LOCUS       XM_006256407            1548 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus activating signal cointegrator 1
            complex subunit 1 (Ascc1), transcript variant X3, mRNA.
ACCESSION   XM_006256407
VERSION     XM_006256407.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006256407.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006256407.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1548
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1548
                     /gene="Ascc1"
                     /gene_synonym="Asc-1; CGI-18"
                     /note="activating signal cointegrator 1 complex subunit 1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 1 mRNA, 27 ESTs, 8 long SRA reads, 13
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 237 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:294512"
                     /db_xref="RGD:1359255"
     CDS             132..1202
                     /gene="Ascc1"
                     /gene_synonym="Asc-1; CGI-18"
                     /codon_start=1
                     /product="activating signal cointegrator 1 complex subunit
                     1 isoform X3"
                     /protein_id="XP_006256469.2"
                     /db_xref="GeneID:294512"
                     /db_xref="RGD:1359255"
                     /translation="MDVLRPQLVTFDGRNYRKNPVQEKQPQHEEEEDFYQDSMEYSDE
                     PCGAYEVEQTPHGFRATVSAPSLLYKHIVGKRGDTKKKIEVETKTSINIPKLGHEGEI
                     VITGHHRNGVVSARTRIDVLLDTFRRRQPFTHFLSFFLNEVEVQERFLEFQAEVLKKC
                     SKDRGVDSTIFQNPKKLHLTIGMLVLLSEQEIQQTCEILQRCKEEFINDISGGKPLEV
                     EMAGIEYMNDDPAMVDVLYAKVHMKDGSNRLQELVDRVLERFQSMGLVMKEWTSVKLH
                     ATVMNTLLRKDPNAEGRYNLYTADGKYIFKERESFDGRNILKTFENFYFGSLKLNSIH
                     ISQRFTVDSFGNYASCGHVDFS"
ORIGIN      
        1 gctcgcggcc gccccattgc gcaggcgtca acccgcccca cgcatgctca gtcggaggaa
       61 attgtctgca tacgcccggc gcgggagagc ctccagggtt tctttccacc cagttagtcc
      121 tggcaggtgt catggatgtt ctgcgcccac agcttgtaac attcgatggt cggaattata
      181 gaaagaatcc tgtccaggaa aagcagcccc aacatgaaga ggaggaggat ttctatcaag
      241 actccatgga gtactcggat gagccctgcg gtgcctatga ggtggagcag acccctcatg
      301 gattccgggc caccgtcagt gcccctagcc tgctctacaa gcacatagtt ggaaagagag
      361 gcgataccaa gaagaaaata gaagtggaga ctaaaacatc tattaacatt cctaaactcg
      421 gccatgaggg agaaatcgtg atcactggtc atcatcgaaa tggtgtagtt tccgcgcgaa
      481 ctcggatcga tgtcctcctg gacacgttca ggaggaggca gcctttcact cacttcctct
      541 ccttcttcct caatgaagtt gaagtccagg aacggtttct ggagttccag gcggaagtac
      601 tgaagaagtg ttccaaggat cgtggggttg acagcaccat ttttcagaat cccaaaaagc
      661 ttcacctaac tattggcatg ttggtactcc taagtgaaca agagatccag cagacctgtg
      721 agatcctgca gcgctgtaag gaggaattca ttaatgacat ttccggaggc aaacccctgg
      781 aagtagagat ggcagggatc gaatacatga atgacgaccc tgctatggtg gatgttcttt
      841 atgccaaagt ccacatgaaa gacggctcca acaggctgca ggaactagtt gatcgagtgc
      901 tggaacgctt tcagtcaatg gggctcgtca tgaaggagtg gaccagtgtg aaactgcacg
      961 ccaccgtcat gaacacactc ctcaggaaag accccaatgc tgaaggcagg tacaacctct
     1021 acacagcaga tggcaagtat atcttcaagg aaagagaatc ttttgatggc cggaacattt
     1081 taaagacatt tgagaacttc tactttggtt ccctgaagct gaattctatt cacatctccc
     1141 agaggttcac ggtggacagc ttcggaaact atgcttcctg cggacatgtt gacttctcct
     1201 gacatgggag agcatcggag aacagggact gactgaggcg ttggccatcg ggagcctggc
     1261 agcaccacag cagcaggccc ttccttcagg ctccagttga ctgacgagga ggacgctcca
     1321 gcctgtgctc ctccctcctg gctctcatcc tccccctcat ccttggcttc tttttcctca
     1381 ttcctcatcc tccagccctc ctttctgtga agcctgtccc tgaactctgt ggtgcatcat
     1441 ggtgctgtgg agaggtggtg cttctctgtg agatggcaca gcacaggccg tctgcaaata
     1501 aatgagcttc ccaggccgct gtgccgtgcc ctgggaacgg tgactgtg
//
