LOCUS       NM_001015031            2686 bp    mRNA    linear   ROD 12-NOV-2024
DEFINITION  Rattus norvegicus ARF like GTPase 5B (Arl5b), mRNA.
ACCESSION   NM_001015031 XM_006254312 XM_344635
VERSION     NM_001015031.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2686)
  AUTHORS   Rosa-Ferreira,C., Christis,C., Torres,I.L. and Munro,S.
  TITLE     The small G protein Arl5 contributes to endosome-to-Golgi traffic
            by aiding the recruitment of the GARP complex to the Golgi
  JOURNAL   Biol Open 4 (4), 474-481 (2015)
   PUBMED   25795912
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On or before Apr 8, 2021 this sequence version replaced
            XM_006254312.4, NM_001015031.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582419.377854.1,
                                           SRR26643298.69990.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-189               JAXUCZ010000017.1  82864428-82864616
            190-250             JAXUCZ010000017.1  82877461-82877521
            251-398             JAXUCZ010000017.1  82878996-82879143
            399-482             JAXUCZ010000017.1  82882303-82882386
            483-634             JAXUCZ010000017.1  82885166-82885317
            635-2686            JAXUCZ010000017.1  82886407-82888458
FEATURES             Location/Qualifiers
     source          1..2686
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17q12.3"
     gene            1..2686
                     /gene="Arl5b"
                     /gene_synonym="Arl8"
                     /note="ARF like GTPase 5B"
                     /db_xref="GeneID:364788"
                     /db_xref="RGD:1305569"
     exon            1..189
                     /gene="Arl5b"
                     /gene_synonym="Arl8"
                     /inference="alignment:Splign:2.1.0"
     CDS             141..683
                     /gene="Arl5b"
                     /gene_synonym="Arl8"
                     /note="ADP-ribosylation factor-like 8; ADP-ribosylation
                     factor-like 5B; ADP-ribosylation factor like GTPase 5B"
                     /codon_start=1
                     /product="ADP-ribosylation factor-like protein 5B"
                     /protein_id="NP_001015031.2"
                     /db_xref="GeneID:364788"
                     /db_xref="RGD:1305569"
                     /translation="MMGLIFAKLWSLFCNQEHKVIIVGLDNAGKTTILYQFLMNEVVH
                     TSPTIGSNVEEIVVKNTHFLMWDIGGQESLRSSWNTYYSNTEFIILVVDSIDRERLAI
                     TKEELYRMLAHEDLRKAAVLIFANKQDLKGCMTAAEISKYLTLSSIRDHPWHIQSCCA
                     LTGEGLCQGLEWMTSRIGVR"
     exon            190..250
                     /gene="Arl5b"
                     /gene_synonym="Arl8"
                     /inference="alignment:Splign:2.1.0"
     exon            251..398
                     /gene="Arl5b"
                     /gene_synonym="Arl8"
                     /inference="alignment:Splign:2.1.0"
     exon            399..482
                     /gene="Arl5b"
                     /gene_synonym="Arl8"
                     /inference="alignment:Splign:2.1.0"
     exon            483..634
                     /gene="Arl5b"
                     /gene_synonym="Arl8"
                     /inference="alignment:Splign:2.1.0"
     exon            635..2686
                     /gene="Arl5b"
