LOCUS       NM_001419692            2004 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus armadillo repeat containing, X-linked 6 (Armcx6),
            transcript variant 2, mRNA.
ACCESSION   NM_001419692 XM_008773425
VERSION     NM_001419692.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2004)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2004)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   3  (bases 1 to 2004)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Apr 13, 2023 this sequence version replaced XM_008773425.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.1604024.1,
                                           SRR26360190.3057093.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840107 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-90                JAXUCZ010000021.1  102225147-102225236 c
            91-183              JAXUCZ010000021.1  102224753-102224845 c
            184-263             JAXUCZ010000021.1  102224364-102224443 c
            264-2004            JAXUCZ010000021.1  102222288-102224028 c
FEATURES             Location/Qualifiers
     source          1..2004
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq32"
     gene            1..2004
                     /gene="Armcx6"
                     /note="armadillo repeat containing, X-linked 6"
                     /db_xref="GeneID:363496"
                     /db_xref="RGD:1359303"
     exon            1..90
                     /gene="Armcx6"
                     /inference="alignment:Splign:2.1.0"
     exon            91..183
                     /gene="Armcx6"
                     /inference="alignment:Splign:2.1.0"
     exon            184..263
                     /gene="Armcx6"
                     /inference="alignment:Splign:2.1.0"
     exon            264..2004
                     /gene="Armcx6"
                     /inference="alignment:Splign:2.1.0"
     CDS             408..1313
                     /gene="Armcx6"
                     /note="arm protein lost in epithelial cancers, X
                     chromosome, 3; protein ARMCX6-like"
                     /codon_start=1
                     /product="protein ARMCX6"
                     /protein_id="NP_001406621.1"
                     /db_xref="GeneID:363496"
                     /db_xref="RGD:1359303"
                     /translation="MGRAREMGWMAAGLMIGAGACYCMYKLTMGRDEGNELENEEEDE
                     WDDEQDLDEEEADIWFDFTAMARPWSEDGEWDEPGAPGGTEDRRSGGGKANRAHPTKQ
                     RPFPYEHKNIWGVQSFQTFPCALNLTKCAFSQGKKMFTESTIAGFSLTHNVSRHLSSL
                     SVVGSRSPTPQPTVREKALDVPEHPNSSIENQDQIKMYIDEVCRDAVFCCCKSFLQQA
                     GLGLLISMTVINNMLAKSLSDPKFPLLSEGSGCAKVQGLEAQMSLPEKPVLAEEVLAA
                     QMLFSFMCLFTRSGSREMLVEAISP"
ORIGIN      
        1 gaagtcctgt tagtcgcctc tgactgggta ccaaccccct attactctgc aggcgcgtga
       61 aggagaagga aactcgctgg gaccgtgcag gtctgcgctg gagcctaggc tagagaagaa
      121 gcaaaccgcc ttggttggaa ccttgctgca ggtttgaagg tgggattcat ctcgaaccta
      181 atggctcagc ccacctatct ccgtggaggg aatacagcag aagacacgag aagaaaaaag
      241 gaacccactt ggtttttgta gagattcacc acaagaatca cagaagccta ggagaggctg
      301 aagattccga gtgtgcacca ttattcacac atcccttgaa agttctcttc aatcaggtga
      361 agaaagaccc tcttctttct ggccagaagg ctcatacagc tacaagcatg ggtcgggccc
      421 gggaaatggg gtggatggca gctggactaa tgattggggc tggcgcctgt tactgcatgt
      481 acaaactgac catgggaaga gatgagggga acgagttgga gaatgaggag gaagatgaat
      541 gggacgatga gcaggatctg gatgaagagg aggcagacat atggtttgat ttcacagcaa
      601 tggctcgacc ctggagtgag gatggggaat gggatgagcc cggggcccca ggtgggacag
      661 aggacagacg gtcaggtggt ggaaaggcaa acagagccca cccaaccaag cagcggccat
      721 tcccttatga acataaaaac atatggggtg tacaaagctt tcagaccttc ccttgtgctc
      781 ttaacctgac caagtgtgct ttcagtcaag gaaagaaaat gttcacggag tccacaattg
      841 ctggcttttc ccttacccac aatgtcagta ggcatttgtc cagcctgtca gtggttggaa
      901 gcaggagtcc caccccccag cccactgtga gggagaaggc tctggatgtc cctgaacacc
      961 caaacagcag cattgaaaat caggaccaga ttaagatgta catcgatgaa gtgtgtagag
     1021 acgcggtgtt ctgttgctgc aagtcttttc tgcagcaggc aggattaggt ctgctaataa
     1081 gcatgacagt cattaataac atgcttgcca agtccctttc agacccgaag ttccctttgc
     1141 tatccgaggg gagtggatgt gcaaaggttc agggtctgga agcacagatg agtttgcctg
     1201 aaaagccagt gctggcggag gaagtactgg ctgcccaaat gctcttctca ttcatgtgcc
     1261 tctttaccag aagtgggagc agagagatgc ttgtggaagc catctcccct taagtggctg
     1321 tctctggaag aatgagactg aagtcaccca gagcccgagc actttactga gggcaaagag
     1381 gctgcagtgg gtgctcccaa ggatgcggtc ttagccagtc agctcctcct tgggtgagag
     1441 tcccttccag cctctaaata gagggctaca ctctcactgg ccaggcaggg ctcccccaga
     1501 gctgtgggca ccttctgggt tttgtagtct gcgagtaaag tgcactgtaa attgcttcct
     1561 tgcagtcttc tccatgcagt aaagggtagg ggatccccgt ggcccctagc tgtggagaac
     1621 tagcctcaaa tcacagcgtc tagataaagg gtaaggggat ccctgcagtc accggctggc
     1681 tgtggataac ttacatggaa tcacagcatc agagtgagtg ttgttgccca tggtgatctc
     1741 cctgtgtaag ctggaccact taacagaaat cgcacccata tgggagcttg agcccaactc
     1801 ccttctgcag ctgcttaggt tgaagtcttt cctccttcct ccttcctcct gcctacactg
     1861 gctggtggat ggctagcatg tttaccaaga aatgcactcc cttcctgtcc attgtagtgc
     1921 ctgaccctct tactccccgg tcctgacacc ctcagtgcgt atcctcaata aactgtgtgc
     1981 tttgattggc aagaaaatta aaaa
//
