LOCUS       NM_001398574            4720 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus armadillo repeat containing 9 (Armc9), transcript
            variant 2, mRNA.
ACCESSION   NM_001398574 XM_039083410
VERSION     NM_001398574.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4720)
  AUTHORS   Breslow,D.K., Hoogendoorn,S., Kopp,A.R., Morgens,D.W., Vu,B.K.,
            Kennedy,M.C., Han,K., Li,A., Hess,G.T., Bassik,M.C., Chen,J.K. and
            Nachury,M.V.
  TITLE     A CRISPR-based screen for Hedgehog signaling provides insights into
            ciliary function and ciliopathies
  JOURNAL   Nat Genet 50 (3), 460-471 (2018)
   PUBMED   29459677
REFERENCE   2  (bases 1 to 4720)
  AUTHORS   Van De Weghe,J.C., Rusterholz,T.D.S., Latour,B., Grout,M.E.,
            Aldinger,K.A., Shaheen,R., Dempsey,J.C., Maddirevula,S.,
            Cheng,Y.H., Phelps,I.G., Gesemann,M., Goel,H., Birk,O.S.,
            Alanzi,T., Rawashdeh,R., Khan,A.O., Bamshad,M.J., Nickerson,D.A.,
            Neuhauss,S.C.F., Dobyns,W.B., Alkuraya,F.S., Roepman,R.,
            Bachmann-Gagescu,R. and Doherty,D.
  CONSRTM   University of Washington Center for Mendelian Genomics
  TITLE     Mutations in ARMC9, which Encodes a Basal Body Protein, Cause
            Joubert Syndrome in Humans and Ciliopathy Phenotypes in Zebrafish
  JOURNAL   Am J Hum Genet 101 (1), 23-36 (2017)
   PUBMED   28625504
REFERENCE   3  (bases 1 to 4720)
  AUTHORS   Gonzales,P.A., Pisitkun,T., Hoffert,J.D., Tchapyjnikov,D.,
            Star,R.A., Kleta,R., Wang,N.S. and Knepper,M.A.
  TITLE     Large-scale proteomics and phosphoproteomics of urinary exosomes
  JOURNAL   J Am Soc Nephrol 20 (2), 363-379 (2009)
   PUBMED   19056867
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Dec 20, 2021 this sequence version replaced XM_039083410.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643296.24802.1,
                                           SRR26643287.23147.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-85                JAXUCZ010000009.1  94250859-94250943
            86-173              JAXUCZ010000009.1  94254220-94254307
            174-302             JAXUCZ010000009.1  94256574-94256702
            303-473             JAXUCZ010000009.1  94258811-94258981
            474-629             JAXUCZ010000009.1  94261126-94261281
            630-722             JAXUCZ010000009.1  94266965-94267057
            723-747             JAXUCZ010000009.1  94268313-94268337
            748-905             JAXUCZ010000009.1  94272547-94272704
            906-1004            JAXUCZ010000009.1  94275532-94275630
            1005-1039           JAXUCZ010000009.1  94286675-94286709
            1040-1151           JAXUCZ010000009.1  94289869-94289980
            1152-1244           JAXUCZ010000009.1  94292352-94292444
            1245-1335           JAXUCZ010000009.1  94297915-94298005
            1336-1459           JAXUCZ010000009.1  94299593-94299716
            1460-1599           JAXUCZ010000009.1  94301476-94301615
            1600-1676           JAXUCZ010000009.1  94303041-94303117
            1677-1751           JAXUCZ010000009.1  94305564-94305638
            1752-1842           JAXUCZ010000009.1  94310833-94310923
            1843-1898           JAXUCZ010000009.1  94316774-94316829
            1899-2003           JAXUCZ010000009.1  94343629-94343733
            2004-2119           JAXUCZ010000009.1  94351171-94351286
