LOCUS       NM_001107624            4037 bp    mRNA    linear   ROD 23-MAR-2023
DEFINITION  Rattus norvegicus AT-rich interaction domain 5B (Arid5b), mRNA.
ACCESSION   NM_001107624 XM_001074258 XM_228114
VERSION     NM_001107624.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4037)
  AUTHORS   Zhang X, Nham GTH, Ito K and Shinomura T.
  TITLE     Gene expression of type II collagen is regulated by direct
            interaction with Kruppel-like factor 4 and AT-rich interactive
            domain 5B
  JOURNAL   Gene 773, 145381 (2021)
   PUBMED   33383116
  REMARK    GeneRIF: Gene expression of type II collagen is regulated by direct
            interaction with Kruppel-like factor 4 and AT-rich interactive
            domain 5B.
REFERENCE   2  (bases 1 to 4037)
  AUTHORS   Baba A, Ohtake F, Okuno Y, Yokota K, Okada M, Imai Y, Ni M, Meyer
            CA, Igarashi K, Kanno J, Brown M and Kato S.
  TITLE     PKA-dependent regulation of the histone lysine demethylase complex
            PHF2-ARID5B
  JOURNAL   Nat Cell Biol 13 (6), 668-675 (2011)
   PUBMED   21532585
REFERENCE   3  (bases 1 to 4037)
  AUTHORS   Tarantino C, Paolella G, Cozzuto L, Minopoli G, Pastore L, Parisi S
            and Russo T.
  TITLE     miRNA 34a, 100, and 137 modulate differentiation of mouse embryonic
            stem cells
  JOURNAL   FASEB J 24 (9), 3255-3263 (2010)
   PUBMED   20439489
REFERENCE   4  (bases 1 to 4037)
  AUTHORS   Dong J, Ishimori N, Paigen B, Tsutsui H and Fujii S.
  TITLE     Role of modulator recognition factor 2 in adipogenesis and leptin
            expression in 3T3-L1 cells
  JOURNAL   Biochem Biophys Res Commun 366 (2), 551-555 (2008)
   PUBMED   18070594
REFERENCE   5  (bases 1 to 4037)
  AUTHORS   Yamakawa T, Whitson RH, Li SL and Itakura K.
  TITLE     Modulator recognition factor-2 is required for adipogenesis in
            mouse embryo fibroblasts and 3T3-L1 cells
  JOURNAL   Mol Endocrinol 22 (2), 441-453 (2008)
   PUBMED   17962384
REFERENCE   6  (bases 1 to 4037)
  AUTHORS   Schmahl J, Raymond CS and Soriano P.
  TITLE     PDGF signaling specificity is mediated through multiple immediate
            early genes
  JOURNAL   Nat Genet 39 (1), 52-60 (2007)
   PUBMED   17143286
REFERENCE   7  (bases 1 to 4037)
  AUTHORS   Whitson RH, Tsark W, Huang TH and Itakura K.
  TITLE     Neonatal mortality and leanness in mice lacking the ARID
            transcription factor Mrf-2
  JOURNAL   Biochem Biophys Res Commun 312 (4), 997-1004 (2003)
   PUBMED   14651970
REFERENCE   8  (bases 1 to 4037)
  AUTHORS   Lahoud MH, Ristevski S, Venter DJ, Jermiin LS, Bertoncello I,
            Zavarsek S, Hasthorpe S, Drago J, de Kretser D, Hertzog PJ and Kola
            I.
  TITLE     Gene targeting of Desrt, a novel ARID class DNA-binding protein,
            causes growth retardation and abnormal development of reproductive
            organs
  JOURNAL   Genome Res 11 (8), 1327-1334 (2001)
   PUBMED   11483573
REFERENCE   9  (bases 1 to 4037)
  AUTHORS   Whitson RH, Huang T and Itakura K.
  TITLE     The novel Mrf-2 DNA-binding domain recognizes a five-base core
            sequence through major and minor-groove contacts
  JOURNAL   Biochem Biophys Res Commun 258 (2), 326-331 (1999)
   PUBMED   10329386
REFERENCE   10 (bases 1 to 4037)
  AUTHORS   Huang TH, Oka T, Asai T, Okada T, Merrills BW, Gertson PN, Whitson
            RH and Itakura K.
