LOCUS       XM_039111293            6029 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus ArfGAP with SH3 domain, ankyrin repeat
            and PH domain 3 (Asap3), transcript variant X1, mRNA.
ACCESSION   XM_039111293
VERSION     XM_039111293.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 1, 2024 this sequence was replaced by
            NM_001427661.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6029
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6029
                     /gene="Asap3"
                     /note="ArfGAP with SH3 domain, ankyrin repeat and PH
                     domain 3; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 19 ESTs, 3 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 65 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:684122"
                     /db_xref="RGD:1593929"
     CDS             252..2963
                     /gene="Asap3"
                     /codon_start=1
                     /product="arf-GAP with SH3 domain, ANK repeat and PH
                     domain-containing protein 3 isoform X1"
                     /protein_id="XP_038967221.1"
                     /db_xref="GeneID:684122"
                     /db_xref="RGD:1593929"
                     /translation="MPEQLSVAEFLAVTAEDLSSPAGAAAFAAKMPRCRGAALAREEV
                     LEGDQAILQRIKKAVRAIHSSGLGHVETEEHYREAVEALGNSHLSQNSHELSTGFLNL
                     AVFTREVAALFKNLVQNLNNIVSFPLDNLMKGHLRDGRHDSKKHLEKAWKDYETKVAK
                     LEKERDRARFPGGSHGAMSQDTQRERRVFQLHMCEYLVKAGESQVKQGPDFLQSLIKF
                     FHAQHNFFQDGWKAAQSLSPFIDKLAASVHGLRQAQEEELHKLTQLRDSLRGMLHLES
                     REEHPNRKNSGGGYSIHQHQGNKQFGTEKVGFLYKKSDGIRRVWQKRKCGVKYGCLTI
                     SHSMVNRPPVKLALLTCQVRPNPEDKRCFDLVTHNRTYHFHAEDELECEAWVSVLQNS
                     KDEALSSAFHGEPSGGQWSWGTRLDTEPHDLTNMLVAEVKSRPGNDHCCDCGAADPTW
                     LSTNLGVLTCIQCSGVHRELGVRYSRIQSLTLDLLGPSELLLALNIGNSHFNEVMEAH
                     LPSHGSPKPSAESDMSSRRNYIVAKYVEHKFARRSTPEPQKLRTAICSRDLLSVLEAF
                     ANGQDFGQLLPGPDGQAPGELALHLAIRVASQASLPIVDFLIQNGGHLDAKAADGNTA
                     LHCAALHGQLDCLKLLLKGRAPMGAVNNAGETALDVARNKQHKDCEELLEQAQAGTLA
                     FPLPMDYHWGHSMDHGFDSEEEEEEKHCPVKPPAQACWSSGRLDISNRTYETVANPGP
                     TSSQSQSEDSPPPLPIKNSSRTILLGRAGDSSRDRSDIPSLRSESPEASENRSSPASS
                     SSSFTSSVEPGGLSQALPSPEESLQEPPGTSRPGLASGTTPAEVYLPVRFSSESTRSY
                     RRGGRNLEDGPAARLPLCRRNIPVGLMEGDGSKIGVLPASSLQLSHD"
ORIGIN      
        1 gagttactag tgagtagagg gcgtggccag gaaggtagac aagcggaccg ggggcgtggc
       61 cgaagaggaa ggctggcgga cgggggcgtg gcggagaagt taggggcgtg gcggggcaga
      121 gagtgaagag gcctggactg ggaagctgcg ggtagtgagg caggccctgc agcgagcagc
      181 tatcccggcg cggttaagta cagcgtcccc cgcgctctag gcagccccgg cgtctccgcc
      241 ttacgcccac catgcccgaa cagctcagtg ttgcggagtt cctggccgtc accgctgaag
      301 acctcagttc cccagccggg gcagctgcct tcgccgccaa gatgccccgg tgccgcgggg
      361 cggcgctggc acgggaggag gtcctggaag gagaccaggc tatcttacag aggatcaaga
      421 aggctgttcg tgctatccac agctctggtc ttggccatgt ggagaccgag gaacactacc
      481 gagaggctgt ggaggccttg gggaatagtc acctgtccca gaacagtcat gagttgtcca
      541 ctggcttcct aaatctcgct gtgtttaccc gagaggtggc cgccctcttc aagaacctgg
      601 ttcagaacct gaacaacatc gtctccttcc cgctggacaa tctgatgaag gggcatctaa