            2120-2256           JAXUCZ010000009.1  94356343-94356479
            2257-2383           JAXUCZ010000009.1  94361452-94361578
            2384-2555           JAXUCZ010000009.1  94373130-94373301
            2556-4720           JAXUCZ010000009.1  94374425-94376589
FEATURES             Location/Qualifiers
     source          1..4720
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q35"
     gene            1..4720
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /note="armadillo repeat containing 9"
                     /db_xref="GeneID:301579"
                     /db_xref="RGD:1305615"
     exon            1..85
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            86..173
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     CDS             123..2603
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /note="isoform 2 is encoded by transcript variant 2; lisH
                     domain-containing protein ARMC9"
                     /codon_start=1
                     /product="lisH domain-containing protein ARMC9 isoform 2"
                     /protein_id="NP_001385503.1"
                     /db_xref="GeneID:301579"
                     /db_xref="RGD:1305615"
                     /translation="MGDVLAHESELLGLVKEYLDFAEFEDTLKTFSKECKVKGKPLCK
                     TVGGSLKKDSNSLMIQKDLVAAFDSGDQKLFFDLWEGHIPSSIRDTDSLAQKLEFYLH
                     IHFAIYLLKYSGGRPDRQELDERISYFKTYLETKGASLSQTTEFLPFYALPFVPNPMV
                     HPSFKELFQDSWTPELKLKLEKFLALIFKASNTPKLLTIYKENGSNNKEMLQQLHQQL
                     LEAERRAMAYLKRYNKMQADYHSLIGVTAELVDSLEATVSGKMITPEYLQSVCVRLFS
                     NQMRQSLAHSVDFTRPGTASTMLRASLAPEKLKDVPLLPSLDYEKLKKDLIWGSDRLK
                     AFLLQALRWRLTTSHPGEQRETVLQAYISNDLLDCHSHNQRSVLQLLHSKSEAVRQYM
                     ARLVNALASLAEGRLYLAQNTKVLRMLEGRLKEEDKDVITRENVLGALQKFSLRRPLQ
                     TAMIRDGLIFWLIDLLKEPDCLSDYTLEYSVALLMNLCLRSAGKNMCAKVAGLMLKVL
                     SDLLGHENHEIQPYVNGALYSILSIPSIREEARAMGMEDILRCFIKEGNAEMIRQIEF
                     IIKQLNSEDLLDGVLESDDDEDEDDEEDHDIMEADLDKDELIQPQLGELSGEKLLTTE
                     YLGIMTNTGKARRKGLASVQWSGDEPLRRPVTPGGHRTGCPVVGDHLISSQNAQQARN
                     GCPRPIPVAQPDDYKEGKRGVAGRATPSSSVMDHKPREWLPAGHQESRLIPTAALSWP
                     REVIQDPSSGHTTREFTPAFTYKAQIPSTPETVEQNPLKAKALSLAPQFSSSGPQQAR
                     RPASPASSTRACTAASPSGNEDGFLPKL"
     exon            174..302
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            303..473
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            474..629
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            630..722
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            723..747
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            748..905
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            906..1004
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            1005..1039
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            1040..1151
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            1152..1244
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            1245..1335
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            1336..1459
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            1460..1599
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            1600..1676