  TITLE     Repression by a differentiation-specific factor of the human
            cytomegalovirus enhancer
  JOURNAL   Nucleic Acids Res 24 (9), 1695-1701 (1996)
   PUBMED   8649988
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473988.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_228114.4, XM_001074258.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760386,
                              SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..4037
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /map="20p11"
     gene            1..4037
                     /gene="Arid5b"
                     /note="AT-rich interaction domain 5B"
                     /db_xref="GeneID:309728"
                     /db_xref="RGD:1311735"
     exon            1..28
                     /gene="Arid5b"
                     /inference="alignment:Splign:2.1.0"
     CDS             8..3562
                     /gene="Arid5b"
                     /note="AT rich interactive domain 5B (Mrf1 like)"
                     /codon_start=1
                     /product="AT-rich interactive domain-containing protein
                     5B"
                     /protein_id="NP_001101094.1"
                     /db_xref="GeneID:309728"
                     /db_xref="RGD:1311735"
                     /translation="MEPNSLQWVGSPCGLHGPYIFYKAFQFHLEGKPKILSLGDFFFV
                     RCTPKDPICIAELQLLWEERTSRQLLSSSKLYFLPEDTPQGRNSDHGEDEVIAVSEKV
                     IVKLEDLVKWAHSDFSKWRCGLRATPVKTEGFGRNGQKEALLRYRQSTLNSGLNFKDV
                     LKEKADLGEDEEENNVIVLSYPQYCRYRSMLKRIQDKPSSILTDQFALALGGIAVVSR
                     NPQILYCRDTFDHPTLIENESVCDEFAPNLKGRPRKKKTCPQRRDSFSGSKDPNNNCD
                     GKVISKVKGEARSALTKPKNNHNNCKKSSSEEKPKLSIGEECRADEQAFLVALYKYMK
                     ERKTPIERIPYLGFKQINLWTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAA
                     TCTRRHYERLILPYERFIKGEEDKPLPPIKPRKQENNAQENENKTKVSGNKRIKQEMA
                     KNKKEKENTPKPQDPSEVSSEQRKEEETLSQKSVPEPLPAPEVKKKPEGHKDLVVRAP
                     VSRADPEKGNETDQGSNCEKEAEEVGDKGLAPLLPSPPLPPEKGSAPTPGAGKQPLAS
                     PSAQMDSKQEAKPCCFPESPENDLQGAPFSSLPTTEQPLAVQPEAEEEKLPAMANYIA
                     NCTVKVDQLGSDDIHTALKQTPKVLVVQSFDMFKDKDLTGPMNENHGLNYTPLLYSRG
                     NPGIMSPLAKKKLLSQVSGASLSSSYPYGSPPPLISKKKLIARDDQSQAHHSQSSDHM
                     AISRPSVIQHVQSFKNKASEDRKSINDIFKHDKLSRSDAHRCGFSKHQLGSLADSYIL
                     KQEAQESKDKLLEKRAVSHAHVPSLLADFYSSPHLHSLYRHTEHHLHNEQSAKYAARD
                     VYQESENGAFLSHKHPEKIHVNYLASLHLQDKKLAAAEASTDEQPTDLSLPKNPHKLT
                     SKVLGLAHSASGSQEIKGTSQFQVISSQSRDCHPKACRVSPMTMSAPKKYPESLARSG
                     KPHHVRLENFRKMEGMVHPILHRKMSPQNIGAARPIKRSLEDLDLVIAGKKARAVSPL
                     DPAKEASGKEKASEQESEGNKAAYSGHSGAASEGHKVPLSSPIFPGLYSGSLCNSGLN
                     SRLPAGYSHSLQYLKNQTVLSPLMQPLAFHSLVMQRGIFTSPTNSQQLYRHLAAATPV
                     GSSYGDLLHNSIYPLAAINPQAAFPSSQLSSVHPSTKL"
     exon            29..283
                     /gene="Arid5b"
                     /inference="alignment:Splign:2.1.0"
     exon            284..509
                     /gene="Arid5b"
