LOCUS       NM_001106425            2973 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus armadillo repeat containing 1 (Armc1), mRNA.
ACCESSION   NM_001106425 XM_001055081 XM_215537
VERSION     NM_001106425.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2973)
  AUTHORS   Pagliarini,D.J., Calvo,S.E., Chang,B., Sheth,S.A., Vafai,S.B.,
            Ong,S.E., Walford,G.A., Sugiana,C., Boneh,A., Chen,W.K., Hill,D.E.,
            Vidal,M., Evans,J.G., Thorburn,D.R., Carr,S.A. and Mootha,V.K.
  TITLE     A mitochondrial protein compendium elucidates complex I disease
            biology
  JOURNAL   Cell 134 (1), 112-123 (2008)
   PUBMED   18614015
REFERENCE   2  (bases 1 to 2973)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Mar 9, 2021 this sequence version replaced NM_001106425.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158721.1, SRR26643288.9040.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-188               JAXUCZ010000002.1  103568168-103568355 c
            189-409             JAXUCZ010000002.1  103560808-103561028 c
            410-501             JAXUCZ010000002.1  103551965-103552056 c
            502-691             JAXUCZ010000002.1  103546098-103546287 c
            692-808             JAXUCZ010000002.1  103527179-103527295 c
            809-883             JAXUCZ010000002.1  103527020-103527094 c
            884-2973            JAXUCZ010000002.1  103524333-103526422 c
FEATURES             Location/Qualifiers
     source          1..2973
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q24"
     gene            1..2973
                     /gene="Armc1"
                     /gene_synonym="RGD1560393"
                     /note="armadillo repeat containing 1"
                     /db_xref="GeneID:294948"
                     /db_xref="RGD:1560393"
     exon            1..188
                     /gene="Armc1"
                     /gene_synonym="RGD1560393"
                     /inference="alignment:Splign:2.1.0"
     exon            189..409
                     /gene="Armc1"
                     /gene_synonym="RGD1560393"
                     /inference="alignment:Splign:2.1.0"
     CDS             227..1075
                     /gene="Armc1"
                     /gene_synonym="RGD1560393"
                     /codon_start=1
                     /product="armadillo repeat-containing protein 1"
                     /protein_id="NP_001099895.2"
                     /db_xref="GeneID:294948"
                     /db_xref="RGD:1560393"
                     /translation="MNSSSSTVNEEPDALSVVNQLRDLAADPLNRRAIVQDQGCLPGL
                     ILFMDHPNPSVVHSALLALRYLAECRANREKMKGELGMMLSLQNVIQKTTTPGETKLL
                     ASEIYDILQSSNMADGDSFNEINSRRRKAQFFLGTTNKRAKTVVLHIDGLDDTSRRNL
                     CEEALLKIKGVISFTFQMAVQRCVVRIRSDLKAEALASAIASTKVMKAQQVVKSESGE
                     EMLVPFQDAPVEVEENTELPDYLPEDESPTKEQDKAVSRVGSHPEGGASWLSTAANFL
                     SRSFYW"
     exon            410..501
                     /gene="Armc1"
                     /gene_synonym="RGD1560393"
                     /inference="alignment:Splign:2.1.0"
     exon            502..691
                     /gene="Armc1"
                     /gene_synonym="RGD1560393"
                     /inference="alignment:Splign:2.1.0"
     exon            692..808
                     /gene="Armc1"
                     /gene_synonym="RGD1560393"
                     /inference="alignment:Splign:2.1.0"
     exon            809..883
                     /gene="Armc1"
                     /gene_synonym="RGD1560393"
                     /inference="alignment:Splign:2.1.0"
     exon            884..2973
                     /gene="Armc1"
                     /gene_synonym="RGD1560393"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caatgggttg ataaagccag cagaggtgac agggtcaccg cggagccttc agcagctccg