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            1677..1751
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            1752..1842
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            1843..1898
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            1899..2003
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            2004..2119
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            2120..2256
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            2257..2383
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            2384..2555
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
     exon            2556..4720
                     /gene="Armc9"
                     /gene_synonym="RGD1305615"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acgtgacttc ggataggtag cggttgccga ggtgacagca ggcgagctgg cggtctggag
       61 gagtgagagc acagccccgc agcagagatt tctgctgtga gaattaccag taacagttca
      121 ctatggggga tgtcctggct cacgagtctg aattacttgg actagtgaaa gagtatttag
      181 attttgctga atttgaagac accttgaaga cattttcaaa agaatgcaaa gtaaaaggaa
      241 agccactatg taaaactgtc ggtgggtcac taaagaagga ctccaactca ctgatgatcc
      301 agaaggattt ggtggcggcg tttgacagtg gagaccagaa gttgttcttc gatttgtggg
      361 agggacacat tcccagctcc atcagagaca ccgactccct ggctcagaag ctggagttct
      421 accttcacat ccacttcgcc atctacctgc tcaagtactc cgggggcagg ccggacagac
      481 aggagctaga tgaaaggatt tcttatttca aaacctacct ggagacaaaa ggggcctccc
      541 tgagccagac tacggagttt cttcccttct atgccctccc cttcgtgccc aatcctatgg
      601 tccacccctc atttaaagag ctcttccagg attcttggac tccagaatta aagctgaagc
      661 tggaaaagtt tttagcttta atttttaaag ccagtaacac tccaaagctt ttaaccatct
      721 ataaggagaa tggatcgaat aacaaagaaa tgctgcagca gctccaccag cagctgctgg
      781 aggccgagcg ccgggccatg gcctacctga agcgctacaa taagatgcaa gccgactacc
      841 acagcctcat cggggtcaca gccgagctgg tggattctct ggaggccacg gtcagcggca
      901 agatgatcac gcccgagtac ctgcagagcg tctgcgtccg cctcttcagt aaccagatgc
      961 gccagagcct ggcacacagt gtggacttca caaggcctgg gacggcctca accatgttac
     1021 gagcatcctt ggcacctgag aagttgaagg atgtcccatt actgccctcc ctggattatg
     1081 agaagctgaa gaaggatttg atttggggga gtgaccgctt aaaagccttc ttgttgcagg
     1141 ctctgcgctg gcgcttgacc acatcccatc ccggagagca gagggagaca gtcctgcaag
     1201 cctacatcag caatgacctc ttggattgtc acagccacaa ccagaggagt gtgttgcaac
     1261 tcctgcactc caagagcgag gctgtgcggc agtacatggc caggctcgtc aacgccctgg
     1321 catccctggc tgaaggtcgc ctctacctgg cccagaacac aaaggtgcta cggatgctgg
     1381 agggaaggct gaaggaggaa gacaaggatg tcatcacgcg tgagaatgtc ctcggggcct
     1441 tgcagaagtt cagcctcagg cggcctctgc agacggcgat gattcgagat ggcctcatct
     1501 tctggctgat tgacctactg aaagagcccg actgcctgtc cgactacaca ctggagtact
     1561 ctgtggcttt gctcatgaat ctctgtctcc gaagtgcagg aaagaacatg tgtgctaagg
     1621 tggcaggact catgctgaaa gttctttcgg atctccttgg ccatgaaaac catgagatcc
     1681 agccatatgt gaatggagcc ctgtacagca tcctgtctat cccgtccatt cgtgaggagg
     1741 ccagagccat gggaatggag gacattcttc gatgcttcat caaagaaggc aatgccgaaa
     1801 tgatccgcca gatagagttt atcatcaagc agctgaattc cgaagattta ctggatggtg
     1861 ttcttgaatc cgatgatgac gaggatgaag atgatgaaga ggatcatgac atcatggagg
     1921 ctgacttgga caaagatgaa ctgatccagc cccagcttgg agaactctca ggcgagaagc
     1981 ttctaaccac agagtacttg ggaatcatga ccaacactgg gaaggcacgg aggaaagggc
