LOCUS       NM_001173354            4447 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus armadillo repeat containing 8 (Armc8), mRNA.
ACCESSION   NM_001173354 XM_002727126 XM_236599
VERSION     NM_001173354.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4447)
  AUTHORS   Lampert,F., Stafa,D., Goga,A., Soste,M.V., Gilberto,S., Olieric,N.,
            Picotti,P., Stoffel,M. and Peter,M.
  TITLE     The multi-subunit GID/CTLH E3 ubiquitin ligase promotes cell
            proliferation and targets the transcription factor Hbp1 for
            degradation
  JOURNAL   Elife 7, e35528 (2018)
   PUBMED   29911972
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4447)
  AUTHORS   Kobayashi,N., Yang,J., Ueda,A., Suzuki,T., Tomaru,K., Takeno,M.,
            Okuda,K. and Ishigatsubo,Y.
  TITLE     RanBPM, Muskelin, p48EMLP, p44CTLH, and the armadillo-repeat
            proteins ARMC8alpha and ARMC8beta are components of the CTLH
            complex
  JOURNAL   Gene 396 (2), 236-247 (2007)
   PUBMED   17467196
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Feb 10, 2021 this sequence version replaced NM_001173354.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC168192.1, SRR26360176.1017659.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMN12840105 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-135               JAXUCZ010000008.1  109010583-109010717 c
            136-212             JAXUCZ010000008.1  108990740-108990816 c
            213-284             JAXUCZ010000008.1  108975407-108975478 c
            285-427             JAXUCZ010000008.1  108974552-108974694 c
            428-525             JAXUCZ010000008.1  108974078-108974175 c
            526-618             JAXUCZ010000008.1  108971432-108971524 c
            619-699             JAXUCZ010000008.1  108967959-108968039 c
            700-775             JAXUCZ010000008.1  108965711-108965786 c
            776-866             JAXUCZ010000008.1  108965523-108965613 c
            867-927             JAXUCZ010000008.1  108963952-108964012 c
            928-1128            JAXUCZ010000008.1  108961630-108961830 c
            1129-1224           JAXUCZ010000008.1  108958907-108959002 c
            1225-1307           JAXUCZ010000008.1  108943618-108943700 c
            1308-1389           JAXUCZ010000008.1  108943233-108943314 c
            1390-1476           JAXUCZ010000008.1  108940781-108940867 c
            1477-1569           JAXUCZ010000008.1  108937702-108937794 c
            1570-1719           JAXUCZ010000008.1  108935730-108935879 c
            1720-1815           JAXUCZ010000008.1  108934531-108934626 c
            1816-1911           JAXUCZ010000008.1  108927085-108927180 c
            1912-1984           JAXUCZ010000008.1  108923291-108923363 c
            1985-2078           JAXUCZ010000008.1  108922421-108922514 c
            2079-4447           JAXUCZ010000008.1  108916274-108918642 c
FEATURES             Location/Qualifiers
     source          1..4447
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q31"
     gene            1..4447
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /note="armadillo repeat containing 8"
                     /db_xref="GeneID:315949"
                     /db_xref="RGD:1310477"
     exon            1..135
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     CDS             91..2112
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /codon_start=1
                     /product="armadillo repeat-containing protein 8"
                     /protein_id="NP_001166825.1"
                     /db_xref="GeneID:315949"
                     /db_xref="RGD:1310477"
                     /translation="MACLLETPIRMSVLSEVTASSRHYVDRLFDPDPQKVLQGVIDMK
                     NAVIGNNKQKANLIVLGAVPRLLYLLQQEASSTELKTECAVVLGSLAMGTENNVKSLL
                     DCHIIPALLQGLLSPDLKFIEACLRCLRTIFTSPVTPEELLYTDATVIPHLMALLSRS
                     RYTQEYICQIFSHCCKGPDHQTILFNHGAVQNIAHLLTSPSYKVRMQALKCFSVLAFE