                     /gene_synonym="Arl8"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cccggttccg ccgaggacca aagcttcgct ggactcttga ggctccgcgg ctccgggtcg
       61 gcttcccctc ggttccaccg cgggcgccgc ggcacctgcc gccgagtgct gccccaggaa
      121 gcctgtcccg tccggggctc atgatggggc tgatcttcgc taaactgtgg agccttttct
      181 gtaaccaaga gcacaaagta atcattgtgg gactggacaa cgcggggaaa accaccattc
      241 tttatcaatt cttaatgaat gaagtagttc atacttctcc aaccatagga agcaatgttg
      301 aagaaatagt tgtgaagaac actcattttc ttatgtggga catcggtggt caggagtctc
      361 tgaggtcatc ctggaacacc tattactcaa acacagagtt catcattctt gttgtcgata
      421 gcattgacag agaacgcttg gctattacaa aagaagaatt atacagaatg ctggctcacg
      481 aggatttacg gaaagccgca gtcctcatat tcgcaaataa gcaggatctg aaagggtgca
      541 tgacggcggc cgagatctcc aagtacctca ccctcagttc cattagggac cacccgtggc
      601 acatccagtc gtgctgtgcg ctcacaggag aagggttatg ccaaggtcta gagtggatga
      661 cctccaggat cggtgtgaga taatcttttt ggtgaaaaag acttctctat ttattcggtg
      721 acatgaacat ttttcctaat acctttggct gctaaggcag cagcatgttt aatttatgac
      781 aacacaaacc tccaagtgac gcttgaatca agtgccactg tactggaaca taaagatggt
      841 ttcttacctt tgtttcaaat gtactaatct cagtcggacg agcataacgt gtgactatgt
      901 tgtagcagct ggactctaat gactctgtgt attctgatta ctcagtgact gccttgtaaa
      961 aaccatttgt cgtctatttc ctgttatctg gttttgttat gtcctttata accggtttct
     1021 cacatatggc cgccacttcc ttctgaggta cttactggct tgacagaaca gtagtgagga
     1081 tcgtctttta tttatccagc atgaagcatt cttttctcta caaacctttt ttatcttttg
     1141 gacagagtta attacaatga gaaaagtcta cctagaaact ctgtgtgtgt gtgtgtgtgt
     1201 gtgtgtgtgt ggtgtaagca tcacgaatac ttgtctttac atcttcctca cctcactgca
     1261 tgtgatagta taattttaag ttgccctttg catgagaatc atttagtcca tttattcata
     1321 gaaggagtta agctcacttt tctgccaacc atatttggtt taaaaactaa tcaaggtgaa
     1381 gcacgaatta aaaaacccca gcttcaatga caaatgctat tggctccatc tagtagctaa
     1441 agatttttca gtgtgtgtgt aactgtcaga atttagtaaa acatgccaac gtaaattaga
     1501 gccaggacac tcgggatatg ttttccatca ggttactgcc tgctttatta tcagcatagc
     1561 ctcagctgtt ttgtcagaga tgcctcacct gctctggcag cagcctaagc acggcacgtc
     1621 ttattcctta ggtgtgcagt agtagctgtc agagcgtctt tatcaccagc agtatattac
     1681 cgaaaggcag cacagcatgg tctgtctgta acctggctga gcatgaggtg aaagaggctt
     1741 cagattcgtt ttgccacacc tcctgtctct tgtgcaggtc gactcgtgtc ctaaactctt
     1801 acagggtgct gctgagtcta ttcctagctc tgagaatgtt cctgtgagac tcagcgatcg
     1861 tattctctgt ttgtttgttt gtttgactgg gtgtttgttt gttttgtttt gatagggttt
     1921 ctctctgtag tccttgtcct ggaactcact aggtagacca gactgtcata ttcttagcaa
     1981 catagatgct tttattggtt acagaaatga aaggagaaag ggcctaatgc tgacgtcaga
     2041 cttgctgggt ggtgttaacg gttcccaggg cagttgtcta agatgaaagt aagaacgagc
     2101 tcttaagttg aagggggacg aatgttgtca ttagccttgt ctatgccatc ccagtcattt
     2161 gctgtatgaa aggcataaaa tatgtactaa ggggaagttc ttcatttttt tagtattttt
     2221 catttggatc aaaataagct tcagtgttca taaatgcctg ctcaaaattg atattttcat
     2281 ttcaggtttt ttgtatgtaa gttgccttaa attttactct cttttggggt gtactcattt
     2341 gttatgttca gttaatttag ttgaacttga taatatttct tttagtgttt gtacccttca
     2401 tctggaaaag tagttagagg aaagcttttc tgggattttg gaaactgttt aaactttgaa
     2461 tctttttctt agtgattcta tgccaagtag agtataaatt taatttttct tgtgtgtttt
     2521 aaatataact cataatcaaa gatgagagag aaaagcagat ataaatcagt gtggatggtg
     2581 tgtggcggtt gtgggaacta agaaaatacc agttacttaa agcacacttt gcctgaattt
     2641 tactttgtta tgtttaccat aaatattaaa aaaataattc tcataa
//