      661 gggatgggcg acatgattcc aagaagcatc tggagaaggc atggaaggac tatgaaacca
      721 aagtggccaa gctggagaag gagagggatc gagccaggtt cccaggagga agccacgggg
      781 cgatgtccca ggacacacag cgagaacgac gagtcttcca gctgcacatg tgtgagtacc
      841 ttgtcaaagc tggagagagc caggtgaagc aaggcccaga cttcctgcag agcctcatca
      901 agttcttcca cgcccagcac aacttcttcc aagatggctg gaaggcagct cagagtctgt
      961 ccccgttcat tgacaagctg gcagcctcgg tccatgggct taggcaggct caggaggagg
     1021 aactgcacaa gctcacccag ctccgagact ccctccgtgg gatgctgcat ctggagagca
     1081 gagaggagca cccaaaccgg aagaactcag ggggcggcta cagcatccac cagcaccaag
     1141 gcaacaagca gtttgggact gagaaggtgg gcttcctgta caagaaaagt gatgggattc
     1201 gaagagtctg gcagaagagg aagtgtggag tgaagtatgg ctgcctgacc atctcacaca
     1261 gcatggtcaa caggccccca gtgaagttgg ccttgctgac gtgccaagtg aggccaaatc
     1321 ctgaggataa aaggtgcttc gacctggtga cccacaaccg tacgtaccac ttccatgcag
     1381 aggacgaact ggagtgtgag gcatgggtgt ctgtgctaca gaatagcaag gacgaagcac
     1441 tgagcagcgc ctttcacggg gagcccagtg gcggccagtg gtcttggggc accagactgg
     1501 atacggagcc ccacgactta accaacatgc tcgtcgcgga ggtgaagagc aggccaggga
     1561 atgaccattg ctgcgactgt ggggctgcag accccacgtg gctcagcacc aacctgggcg
     1621 tgctcacctg catccagtgc tccggtgtcc accgggagct gggcgtgcgc tactcccgca
     1681 tacagtcgct cactttggac ctcctgggcc cctcggagct gctgctggct ttgaacatcg
     1741 gaaactccca cttcaatgaa gtcatggagg cccacctgcc ctcccacggc agccctaaac
     1801 cctctgctga gagtgacatg agcagccgca ggaactacat tgtagccaag tatgtggaac
     1861 acaagtttgc aaggcgttct acacctgagc cccagaaact acggacagcc atttgcagca
     1921 gggacctcct gtccgtcctg gaggcctttg ccaatgggca ggacttcgga cagctgctgc
     1981 cagggcctga tgggcaggca cctggagagc ttgccttgca cttggccatc agagtcgcca
     2041 gccaggcttc cctacccata gtggacttcc tcatccagaa tggtggccac ctggatgcca
     2101 aggctgcgga cggaaacacg gccctgcact gtgctgccct ccacggccag ctggactgtc
     2161 tcaagctgct actgaaaggg agagcgccca tgggagcagt aaataatgct ggagagacag
     2221 ccctggacgt agccaggaac aaacagcaca aggactgtga ggagctgctg gagcaggcac
     2281 aagcagggac gctagcattc cctctcccta tggactacca ctggggccat tccatggatc
     2341 acggctttga cagtgaggaa gaggaggaag aaaagcactg ccccgtgaag cccccagcac
     2401 aggcctgctg gagcagtggg aggctggaca tcagcaacag gacctatgag accgttgcca
     2461 acccgggacc aacctcctct cagagccaaa gcgaggacag tcccccaccc ttgcccatca
     2521 aaaactcttc tcggaccata ctcctcggac gagccggaga ttccagtaga gatcgttctg
     2581 acattcccag cctgagatca gagtctcctg aggcctcaga gaaccggagc agcccagcat
     2641 cttcctcctc cagcttcacc agttctgtgg aacctggggg gctgagccaa gccctgccta
     2701 gccctgaaga aagcctccag gaaccaccag gcacctcccg ccccggcctg gcgtctggaa
     2761 ccacccccgc tgaggtgtat ctccccgtca ggttcagctc ggagagcact cgatcctaca
     2821 gacggggagg ccggaatctg gaagacggtc ccgctgcccg gctgcctctg tgtagaagga
     2881 acattccggt tggcctcatg gaaggagatg gttcaaagat tggggttctc ccggcaagtt
     2941 ccctgcaact ctcacatgac tagctcctcg ctgattcctc tgcatggccc acactggacc
     3001 ccaacattca gtgcttggac ttgagaccac agatctggga gctcaccttt tgggaaccat
     3061 gaccctgcca aggacactgg cccgtctgtg ttggagctga tgtcctgggc caggcagctc
     3121 tggagttagg tctgacagtg tctgggctgg gttaagttac acaatcctca gtattcacca
     3181 tacaggattg tgctccccct accagggtgg ggtccactca ccatcattca cacccaggta
     3241 ctgtcttgta gccacgtatc aatctggtga ttctctttag tgaagtctaa cttcgggtcc
     3301 agacctttgc taggtaccac agatgccaca agagtaagac acacgtcctg caggtgtggg