                     NPQVSMTLVNVLVDGELLPQIFVKMLQRDKPIEMQLTSAKCLTYMCRAGAIRTDDSCI
                     VLKTLPCLVRMCSKERLLEERVEGAETLAYLIEPDVELQRIASITDHLIAMLADYFKY
                     PSSVSAITDIKRLDHDLKHAHELRQAAFKLYASLGANDEDIRKKIIETENMMDRIVTG
                     LSESSVKVRLAAVRCLHSLSRSVQQLRTSFQDHAVWKPLMKVLQNAPDEILVVASSML
                     CNLLLEFSPSKEPILESGAVELLCGLTQSENPALRVNGIWALMNMAFQAEQKIKADIL
                     RSLSTEQLFRLLSDSDMNVLMKTLGLLRNLLSTRPHIDKIMSTHGKQIMQAVTLILEG
                     EHSMEVKEQTLCILANIADGTTAKELIMTNDDILQKIKYYMGHSHVKLQLAAMFCISN
                     LIWNEEEGSQERQDKLRDMGIVDILHKLSQSTDSNLCDKAKTALQQYLA"
     exon            136..212
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            213..284
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            285..427
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            428..525
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            526..618
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            619..699
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            700..775
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            776..866
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            867..927
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            928..1128
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            1129..1224
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            1225..1307
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            1308..1389
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            1390..1476
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            1477..1569
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            1570..1719
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            1720..1815
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            1816..1911
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            1912..1984
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            1985..2078
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
     exon            2079..4447
                     /gene="Armc8"
                     /gene_synonym="RGD1310477"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acagaggcgc cggctgctgg tcccataggt ggctgtcgaa agtgccggcc gcgcgccggc
       61 gccggcagca gccgggtggg aaggctcaag atggcgtgcc tgttggagac cccaatccgc
      121 atgagcgtcc tctcggaggt aacagctagc agtcgccact atgttgacag gctatttgac
      181 cctgatcccc agaaagttct ccaaggtgtc atagacatga aaaatgctgt aattggaaac
      241 aataaacaga aagcaaacct catcgttcta ggagctgtcc cgagattgtt gtatttgctc
      301 caacaagaag cctcaagcac agagctgaaa actgagtgtg cagtggtgtt agggagcctt
      361 gcgatgggca cagaaaacaa tgtcaagtct ctgctagact gccatatcat ccctgcctta
      421 ctacaaggac tactgtcccc agacctgaag ttcattgaag cttgcctccg atgcctacgg
      481 acaatcttca ccagtcctgt cactccagag gaactattgt atacagacgc cacagtgata
      541 ccacacctca tggcgctgct gagtaggtcc cgctacaccc aggagtatat ctgccagatc
      601 ttctcacact gttgcaaagg accagatcat caaacaattt tgtttaacca tggggcagtg
      661 cagaacattg ctcatctgct gacctcaccc tcttacaaag ttcgaatgca agctctgaaa
      721 tgcttctcag tgttagcctt tgagaatccc caggtatcga tgaccctggt aaacgttttg
      781 gttgatgggg aattgttacc acagatattt gtgaagatgt tacagaggga taagcctatt
      841 gagatgcagc tcacatcagc aaaatgttta acttacatgt gcagagcggg agcaatccgg
      901 acagatgaca gctgtattgt attaaaaact ttgccttgtt tggttcgaat gtgcagtaag
      961 gagagattac tagaggagag agttgaagga gctgagaccc tcgcctatct gattgagcca
     1021 gacgttgagc tgcagagaat cgctagcata accgatcacc tcattgccat gctggctgac
     1081 tatttcaagt accccagctc agtgagtgcc atcactgata ttaaaaggct tgatcacgac
     1141 ttaaaacatg cccatgaact ccgccaggct gcattcaagc tctatgcctc tctcggagca
     1201 aatgatgaag acatccggaa gaagatcatt gagactgaaa atatgatgga ccgaattgtg
     1261 actggcttgt ctgagtctag tgtcaaggtg cggttagctg ctgtcagatg tttgcacagt
