LOCUS       XM_039083409            4802 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus armadillo repeat containing 9 (Armc9),
            transcript variant X2, mRNA.
ACCESSION   XM_039083409
VERSION     XM_039083409.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051344.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039083409.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4802
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4802
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /note="armadillo repeat containing 9; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 13
                     ESTs, 1 long SRA read, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 25 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:301579"
                     /db_xref="RGD:1305615"
     CDS             190..2685
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /codon_start=1
                     /product="lisH domain-containing protein ARMC9 isoform X2"
                     /protein_id="XP_038939337.1"
                     /db_xref="GeneID:301579"
                     /db_xref="RGD:1305615"
                     /translation="MGDVLAHESELLGLVKEYLDFAEFEDTLKTFSKECKVKGKPLCK
                     TVGGSLKKDSNSLMIQKDLVAAFDSGDQKLFFDLWEGHIPSSIRDTDSLAQKLEFYLH
                     IHFAIYLLKYSGGRPDRQELDERISYFKTYLETKGASLSQTTEFLPFYALPFVPNPMV
                     HPSFKELFQDSWTPELKLKLEKFLALIFKASNTPKLLTIYKENGSNNKVPTLFLEMLQ
                     QLHQQLLEAERRAMAYLKRYNKMQADYHSLIGVTAELVDSLEATVSGKMITPEYLQSV
                     CVRLFSNQMRQSLAHSVDFTRPGTASTMLRASLAPEKLKDVPLLPSLDYEKLKKDLIW
                     GSDRLKAFLLQALRWRLTTSHPGEQRETVLQAYISNDLLDCHSHNQRSVLQLLHSKSE
                     AVRQYMARLVNALASLAEGRLYLAQNTKVLRMLEGRLKEEDKDVITRENVLGALQKFS
                     LRRPLQTAMIRDGLIFWLIDLLKEPDCLSDYTLEYSVALLMNLCLRSAGKNMCAKVAG
                     LMLKVLSDLLGHENHEIQPYVNGALYSILSIPSIREEARAMGMEDILRCFIKEGNAEM
                     IRQIEFIIKQLNSEDLLDGVLESDDDEDEDDEEDHDIMEADLDKDELIQPQLGELSGE
                     KLLTTEYLGIMTNTGKARRKGLASVQWSGDEPLRRPVTPGGHRTGCPVVGDHLISSQN
                     AQQARNGCPRPIPVAQPDDYKEGKRGVAGRATPSSFMDHKPREWLPAGHQESRLIPTA
                     ALSWPREVIQDPSSGHTTREFTPAFTYKAQIPSTPETVEQNPLKAKALSLAPQFSSSG
                     PQQARRPASPASSTRACTAASPSGNEDGFLPKL"
ORIGIN      
        1 accgctcact ctccctccca ggatgcttcg cgtcgtcttt gccctgcaag attggccggg
       61 tcgcctcacg tgacttcgga taggtagcgg ttgccgaggt gacagcaggc gagctggcgg
      121 tctggaggag tgagagcaca gccccgcagc agagatttct gctgtgagaa ttaccagtaa
      181 cagttcacta tgggggatgt cctggctcac gagtctgaat tacttggact agtgaaagag
      241 tatttagatt ttgctgaatt tgaagacacc ttgaagacat tttcaaaaga atgcaaagta
      301 aaaggaaagc cactatgtaa aactgtcggt gggtcactaa agaaggactc caactcactg
