LOCUS       NM_001399347            2120 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus ankyrin repeat and SOCS box-containing 6 (Asb6),
            transcript variant 1, mRNA.
ACCESSION   NM_001399347 XM_006233912
VERSION     NM_001399347.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2120)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2120)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jan 6, 2022 this sequence version replaced XM_006233912.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.2092631.1,
                                           SRR26360176.1055787.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-225               JAXUCZ010000003.1  34512809-34513033   c
            226-401             JAXUCZ010000003.1  34511623-34511798   c
            402-508             JAXUCZ010000003.1  34510743-34510849   c
            509-617             JAXUCZ010000003.1  34510544-34510652   c
            618-704             JAXUCZ010000003.1  34509941-34510027   c
            705-2120            JAXUCZ010000003.1  34508390-34509805   c
FEATURES             Location/Qualifiers
     source          1..2120
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3p12"
     gene            1..2120
                     /gene="Asb6"
                     /note="ankyrin repeat and SOCS box-containing 6"
                     /db_xref="GeneID:296627"
                     /db_xref="RGD:1308445"
     exon            1..225
                     /gene="Asb6"
                     /inference="alignment:Splign:2.1.0"
     CDS             113..1369
                     /gene="Asb6"
                     /note="isoform 1 is encoded by transcript variant 1;
                     ankyrin repeat and SOCS box-containing protein 6; ankyrin
                     repeat and SOCS box protein 6"
                     /codon_start=1
                     /product="ankyrin repeat and SOCS box protein 6 isoform 1"
                     /protein_id="NP_001386276.1"
                     /db_xref="GeneID:296627"
                     /db_xref="RGD:1308445"
                     /translation="MPFLHGFRRIIFEYQPLVDAILGALGIQDLERQEPLDDYASSEE
                     SRILVLTELLEQKAHSPFYQEGVSNALLKMAELGLTRAAAVLLQSGANLNFEDPVTYY
                     TALHIAVLRNQPDMVELLVRHGADINRRDRIHESSPLDLASEEPERLPCLQRLLDLGA
                     DVNAADKNGKTALLHALASSDGVQIHNTDNIRLLLEGGADVKATTKDGDTVFTCIIFL
                     LGETVCGDKEEAPMINRFCFQVTQLLLAHGADPSECPAHESLTHICLKSFKLHFPLLR
                     FLLESGAAYNCSLHGASCWSGFNLIFERLCSHPGCAEDDSHVELLHKAETVLDLMVTS
                     SQRLQLPENFNIHPVGGLAGKIQALHASLRQLESYPPPLKHLCRVSIRLCLRPWPVDT
                     KVKALPLPDRLKWYLLSAHSSPEDTC"
     exon            226..401
                     /gene="Asb6"
                     /inference="alignment:Splign:2.1.0"
     exon            402..508
                     /gene="Asb6"
                     /inference="alignment:Splign:2.1.0"
     exon            509..617
                     /gene="Asb6"
                     /inference="alignment:Splign:2.1.0"
     exon            618..704
                     /gene="Asb6"
                     /inference="alignment:Splign:2.1.0"
     exon            705..2120
                     /gene="Asb6"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aacttccggt gcggaactga ggcctgggag gacgactgct caccggcgcg gggtctgaac
       61 cggtagatcg ggaggtggtg gcgagtgggt atccggacgc gcggccgacg ccatgccgtt
      121 cctgcacggc ttccgcagga tcatcttcga gtaccagccc ctggtggacg ccatcctggg
      181 tgccctgggc atccaggatc tggagcggca ggagcctctg gatgattacg cttccagtga
      241 ggagagccgg atcctggtcc ttacggagct gctggagcag aaggcccact ctcctttcta
      301 ccaggaaggt gtgagcaatg ctctgctgaa gatggccgag ctgggcctga cccgggcagc
      361 tgcggtcctc ctgcagagtg gggccaacct caactttgaa gaccctgtca cctactacac
      421 agccctgcac attgctgtcc tgagaaacca gcctgacatg gtggagctgc tggtgcgcca
      481 cggggctgat atcaacagga gggaccggat ccacgagagc agccccttgg atctggccag
      541 tgaggaacct gaacgcctgc cctgcctgca gcgcctcttg gatcttggag cagatgtcaa
      601 cgcagcagac aagaatggga agacagcgct gttgcatgct ctggccagca gtgatggggt
      661 gcagatccac aacacagaca acatccggct cctcctggag ggaggggcag acgtcaaggc
      721 taccaccaaa gatggggaca ctgtattcac atgcatcatc ttcctgctcg gtgagaccgt
      781 ctgtggggac aaggaggagg ccccaatgat caaccgcttc tgcttccaag tcacgcagct
      841 tttgttggcc catggtgccg accccagtga gtgcccagcc cacgagtccc tcacgcacat
      901 ctgcctcaag agcttcaagt tgcacttccc actcctgcgc ttcctgctgg agtcaggggc
      961 agcctacaac tgctccctgc atggtgcgtc ctgctggtct ggcttcaacc tcatttttga
     1021 gaggctctgc tcgcacccgg gctgcgccga ggatgatagc catgttgagc ttctgcataa
     1081 ggctgagacc gtgctggacc tcatggtgac tagctcccag aggctgcagc tgcctgagaa
     1141 cttcaacatc cacccagtgg gtggcttggc agggaagatc caggcccttc atgcctccct
     1201 gaggcagctc gagagctacc caccacctct caaacacctg tgccgggtgt ccatccggct
     1261 gtgcctgcga ccgtggcctg tggacaccaa ggtcaaagcg ctgcccttgc cggacaggct
     1321 caagtggtac ctgctcagtg cacacagtag cccagaagac acttgctgag ggatcccagg
     1381 atagaatgat ctggggtagc caaagccagc ctgagggtag gcctggcacc tgtaatcgcc
     1441 ttcagaaggt cctttatctg ggcaaggttt gcccttttct gctatgaaac cactaggggg
     1501 tgccctggag gccaaaggca tggctgcctc cagggagatt cccaccccct ccctcttagt
     1561 atttcacaac tgaggggcca gggcaggcag gatgcagcca ccctctgtat taggagctga
     1621 ctggaccatt tgcagggaac taggggccag gcccctcaga actctggcaa ctatggttgg
     1681 tccgatgggg gaggcacatg cctgggtctt tccaggggca gtgccaaaat tcctgggcca
     1741 tccagttagg ccctacctat tcctgccacc tcggacctca ggatgccttg gaggagctgg
     1801 ggacagaact gaggccagca caggctggcc ggtctgggtt agaggcctgc ctggtcttgt
     1861 ggtcttcagg gctctggcac catggttggt ggtccttctg ttcatgcctc acccaggtct
     1921 caaggatggt gccttgttta agggcatctc gggaacagca ggactttgtg aggggtcctt
     1981 cagaatacag tgctgaggcc agaagccagc cctactccag tgccaagccc tcacaaggtc
     2041 ttcccagtag gtttggcttt cggttgtata aatgcctctg ggaatgagca gagatgatta
     2101 aatatattta taagattaaa
//