     1321 ttatccagat ctgtacagca gcttcgaacc agtttccagg atcatgcggt gtggaaacct
     1381 ttgatgaagg ttttacaaaa cgcacctgat gaaatcctag tagtagcgtc ttccatgtta
     1441 tgtaaccttc ttcttgaatt ttctccaagt aaagagccaa ttttggaatc aggagctgtt
     1501 gagctgctct gtgggttgac acagagtgaa aaccccgctc tgcgagtgaa cgggatttgg
     1561 gctttaatga atatggcatt tcaggcagaa caaaaaataa aagcagatat tttacgaagt
     1621 ttgagtactg aacagctatt ccggttatta tcagattctg atatgaatgt gttgatgaag
     1681 acattgggac ttcttagaaa tctcctctct actcggcctc acatagataa aataatgagt
     1741 actcacggaa agcagattat gcaggctgtc accctgattc tggaagggga gcatagcatg
     1801 gaagtcaaag agcagacact gtgcatccta gccaacattg cagatgggac aacagcaaaa
     1861 gagcttatta tgaccaatga tgacatcctg cagaaaatca aatactatat gggtcattcg
     1921 catgtcaaac tgcagcttgc cgccatgttt tgtatatcaa acctcatatg gaatgaagag
     1981 gaaggttcac aggaacgcca ggataaatta cgagacatgg ggattgtaga tattttacac
     2041 aaactgagtc agtcgacaga ctccaacctc tgtgacaagg cgaagacggc gctgcagcag
     2101 tacctggcgt gacggagagc cccgggcacc tgcgagcacc ccagctttgt gaaaggaagt
     2161 acaggagctc gtctcatttg actccttcta tttgcacacg tcaccttgga ctgcagggag
     2221 ctgttttgca aagcaattta gtaggcttag atctcaaatt catcttgaga gcatttttga
     2281 ggtagtaatt tcctcagagg actgttgtgt tttgttgttg ttttctgagc tacctggact
     2341 ctttattaga acaatcaatc atttcctttg gacctacaat tttttgccta tgctgcagcc
     2401 actttgtgag caagaatgag tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
     2461 tgtgtgtgtg tgtgtatgca cacacacggc agtcagaatg agtgaccatg tgggtgaggg
     2521 atacctcaga tttttctttt cttattttgt gtgaaaatct cttttctaca gattttccag
     2581 ggtttaagca ttgcttgctg tataaaaaaa attactgaat tatatacagt ttgaatgaaa
     2641 tgttatttta aaagcaaaac aattgtttag tgttccataa aagttatgtt gaattttggt
     2701 cagatgaata tttgtaagta aaaaaatata tgcatttctg aacctcaact tacatagatt
     2761 ttctttataa aaacaaaaaa aaaaagacaa aaaagacaaa gaaaaagttg gctacagttt
     2821 gcctgagtaa caggcgctgt gcatggtgct gtgcagatag taagctagca tcttactgcc
     2881 atcgatatta gcaggtacaa aacctttggg ttttgtttta ttttgttctg tttttttttt
     2941 ttttcctagc ataattaaat aagttctcag gcttccaagt cagaaggctg gtgaaataga
     3001 gcaaagtgag gaacggtcac cgtaggcttg gaaacatcga tgggagagag aggacgatag
     3061 tggaagccta gcgaggacca ggtgggctgg ctttgacagg actgggatga aagcctcccg
     3121 gcgtccctcg atcctatcat tagggtgaca gtatcggaag gatctcagag caaacctgga
     3181 tagcaggttg ccacttcctg gagacaagcc ggatcaccag gtgcttcctg cagcagtgtg
     3241 tgctgctggg agactggctt gttctgcaaa cgtcctagga agcttctata aagccacctc
     3301 ttaagtgtcc cagaaaaagt catgcagtag caggggactg ccgccctggg ctgcgctcat
     3361 ctagagtgag ataggaagtc ttttcctgaa tgaagctgaa gtacttcatg ttgagaaaag
     3421 ggaagagaat ctccccgtga tgactgaaaa tgcatttttg gggggctggg gggcatctgc
     3481 tttagctggt cccttcaagt gggactcagc agaggtagta gcaaacagcc tgccttcctt
     3541 tgtgggaggc acggcaggca gggtatgcac tgctgggacc cacaccctcc ctccagccac
     3601 tcctgcctga caaggctgct cacctgagag ctggtcgtca ccagcctgca ccttccttgg
     3661 aagccttacg tatggttgat tgcaaatgaa tgttttaaaa tgttgtattt aatgcaatgc
     3721 ttcctgttct ccatatggcc acccaagata caaacatttc caagttgttt tctccagaac
     3781 atcactgact ttaaaagctg tcacaacaga acttgggttt tatgcacatg tcagagtgct
     3841 aatgtgagaa aatctgggaa tggagcctta cccgggccac ttattgccgc tcctggtgct
     3901 aagactgtgc cctttgatag catattgtca caagatgctg cagcatcggt tttagaaagt
     3961 accagtaaat ataaagaaac caattgctga gacaatcgtg aacccaaata gcatgagagg
     4021 gctgacgacc ccttgaactc cgtggataaa tctttcctgt gggtataagc aatggtcaca
     4081 taaaaagtgc tttactctaa ttaatttctg attcgaatga agggaaatgt atttattaaa
     4141 acaaagctgt ttgctgctct atgcaggtgc agtgtttggt cagcaaggaa gcggggagaa
     4201 tggggcatgg ttttatgtct acacccaagt tcttaatgaa gcttctggct ctaatactgc
     4261 attctgttcc tctttttgtg ccctgattgt aacccaaaat ttataaacta gaaaagaatg
     4321 tcaaatttaa taagttgcat ttttttttcc ttaagcactt tattcagaac aatacatgtt
     4381 cttctggtag tgtttggata atatgatttt aacacgtgct aataaaagcc aagaaaagtc
     4441 atggcaa
//
