LOCUS       XM_574794               2951 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus armadillo repeat containing 2 (Armc2),
            transcript variant X1, mRNA.
ACCESSION   XM_574794
VERSION     XM_574794.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_574794.5.
            
            On Aug 7, 2014 this sequence version replaced XM_574794.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2951
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2951
                     /gene="Armc2"
                     /note="armadillo repeat containing 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     ESTs, 4 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 7 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:499470"
                     /db_xref="RGD:1562413"
     CDS             13..2700
                     /gene="Armc2"
                     /codon_start=1
                     /product="armadillo repeat-containing protein 2 isoform
                     X1"
                     /protein_id="XP_574794.3"
                     /db_xref="GeneID:499470"
                     /db_xref="RGD:1562413"
                     /translation="MLRRSALTWTGGEAGFAGSGRAAVRAGGCFYEDHSNLKGKMLSS
                     SEQKLDKLDAFYRLPLAKQKTSAEIISEARNALRTVRTQRPFTPREDQRKLFGPASSR
                     TPENRPPSSFSLHASSFELADPKPISGTRLRPLELKPKAPASPNTEEDANLSFPKAPV
                     DPAKIRRISGARARFYRAASQGTLLPDRSPPAAHSKTPVESRDTVSVGSATAKRNGAH
                     LTASSATRHLKNPPLLPCDQGFRETTEQEASLQPQLGSRGDPGKRRARASSCPSSSDL
                     SRQETRTASRASLQEQEPELEVDETFWKTRIIPILHELEKEEDIEAMCAACTQLHRAL
                     EEARMLGKRFKRRSVLLKALYKLVDAGSDALSLKLAKLILALKVSGKNLLNICKLVFK
                     ISRSEKNDTLMQKDNILQSLLEVLRDEDLQSNTEAFLYCMGALKFISGSPGFLTEMVN
                     KGTVEILVQLIKETTEDTEKHGACLPNSGHLLVQTTATLRNLVDSPLTRSKLLNIGAF
                     PCLCTVMGQHMNDKDICTNIARVFSKLTSYRDCCAALVSYSRCYALFLSLLNKYQKNQ
                     DLVIRIVFILGNLTAKSNQARELFSGESGSVETLLTLFQNFYRLEESSPKLQRSGARP
                     RAEAEDVLVKLTRVLANIAIHPCIGPVLAADPRVVGLLLTTLESKSLGDCEELVINTT
                     AAINNLSFYQVKSSVLQHRKLYVAELLLKLLVSNNMDGILEAVRVFGNLSQDHDVCNF
                     LMQKNVHKFLITLLEAKHQDICFSACGVLLNLTVDKDKRAVLKEGGGIKKLVDCLRDF
                     GPGDWQLACLVCKTLWNFSENITNASECFGDDVTNTLLILLSTFLDEELALDSSFDQD
                     LKSYHRLHWETEFKPVAQELLKRIQSHHTLLEPLPVPSF"
ORIGIN      
        1 ggcaaggtga ggatgctgag gcgctctgcc ctgacctgga ccggtggaga agccggcttt
       61 gcggggagtg ggagagcagc tgtgcgcgcg ggagggtgtt tctatgaaga ccactctaat
      121 ttgaaaggaa agatgctgtc ctccagtgaa cagaagctgg acaagctgga cgccttttat
      181 cgacttccat tggccaaaca gaagacgagt gcagaaatca tcagcgaggc ccgaaatgcc
      241 ttgagaacgg ttagaaccca aaggccattt acaccacgag aagaccaaag gaagctcttc
      301 gggcctgcct catcgagaac cccagaaaac aggcctcctt cgtccttcag cctccatgcc
      361 tccagctttg agttagccga tcccaagcct atctccggga ctcgtctcag gccgcttgag
      421 ctgaaaccca aagctccagc atctcccaac acagaggagg atgccaatct ctccttcccc
      481 aaagctccag tggaccccgc aaagataaga agaataagcg gtgcgcgtgc acgcttctac