       61 ccgccagcga ctcagccctg tggttctttg agtcaggccg cgggtcaggg ttttcgccgc
      121 cggtcgtccg ccgtggtggg tgcggctctg atgctgcggc aggctccgga cgcccggagc
      181 tctggaggaa tttaagaagc ttttattcat gtgcatgtca tagaagatga attcatcctc
      241 ttctactgtg aatgaagagc ctgatgctct gtcagtagtt aaccagctac gggatttagc
      301 agcagatcca ttaaatagaa gagccatcgt ccaggaccag ggatgtttgc ctggcctcat
      361 tttgtttatg gaccatccaa acccctctgt cgtccactca gctttgcttg cgctccgata
      421 cttggctgaa tgtcgtgcga acagagaaaa gatgaaggga gaactgggga tgatgctgag
      481 cttgcagaac gtcatccaga agactacaac tccaggagaa acaaaacttc tggcctcaga
      541 aatctatgac attcttcaat cctccaatat ggctgatggt gatagtttta atgaaattaa
      601 ttcacgtaga aggaaagctc agttttttct ggggactaca aacaaacgtg ccaaaacagt
      661 agttttgcac atagacggtc tcgacgatac gtctcggcga aatctatgtg aagaggcttt
      721 gttaaaaatt aaaggtgtta ttagctttac ttttcaaatg gctgttcaaa gatgcgtggt
      781 gcggatccgt tcagatttga aagcagaggc tttggcgtca gcaatagcat cgaccaaggt
      841 gatgaaagcg cagcaagttg taaaaagtga aagtggggaa gagatgctgg tcccttttca
      901 ggatgcccct gtggaagtgg aagagaacac agagctccct gactatcttc ctgaggatga
      961 gagtcccaca aaggaacagg acaaggccgt gtcccgggtt ggatcacacc ctgaaggtgg
     1021 agccagctgg ttgagcacag ctgcaaactt tttatccaga tcattttact ggtgacgtca
     1081 gcttcagttt ggggctcaag gactgtgcaa gccaacaggg ggccagcttt ctgttgttgt
     1141 ggtgaactgt caagtgcaat ttgcaataaa ttatcatgga aagtttctag attactatgt
     1201 atgctgcatt ttacatctta ttgaacattt ttcacacaag acagaggcta caggtgaagt
     1261 ttgtttgtga aggtattttg gtattgtttt cctttgctca attgcctcat attttgtttt
     1321 gaaaaacatg ggtccactgt taaaaccaaa tgtatgtgta gctttatatt ctgttttaca
     1381 gaagcatgtg attagaaaaa cacattttct cctcaagcct caggagattt ctgaaaagtt
     1441 ttgcatagct ctcaagttgt gcatgaatta ccgaatatat ttttttttca gcttttcttc
     1501 atgaacaata taagacatgt gctttggtac ccttctctgg aagttgaaaa catacctact
     1561 tagccccctt ctgtgccttt tttattttgc caaccatgtt ttatagaaaa gacaatagta
     1621 acagcatttt gcaaatggaa ttatgttcat ttgaacatag aagtacctaa aaaggaaaaa
     1681 aaatctctac aaaaagctgt acagtcttac ttgctgtaat tttaatatta ctgtaggcca
     1741 gttaaaacgt ggacataagc actgtgaagt gcttttggga gaatttgaat gtggccaagc
     1801 atggctctgt tgacttcttc tcacttaggt tagagtggct tttaggaatt aagtccactg
     1861 atgatttgag cagcagatgg tctcttggcc ttactctgtg gtgacactgt atcctgctag
     1921 agaaaagtaa tagtttaaac cactgacaaa cttgaaaaag aaaactaaat tggatgccta
     1981 gaatgccgca gtgccacctc ggtcagcctg atgtcagaca taaactgcct ggcacatacc
     2041 catcccagag atgctgcttc ttattgcctt tcctggttat taagaaagta cctcagtcag
     2101 tttgtctaac acaggatcca cactattgct tagagagaaa gaaagccagc actgctcact
     2161 tattcttatt tttcatatct atccagaaaa ctgacttcag cgaaggtaag atatataaat
     2221 atagatatac acttgtggtt ttctttcttt aaaattacac atttgcgatg ctttcttaag
     2281 agtctaaaat atttgacaac taatatttct ttttagaagt cagctaaatc tatttaaagg
     2341 caacatcatt aaaactaaca ggaagaaact gaaatgcatc ttcagcaggt ggagctgctg
     2401 tttcgctgct tggagaatgt gaagtgaagt tggaccctgg aaggttccct tgcatctttg
     2461 tttctctttt agagatcatt gaagccatcc ggtgttactg gggaaaaata atcgtacata
     2521 ctatgggccg tgagaccatt atgttcatta acgttgtggc tttctggaag gagggtgtta
     2581 aaggatttag agcattttcc gcatgtctgg cctctgattc aagtgataag tacaagcaga
     2641 aagcagaaat tttcagggca cattgctaac ctatattatt atttgctgcc agaaccagat
     2701 gtgttgaaaa caaaacaaat cacctccttt ctatatccat taaagcaaag tttactctgt
     2761 gtttaacagg tttttatttt attttgcatt gtcacacatt tatttaaaaa ctatagccct
     2821 tttggtagtg atggtccagg tcagttgata atttcggact gatatttgtg tctatctagg
     2881 tgttcttcta ggactctcag agaaccgaag gcaactataa tggcagtttt tgaaatatat
     2941 tgtaaaataa taaaagataa cattgaaaat cga
//