     3361 ctcctcattg gaaagctggg cccaagaact gccgtggaac gagcagagcc agatgcagag
     3421 ggaaggctct gggctcaggg ccaggacgga catcagctgg tctcctgtct ggtcactgca
     3481 gttgttaaca acccagatct aggtggtcaa ggcctgtggt ggacaggcta aactactccg
     3541 aatggctccc ttagagacca gccttaccct ccctggggtc cccagcctgg aagtagaaga
     3601 tgactcacct gccttccttg attcaacaga aaggaaaggg atggtctggg ttgactgatc
     3661 ccgtttctcc cacttttctc ttgatgaaat cagaaggctg ggggaagtga gggaccagaa
     3721 aaggagaaag gtgttgggaa gataagaaag tctgctttct agggccagaa atcccaccat
     3781 tgctcagtct caattacaaa gccagaccac cagcacccac agatagctcc gttttatacc
     3841 cacttggtgg tgggtccttc gggggtgggc caagccaaac gggaggccag agggcaccca
     3901 gtgaatggcc agcagcgtgg ctaggagttg aactgttcac cctggaggct ggcatgttcc
     3961 ttggtcctga agcagcagga ttgtttctga gccccaggtg agcttccgtt catctcagac
     4021 tcactgttta cttatctcta ataaaggctt cttgggggag ggatgaatcc cctgggacac
     4081 tcttgggact tgggacgctt tccctggtcc cagcgatggc catgttggta aagaatggtg
     4141 ggtccccagg agacgtttgg taaggcgagg cgttcctact ggagagggca tccccgaggt
     4201 cagggtgccc atgagcatcc tccgttacag tgtctctttg tgttgttgta agggaccgac
     4261 ggaggctgag tgctttctac agtaaatggc tttatttggc ttagggttct ggtgattgga
     4321 aagtccaaac agtgtgtcat gaatgccctg taaaaggccc aggctgtctc agcatcacag
     4381 agagggagag agcaagggct tatgtgcagt gatcttaatt tgctttatag caactcactt
     4441 ttgtcagaat tcactccctt aaagcacaca taattgcctt ccactaggcg ccacccctta
     4501 aaggctcagt caaccctcaa cattgccaca ccaggaacca agaaaacact caaaacatac
     4561 ccacatggca agggtcaatc tcaccacaat gaattagcca atccaaaatg tcgtcaggag
     4621 caaggttcag aacccctggt gtgcaggaaa gcatactgga ctggagcttg aggactggat
     4681 gcttgactct cccagggtcc tgaccacatc cccctctgag tttgtgagat gagcctggaa
     4741 gcatagcagg tggagaaatg tagcaggagg tcagccagca gcgaaggact ggaggagaag
     4801 gctgttggga aagtgcttgc cacacaagcc ttaggacgtg agttcagatc ttcagggctc
     4861 aagcaaaaag ctgggcatgc agtctactcc cacactcctg gctctgtgga agcggaccct
     4921 ggagggaccc cagaagcttg ctgaccagct ccaggttccg tgagagaccc tgtctcaaaa
     4981 taaggaggct agcaattgag aaaaacgcct actaatctct ggctgccaag tacattctca
     5041 cacacataca caaaagcata aaggctgctg ggacagcagc acacatctgt aattccagca
     5101 ctctgggggc tgaggcaggg gcatagtgag ttaggaaata tcttcgtgct gtccctttga
     5161 gagtaaagaa tggggttgga gagatggctc agtggttaaa acactatctg ctcttccaga
     5221 ggacctgagt tcaattccca gcaaccatgt ggtggctcac gaccatctgt aatgagatct
     5281 gatgtcctct tctggcttgt ctgaagacag tgtagtcaca tacataaatc ttaaaaagag
     5341 taaagaatgt ttaccaccaa tggtgggacc ctttgggggt atcagttccc tgtctgcccc
     5401 cagggctcac agggagatat gacagctgtg tgtccttgtg tacctgtgac ctctcccttg
     5461 gacaggtggg cagaggggat acaatgggtt ccacagtact ggctacattc caggagagta
     5521 tcagtgaggc accccacttc ctgagattca gtcttctatt tgcataaggt cggatggttt
     5581 tcttagggtc cttcaagctt cttttggcca agaggcctcc caggagccca ctgaagaaaa
     5641 acctggcttc ggcaacacgg tgcgaaggcc ccgcccttcc cctgctggcc acacatccct
     5701 actctatagc cacagacttt tcagttctcc ccgcttatgc ttacacgtcg aagaccctcc
     5761 catccccaag ctctgtaagc tgagtgctcc aggagagctg tctccttcct tctggatgct
     5821 agaaatacct ggagcaaagt aggtgctcag taaatagaac aaaagattac atagaactct
     5881 ttctcctacc aaacttccac tctgccttct ggagcaattt cactccttgg gagggggacg
     5941 agcccctagc tgggccttac acttgctctc tctccctcct ttccccaccc cagctgtgat
     6001 gaatacagtc ctctttaatg gttatttta
//