     2041 tggccagtgt gcagtggagt ggggatgagc cccttcgtcg gccagtcacc cctggtggcc
     2101 acaggacagg gtgcccagtg gtaggagacc atctcatttc ttcccagaat gcccaacaag
     2161 ccagaaatgg ttgcccgagg cccataccag tcgctcagcc agatgactac aaagagggca
     2221 aacgaggtgt tgctgggcgt gccacgccct cgtcatcagt tatggaccac aagccaagag
     2281 agtggctacc agctggacac caggagtctc gcttgatccc cacagcagcc ctcagttggc
     2341 caagagaggt gatccaggac ccaagcagtg gacacaccac cagggaattc acaccagcct
     2401 tcacctacaa ggcccagata cccagtactc cagagaccgt ggagcagaat ccactcaagg
     2461 caaaagcatt gtctctggcc cctcagttct cctcaagtgg cccccagcag gccagacgcc
     2521 cggcttcccc agcatcttcc acgagggcct gcacagcagc cagtccgtca ggaaatgaag
     2581 atggcttcct tcccaagcta tagtccgagg acccatcagc ttccgcctct ccaccagcca
     2641 acagctgcag gtgatggatg tgaagagaca cttgtctcca tgatcctggg tagctgagaa
     2701 tcctggagtg ccagccctgc aggctgccct ggagttgaag ccctaccatc tgggcaccat
     2761 ctcctcagac agagccatgg caagagggtt gggagaggcc tggactgccc tcctggtgag
     2821 aggagttccc ttgtcaccct ttgcacccag aggagaaaag ctaggtagct ttggatgggg
     2881 gtggcaaatt ctggactcaa gcttccctgt ccttcataga ttccaagcta gacacaaagc
     2941 caccccaggg agaacagtat catccagact gagaaggatg tgccaggagt cttttcccag
     3001 atgcctggcc aggatacttg gtgaaaggtg gccccacact tctcatgtga accaaccaca
     3061 atcaagtgag gaggacaggg agcccattct ccaggcataa ccttcagctg cctctaaaca
     3121 agtcgtcctc aaacagcagg gactgaatat cagacatcct gcatatcaat atttacgtta
     3181 caattcggta aaattacact tatgaaataa caatgaaaat aattttagtt tgggttggga
     3241 gtcactacaa cacagagaac tctattaaag ggtcacagca ttaggaaggt tggaaccact
     3301 gccgtaaacc ttgctaaaga ttataaattc gcaggtgaga atacggtcac accgctcatg
     3361 tacaaagttc taaaaaaaaa aaatcaattt aaagacaaga atatgctgcg ggcccaagga
     3421 tgtaactcat ggggaacagc acttgcctaa tgggcacaaa gccctggtct ccatctttag
     3481 taccacagaa accataggct gtgctgacca cctgccattc agcacaagga aggtcatcct
     3541 gtgctacata gtgagtctga ggccaacctg ggctacatga gacctgtctt ttaaaagaag
     3601 aatgtggtat gatctagcct acaagaatag actccatttc ctcagacggt tgtctgggtt
     3661 tgttggtttt tatttcatgt catgtttatg agtgctttgt ctatatctgt gtatgtgctc
     3721 gtgtgtgcct gatgcccacg gaggccagaa ggtctcagaa gctcttgcac tggagttaag
     3781 agccattgtg ggctgagaag aatctgcaag agcaacagat tctccgaacc actgagccat
     3841 cgcttggctc ttcttcacag ttttatagac tttaaccagt ctgcctcctg acccctggca
     3901 gtcacacctc catcactcca gaaatacatg cctccctctc tgctctgagg aagaaggctg
     3961 tgagctaagg gcccgaagca ccctctgacc tcccagctcc gcctgtgggt gcccaaagta
     4021 actgggcctg aagtataata gagagatgcg gcaggcagag ggctctggaa cggagtggct
     4081 ctgggatgaa atctggggat gaatttcaaa ggagggtcat gaagaaggca ctccacccac
     4141 cagccaagat tcctcaggtg ccagtgcctg gcacagcctt tccctgcctg gtgtgggagc
     4201 agcagacacc taggctgggg agagttgtct tttcaggccc ctggaatgaa ggcaacagct
     4261 gtgtctccct caagcctgca gctgagcgga agtcagatgg cttacatctg tctggtcctt
     4321 cagagagaca ggggagtctt gcataggccc agcacactga catcaccaag caaggtgtga
     4381 gtcgttctct gagaaattaa gcatcaccca ggctttttac cgtgctccca gcacacattc
     4441 tgaaactgaa actcggaatt gtcctgtttt tattagggtt ttcctgtgta acccaggctg
     4501 gcctggaact tgctatagtt cacgctgtct tcaaactccg gatccaacag ccacatgctt
     4561 tcttaaagaa cattgccaac tagggactag agaggtggct ccatggttaa gtgtgtcctc
     4621 ttcccacaga gaatctcaac accagcaccg ctgttccgtc tcctacacag acacatacga
     4681 aaaaataaaa taaacctttg acagcttttt ttacaaataa
//