      361 atgatccaga aggatttggt ggcggcgttt gacagtggag accagaagtt gttcttcgat
      421 ttgtgggagg gacacattcc cagctccatc agagacaccg actccctggc tcagaagctg
      481 gagttctacc ttcacatcca cttcgccatc tacctgctca agtactccgg gggcaggccg
      541 gacagacagg agctagatga aaggatttct tatttcaaaa cctacctgga gacaaaaggg
      601 gcctccctga gccagactac ggagtttctt cccttctatg ccctcccctt cgtgcccaat
      661 cctatggtcc acccctcatt taaagagctc ttccaggatt cttggactcc agaattaaag
      721 ctgaagctgg aaaagttttt agctttaatt tttaaagcca gtaacactcc aaagctttta
      781 accatctata aggagaatgg atcgaataac aaagtgccga ctctcttcct agaaatgctg
      841 cagcagctcc accagcagct gctggaggcc gagcgccggg ccatggccta cctgaagcgc
      901 tacaataaga tgcaagccga ctaccacagc ctcatcgggg tcacagccga gctggtggat
      961 tctctggagg ccacggtcag cggcaagatg atcacgcccg agtacctgca gagcgtctgc
     1021 gtccgcctct tcagtaacca gatgcgccag agcctggcac acagtgtgga cttcacaagg
     1081 cctgggacgg cctcaaccat gttacgagca tccttggcac ctgagaagtt gaaggatgtc
     1141 ccattactgc cctccctgga ttatgagaag ctgaagaagg atttgatttg ggggagtgac
     1201 cgcttaaaag ccttcttgtt gcaggctctg cgctggcgct tgaccacatc ccatcccgga
     1261 gagcagaggg agacagtcct gcaagcctac atcagcaatg acctcttgga ttgtcacagc
     1321 cacaaccaga ggagtgtgtt gcaactcctg cactccaaga gcgaggctgt gcggcagtac
     1381 atggccaggc tcgtcaacgc cctggcatcc ctggctgaag gtcgcctcta cctggcccag
     1441 aacacaaagg tgctacggat gctggaggga aggctgaagg aggaagacaa ggatgtcatc
     1501 acgcgtgaga atgtcctcgg ggccttgcag aagttcagcc tcaggcggcc tctgcagacg
     1561 gcgatgattc gagatggcct catcttctgg ctgattgacc tactgaaaga gcccgactgc
     1621 ctgtccgact acacactgga gtactctgtg gctttgctca tgaatctctg tctccgaagt
     1681 gcaggaaaga acatgtgtgc taaggtggca ggactcatgc tgaaagttct ttcggatctc
     1741 cttggccatg aaaaccatga gatccagcca tatgtgaatg gagccctgta cagcatcctg
     1801 tctatcccgt ccattcgtga ggaggccaga gccatgggaa tggaggacat tcttcgatgc
     1861 ttcatcaaag aaggcaatgc cgaaatgatc cgccagatag agtttatcat caagcagctg
     1921 aattccgaag atttactgga tggtgttctt gaatccgatg atgacgagga tgaagatgat
     1981 gaagaggatc atgacatcat ggaggctgac ttggacaaag atgaactgat ccagccccag
     2041 cttggagaac tctcaggcga gaagcttcta accacagagt acttgggaat catgaccaac
     2101 actgggaagg cacggaggaa agggctggcc agtgtgcagt ggagtgggga tgagcccctt
     2161 cgtcggccag tcacccctgg tggccacagg acagggtgcc cagtggtagg agaccatctc
     2221 atttcttccc agaatgccca acaagccaga aatggttgcc cgaggcccat accagtcgct
     2281 cagccagatg actacaaaga gggcaaacga ggtgttgctg ggcgtgccac gccctcgtca
     2341 tttatggacc acaagccaag agagtggcta ccagctggac accaggagtc tcgcttgatc
     2401 cccacagcag ccctcagttg gccaagagag gtgatccagg acccaagcag tggacacacc
     2461 accagggaat tcacaccagc cttcacctac aaggcccaga tacccagtac tccagagacc
     2521 gtggagcaga atccactcaa ggcaaaagca ttgtctctgg cccctcagtt ctcctcaagt