      541 agggctgcct cccagggaac gctcctgcct gacagatccc ctcctgctgc ccactcgaag
      601 accccggtgg agtccagaga cactgttagc gtggggagtg ccacagcaaa aaggaatggg
      661 gctcatttaa cagcatcaag tgccacccgc catttaaaga accccccact tcttccctgc
      721 gaccagggct tcagagaaac cacagagcag gaagcgtccc tacagcctca gctcggaagc
      781 agaggggatc ctgggaaacg gcgtgccagg gcctcctcgt gtcctagcag ctcagacctg
      841 agcagacagg aaaccagaac agcctcaaga gccagcttac aggaacagga gccagagcta
      901 gaagtagatg agaccttttg gaaaacacgg atcattccaa ttttgcatga attagagaag
      961 gaagaagata ttgaagcgat gtgtgcggcc tgcacccagc tccatcgcgc gctggaggaa
     1021 gcgcgcatgc tcggaaagag gttcaagaga aggagcgtcc tgctgaaggc gctgtataag
     1081 ctagtggacg ccggctcaga cgcgctcagc ctgaagctcg caaagcttat cctagcactt
     1141 aaagtgagtg gaaagaacct tcttaacatc tgcaaactgg tatttaaaat cagcaggagc
     1201 gagaagaatg acaccctgat gcagaaggac aacattctgc aatctctact ggaggtactg
     1261 agagacgaag acctgcaaag taacaccgag gcttttctct actgcatggg ggctctgaaa
     1321 ttcatttccg gaagtccagg attccttacc gagatggtca acaaaggcac ggtggaaata
     1381 ttggtgcagt taataaagga aacgactgag gacacagaga agcatggcgc gtgcctgccg
     1441 aattctggcc acttgctagt ccagacaact gctaccttga gaaacttggt cgattcacca
     1501 ctgacaagga gcaaactcct gaacatcggg gcctttccct gtctctgcac agtgatggga
     1561 cagcacatga acgacaagga catctgtacc aacatcgcca gagtctttag caaactaacc
     1621 tcttaccgtg actgctgtgc ggccctggtc agctattcca gatgttacgc cttgtttcta
     1681 agtctattga acaaatacca gaagaaccag gacttagtaa ttcgaattgt ttttatcctt
     1741 ggcaacctga cagcgaaaag taaccaggcc cgggaactgt tctccggaga gagtgggagc
     1801 gtggaaactc tgctcacact gttccagaac ttctaccgac ttgaggagag ctcaccaaag
     1861 ctgcagcgtt caggagccag gccacgggca gaggccgagg acgtgctggt caagctgacc
     1921 cgtgtccttg ccaacatagc cattcaccct tgcatcggcc cagtgctagc cgccgaccct
     1981 cgggtggtgg gcctgttgct gacaaccctg gaatcgaagt cactgggcga ctgtgaggag
     2041 ctggtgatca acaccacagc agccatcaac aatctgtcct tttaccaagt gaagagctct
     2101 gtcctgcaac acagaaagct gtatgttgct gaattgctct taaagctcct tgtgagcaac
     2161 aacatggatg ggatcctgga ggctgtgcgt gtctttggaa atctctccca ggaccatgac
     2221 gtctgcaatt tcctcatgca gaaaaatgta cacaagttct tgatcacatt gctggaagcc
     2281 aagcaccaag acatttgctt ctctgcctgc ggggtcctcc tgaatctcac ggtggataag
     2341 gataagcgag cggtgctcaa agaaggcggt ggcattaaaa agttagtgga ttgtttgaga
     2401 gatttcggtc ctggtgactg gcagctggcc tgcctggtgt gcaagacctt gtggaacttc
     2461 agtgaaaaca tcaccaacgc ttccgagtgt tttggagatg acgtcaccaa cacactcctc
     2521 atcctcttgt cgacgttttt agatgaagaa ctagccctgg atagcagttt tgatcaagac
     2581 ttaaaaagtt accacagact ccactgggag acggaattca agcccgtggc acaggaactt
     2641 ctaaagcgca tccagagtca ccacacgctc ctggagcccc tgcccgtccc ttctttctaa
     2701 catgacgcac tcaaggcaga accgggaggt cagatctccc tccttctcgg gaaatggtaa
     2761 aagcacgaaa gcttttcagt attcacacac gtcgagcgtt tttaaagtac tgattttagc
     2821 gagtagccta agtattttga aagaaataag catttctttt tctaggaatt acagaaaaca
     2881 gatatatata tatatatata tatattttct gctatgcgag gtatgagatg gaaatatatg
     2941 catttctaag a
//
