LOCUS       NM_001399413            1584 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus ankyrin repeat and SOCS box-containing 5 (Asb5),
            transcript variant 2, mRNA.
ACCESSION   NM_001399413 XM_039094696
VERSION     NM_001399413.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1584)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            On Jan 7, 2022 this sequence version replaced XM_039094696.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643296.35485.1,
                                           SRR26643295.52615.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-309               JAXUCZ010000016.1  44010129-44010437   c
            310-389             JAXUCZ010000016.1  43979921-43980000   c
            390-497             JAXUCZ010000016.1  43977253-43977360   c
            498-648             JAXUCZ010000016.1  43976131-43976281   c
            649-783             JAXUCZ010000016.1  43975836-43975970   c
            784-975             JAXUCZ010000016.1  43972814-43973005   c
            976-1584            JAXUCZ010000016.1  43970940-43971548   c
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p11"
     gene            1..1584
                     /gene="Asb5"
                     /note="ankyrin repeat and SOCS box-containing 5"
                     /db_xref="GeneID:361187"
                     /db_xref="RGD:1565973"
     exon            1..309
                     /gene="Asb5"
                     /inference="alignment:Splign:2.1.0"
     CDS             114..1103
                     /gene="Asb5"
                     /note="isoform 2 is encoded by transcript variant 2;
                     ankyrin repeat and SOCS box protein 5"
                     /codon_start=1
                     /product="ankyrin repeat and SOCS box protein 5 isoform 2"
                     /protein_id="NP_001386342.1"
                     /db_xref="GeneID:361187"
                     /db_xref="RGD:1565973"
                     /translation="MSVLEESRPFAQQLSNVYFTILSLFCFKLFVKISLAILSHFYIV
                     KGNRKEAARIAAEFYGVSQGQGSWADRSPLHEAASQGRLLALRTLLSQGYNVNAVTID
                     HVTPLHEACLGDHVACARTLLEAGANANAITIDGVTPLFNACSQGSASCAELLLEYGA
                     KAQLESCFPSPTHEAASKGHHECLNVLIAWGVDIDQDIPHLGTPLYVACMSQQFHCIW
                     KLLYAGADVHKGKYWDTPLHAAAQQPSTEIVNLLIEFGADINAKNTELLRPVDLVTSN
                     SAVERILLQHEATPSSLCQLCRLCIRNYIGRQRLHLIPQMQLPTLLQNFLQYR"
     exon            310..389
                     /gene="Asb5"
                     /inference="alignment:Splign:2.1.0"
     exon            390..497
                     /gene="Asb5"
                     /inference="alignment:Splign:2.1.0"
     exon            498..648
                     /gene="Asb5"
                     /inference="alignment:Splign:2.1.0"
     exon            649..783
                     /gene="Asb5"
                     /inference="alignment:Splign:2.1.0"
     exon            784..975
                     /gene="Asb5"
                     /inference="alignment:Splign:2.1.0"
     exon            976..1584
                     /gene="Asb5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 accagttgat attttctttc cttaggacca gctgttcaag agcatcccgg aacagagcca
       61 gacacagttg atacttggcg ggacctaaca ccagggcaga ttcctctgca gcaatgtcgg
      121 tgttagaaga aagccggcca tttgctcaac agctatctaa tgtctatttt acgatactct
      181 cccttttctg ttttaaactt tttgtgaaaa tcagcctcgc catccttagt catttctaca
      241 tcgtgaaagg caaccgaaag gaagctgcga ggatagccgc tgagttttat ggagtaagcc
      301 aaggacaagg atcctgggca gatcgatcac cactgcatga agctgcaagt caaggtcgtc
      361 ttcttgctct gaggacatta ttatcacaag gttataacgt aaatgcagta actatagacc
      421 atgtcactcc actccatgaa gcctgcctgg gtgaccatgt ggcatgtgca aggactctcc
      481 tggaagctgg agctaatgca aacgcaatca caatagatgg cgtgactccc ttgttcaacg
      541 catgctcaca aggcagtgca agctgtgcag agctcctttt ggagtatggt gccaaagccc
      601 aactggagtc ctgttttcca tctccaacac atgaggctgc cagcaaaggt caccatgaat
      661 gtctcaacgt tttgatagcc tggggcgtag acattgacca agacattcct cacttgggga
      721 ctcctcttta tgtagcttgt atgtcacaac agtttcattg catctggaag cttctttatg
      781 ctggtgctga tgtacacaag ggcaagtact gggacactcc cttgcatgct gctgctcaac
      841 agcccagtac cgaaattgtg aacttattga tagaatttgg agcggacatc aatgccaaga
      901 acacagaact tttgcggcct gtcgacctgg tgacatctaa cagtgctgta gaaagaatac
      961 ttcttcaaca tgaagctact ccaagctctc tttgccaact ctgccgactc tgcatccgca
     1021 actacatagg aagacaaagg ttgcatctta tcccccagat gcagttacca acattgcttc
     1081 agaatttctt acagtatcga taacacagaa aatggtttca ctttcttgag gattcaaaat
     1141 tttctatttc attttctttt taaaatatag aatgataagg gtgatggtat gtataagttc
     1201 acccaggaca gccataaaat ctcagtggat tttcatctga agaatattca tgggtagtgt
     1261 ttatcaattt ttatggtctt tggattatgt ttaaaatatc tataccatct tagcattctt
     1321 ggtgtatctt cttgatttaa aggaaagatt aaaatttatc cattttatgt ttttttatta
     1381 tagtgtggga aacaaaattg catagttttg ctaaacattt agtcgaatta taaatttcat
     1441 cctgtgttac tttttgaatg atctgtagtc tcaagtaatg ggttaactgt aattttagct
     1501 agttattgat tacctctgtg tttttaatat tgacataaaa ttagagcaac taatatgctt
     1561 tttgaaataa agatgactca tgta
//