     2581 ggcccccagc aggccagacg cccggcttcc ccagcatctt ccacgagggc ctgcacagca
     2641 gccagtccgt caggaaatga agatggcttc cttcccaagc tatagtccga ggacccatca
     2701 gcttccgcct ctccaccagc caacagctgc aggtgatgga tgtgaagaga cacttgtctc
     2761 catgatcctg ggtagctgag aatcctggag tgccagccct gcaggctgcc ctggagttga
     2821 agccctacca tctgggcacc atctcctcag acagagccat ggcaagaggg ttgggagagg
     2881 cctggactgc cctcctggtg agaggagttc ccttgtcacc ctttgcaccc agaggagaaa
     2941 agctaggtag ctttggatgg gggtggcaaa ttctggactc aagcttccct gtccttcata
     3001 gattccaagc tagacacaaa gccaccccag ggagaacagt atcatccaga ctgagaagga
     3061 tgtgccagga gtcttttccc agatgcctgg ccaggatact tggtgaaagg tggccccaca
     3121 cttctcatgt gaaccaacca caatcaagtg aggaggacag ggagcccatt ctccaggcat
     3181 aaccttcagc tgcctctaaa caagtcgtcc tcaaacagca gggactgaat atcagacatc
     3241 ctgcatatca atatttacgt tacaattcgg taaaattaca cttatgaaat aacaatgaaa
     3301 ataattttag tttgggttgg gagtcactac aacacagaga actctattaa agggtcacag
     3361 cattaggaag gttggaacca ctgccgtaaa ccttgctaaa gattataaat tcgcaggtga
     3421 gaatacggtc acaccgctca tgtacaaagt tctaaaaaaa aaaaatcaat ttaaagacaa
     3481 gaatatgctg cgggcccaag gatgtaactc atggggaaca gcacttgcct aatgggcaca
     3541 aagccctggt ctccatcttt agtaccacag aaaccatagg ctgtgctgac cacctgccat
     3601 tcagcacaag gaaggtcatc ctgtgctaca tagtgagtct gaggccaacc tgggctacat
     3661 gagacctgtc ttttaaaaga agaatgtggt atgatctagc ctacaagaat agactccatt
     3721 tcctcagacg gttgtctggg tttgttggtt tttatttcat gtcatgttta tgagtgcttt
     3781 gtctatatct gtgtatgtgc tcgtgtgtgc ctgatgccca cggaggccag aaggtctcag
     3841 aagctcttgc actggagtta agagccattg tgggctgaga agaatctgca agagcaacag
     3901 attctccgaa ccactgagcc atcgcttggc tcttcttcac agttttatag actttaacca
     3961 gtctgcctcc tgacccctgg cagtcacacc tccatcactc cagaaataca tgcctccctc
     4021 tctgctctga ggaagaaggc tgtgagctaa gggcccgaag caccctctga cctcccagct
     4081 ccgcctgtgg gtgcccaaag taactgggcc tgaagtataa tagagagatg cggcaggcag
     4141 agggctctgg aacggagtgg ctctgggatg aaatctgggg atgaatttca aaggagggtc
     4201 atgaagaagg cactccaccc accagccaag attcctcagg tgccagtgcc tggcacagcc
     4261 tttccctgcc tggtgtggga gcagcagaca cctaggctgg ggagagttgt cttttcaggc
     4321 ccctggaatg aaggcaacag ctgtgtctcc ctcaagcctg cagctgagcg gaagtcagat
     4381 ggcttacatc tgtctggtcc ttcagagaga caggggagtc ttgcataggc ccagcacact
     4441 gacatcacca agcaaggtgt gagtcgttct ctgagaaatt aagcatcacc caggcttttt
     4501 accgtgctcc cagcacacat tctgaaactg aaactcggaa ttgtcctgtt tttattaggg
     4561 ttttcctgtg taacccaggc tggcctggaa cttgctatag ttcacgctgt cttcaaactc
     4621 cggatccaac agccacatgc tttcttaaag aacattgcca actagggact agagaggtgg
     4681 ctccatggtt aagtgtgtcc tcttcccaca gagaatctca acaccagcac cgctgttccg
     4741 tctcctacac agacacatac gaaaaaataa aataaacctt tgacagcttt ttttacaaat
     4801 aa
//
