1306020"
                     /inference="alignment:Splign:2.1.0"
     CDS             562..1593
                     /gene="Asphd2"
                     /gene_synonym="RGD1306020"
                     /note="3110001L23Rik; calsequestrin-binding protein"
                     /codon_start=1
                     /product="aspartate beta-hydroxylase domain-containing
                     protein 2"
                     /protein_id="NP_001009716.1"
                     /db_xref="GeneID:364948"
                     /db_xref="RGD:1306020"
                     /translation="MWLEWLVAWSWSLDGLRDCIATGIQSVRDCDGTAVITVACLLVL
                     FVWYCYHVGREQPRPHVSVNSLLQGVDANGLQNGSMYCQSPECVRCTHHDGLNQKLYH
                     NLQEYAKRYSWSGMGRIHKGIREQGRYLSSQPSIQKPEVFFLPDLPTTPYFPRDAQKH
                     DVELLERNFQAILCEFEALYKAFSNCSLPQGWKVNSTPSGEWFTFDFVSQGVCVPRNC
                     RKCPRTYRLLGSLRTCIGNNVFGNACISVLSPGTVITEHYGPTNIRIRCHLGLKTPNG
                     CELVVGGEPQCWAEGRCLLFDDSFLHTSFHEGSAEDGPRVVFMVDLWHPNVAAAERQA
                     LDFIFAPGR"
     exon            1370..1483
                     /gene="Asphd2"
                     /gene_synonym="RGD1306020"
                     /inference="alignment:Splign:2.1.0"
     exon            1484..2768
                     /gene="Asphd2"
                     /gene_synonym="RGD1306020"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gttcctcgga gcccacgctt ccttgggaac tcgcagcgcg atgtccccag gccaagctga
       61 gcagcccctt ctccctccag tgagctgggc ataactggcc gtggctagct agactgggcc
      121 tccctgtggg caggcgccag gtctgcaaca gctccagtcg gcagcgccca ggcggggccg
      181 ggagccgccg atcttccagg ctgttctatt tgcaatttca tcccacgtgt ccgcggggcc
      241 tcagaagtgt gtgtgggatc catcacaggt ttggacatca tgaaagccct ttcatggtgg
      301 ctgactgcat ttgcaaatgg gacctaaggc agagccaccc tccgccccac tgcagtgact
      361 tttcctagtg ggcccagctg gcaggcctca ctgttgatca atggagccct tggcagggac
      421 cgagggacag tggcagccat gcctccccct gccaccacca ctccttctgc cgcctgctaa
      481 cctgcacgct gtgggtgccc tagagacccc cagaggactg accatctgag ccagcttcct
      541 tcgagcgccg agtcccccaa gatgtggctg gagtggctgg tagcctggag ctggtctctg
      601 gacggcctga gggactgcat cgccactggt atccagtccg tgcgggactg tgacggcaca
      661 gctgtcatca ctgtggcctg cctgctcgtc ttgtttgtgt ggtactgtta ccatgtgggc
      721 cgagaacagc cccgacccca cgtatccgtc aactccctcc tgcagggtgt ggatgccaac
      781 gggttacaga acggatccat gtactgccag tcccctgagt gtgtgcgctg cacgcaccac
      841 gacggcctca accagaagct ctaccacaac ctgcaggagt acgccaagcg ctactcatgg
      901 tctggcatgg gccgtatcca caagggcata cgggagcagg gccgctacct cagcagccag
      961 ccctctatcc agaagccgga ggtcttcttc ctgcctgacc tccccactac gccctacttc
     1021 cccagggacg cccagaagca cgatgtggag ctgctggagc ggaacttcca ggccatcctc
     1081 tgcgagttcg aggcactcta caaagccttc tctaactgca gcctccctca ggggtggaaa
     1141 gtgaacagca cccccagcgg ggagtggttc acctttgact ttgtcagcca gggcgtttgt
     1201 gtccccagga actgcaggaa gtgccctcgg acttaccgct tactcggcag cctccggacc
     1261 tgtattggga acaatgtttt cgggaacgcc tgcatctcag tgctgagtcc tgggaccgtg
     1321 atcacggagc actatgggcc cacaaacatc cgaatccggt gccacctagg tctgaagact
     1381 cccaatggct gcgagctggt ggtggggggt gagccccagt gctgggcaga aggccgatgc
     1441 ctactcttcg acgactcctt cctgcacacc tcgttccatg aaggttctgc tgaggatggc
     1501 ccacgggtgg tcttcatggt ggacctctgg caccccaacg tggcagctgc tgaacgtcag
     1561 gccctggatt tcatctttgc tccaggacga tgagaacatt gcctgggccg gagccaggct
     1621 gagtggatgg gtagactgtg ttattgccta ccctgactgt gctctgatct gtgctgggag
     1681 catgaatggc ttcctgtcac tgcggggcat ctttcctttg gttactggga acttcctagg
     1741 tttctttccc tttctggcta tttgctggga cttctgacct actagtgtgt ccctttggct
     1801 gtgaccagag gctctgtgcc tctcccgtct gtgtcacttt gctacctggt gtcctctccg
     1861 tgttctggaa tagagtaacc aaatggctgt tttgtctaaa tgtcatcatc ttaaacttgt
     1921 gtagctgtct caagagagac caaaaacaaa acagaacaga atgccacaga ccagaagcca
     1981 ttgaaccaga cggcttggcc tccgaggttg gggtttcaag gacccttcac tgtcccagag
     2041 caagagacag cctgctgcct acacatctgg ttggcctcat tatgggcttg ccagatacca
     2101 tcagggtggc gcgaaagtca gagcctgggg aatccgtcat tattgctgat agaccccgaa
     2161 tctatatagg cccttgtggt ggtgaccaac ctgggccttt tctttagcca cagcttccta
     2221 cagagcggga gaccaagtga gggttctcag gtcagccata gagcaaggat ccacttagct
     2281 cactgcctac agaagcctac tggtgagccc ggcctgacac atgctgctgc tgtggtttcg
     2341 agtccacaag attgtcagga ggcatgctgg gtcgaacctt tgccacccac catgtgatca
     2401 gagtatccat catgctcagc agtctattgc ctaagcgttg acattcatga tgcctgtgtg
     2461 tccaactttc acacgctaga ctcagagacg gcagagttgt cgccaggtct gtcagcactg
     2521 tcacaggagc ccatgggtgt gatgacacca gaaacagctt cagacccccg gatccacaga
     2581 ggtggtgctg agtcttctgt ctcctgagaa gacgcagttc tgtttccaaa gggaaggccg
     2641 gctggcgttt ctgagtccag ctgatgggag aattcggtca gccagacact ctcagtacac
     2701 actccggagc ggtggccccg gaggggtggt ctggagcggg acagaataaa caggttgcct
     2761 tacaggtc
//