                     /inference="alignment:Splign:2.1.0"
     exon            510..740
                     /gene="Arid5b"
                     /inference="alignment:Splign:2.1.0"
     exon            741..853
                     /gene="Arid5b"
                     /inference="alignment:Splign:2.1.0"
     exon            854..1058
                     /gene="Arid5b"
                     /inference="alignment:Splign:2.1.0"
     exon            1059..1111
                     /gene="Arid5b"
                     /inference="alignment:Splign:2.1.0"
     exon            1112..1209
                     /gene="Arid5b"
                     /inference="alignment:Splign:2.1.0"
     exon            1210..1408
                     /gene="Arid5b"
                     /inference="alignment:Splign:2.1.0"
     exon            1409..4037
                     /gene="Arid5b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgtcgagatg gagcccaact cactccagtg ggtcggctca ccgtgtggct tacacggacc
       61 ttatattttc tataaggctt ttcaattcca ccttgaagga aaaccaaaaa tcttgtccct
      121 tggcgacttt ttctttgtaa gatgtacgcc aaaggatccg atttgcatag cggagctcca
      181 gctgttgtgg gaagaaagga ccagccggca acttttatcc agctcgaaac tttatttcct
      241 tcccgaagac actccccaag gccgaaatag cgaccatggc gaggacgagg tcatcgccgt
      301 ctctgaaaag gtgattgtaa agctcgagga cctcgtcaaa tgggcgcatt ctgatttctc
      361 caagtggagg tgtgggctcc gagccactcc ggtgaagacc gagggctttg ggagaaatgg
      421 ccagaaggag gctctgctca ggtacaggca gtcaaccctt aacagtgggc tcaacttcaa
      481 agacgttctc aaggaaaagg ctgatctcgg ggaagatgag gaagaaaaca acgtgattgt
      541 gctcagttac cctcagtact gtcggtaccg gtccatgctt aaacgcatcc aggataagcc
      601 atcgtccatc ctcacggacc agttcgcgtt agccctgggg ggcatcgcgg tggtcagcag
      661 aaacccccag atcctgtact gccgggacac ctttgatcac cccactctca tcgagaacga
      721 gagcgtgtgt gatgagtttg cgccaaatct caaaggcaga ccacgcaaaa agaaaacatg
      781 tccccagaga agagactcct tcagtggctc aaaggacccc aacaataact gtgacggtaa
      841 agtcatcagc aaggtgaaag gggaggccag gtcagccttg accaagccga aaaataacca
      901 caataactgt aaaaaatcct cgagtgaaga aaagccaaag ttgtccattg gcgaagagtg
      961 cagggcagat gaacaagcct tcttagtggc cctgtacaaa tacatgaaag aaagaaaaac
     1021 gcccatcgag cgaattccct acttgggttt caaacagatt aacctttgga ctatgtttca
     1081 agctgctcaa aaactgggag gatatgaaac aataacagcc cgccgtcagt ggaaacacat
     1141 ttacgacgag ttaggcggta atcctgggag caccagtgcg gccacttgta cccgcagaca
     1201 ctacgaaagg ttaatcctgc cgtatgaaag atttattaag ggggaagaag ataagcctct
     1261 gcctccaatc aaacctcgga aacaggaaaa taatgcacag gaaaatgaga ataaaacaaa
     1321 agtctcggga aacaaacgca tcaaacagga aatggccaaa aacaagaaag aaaaagagaa
     1381 tacccccaaa ccccaagatc cgtctgaggt ctcatcagag caaagaaagg aagaagaaac
     1441 gttaagccag aaaagtgtcc cagagcctct cccagctcca gaagtaaaga agaaaccaga
     1501 agggcacaag gatcttgtag tgagggcccc agtgtccaga gcagacccag aaaagggcaa
     1561 tgaaactgac caaggttcca actgcgagaa agaagctgag gaggtgggag ataagggcct
     1621 tgcccctctg ctcccaagcc ctcccttgcc ccccgaaaaa ggttcggctc ctacccctgg
     1681 ggctggcaaa cagccccttg cctctcccag tgcccaaatg gactcaaagc aagaagccaa
     1741 accctgctgc tttccagaga gccctgagaa tgacctccag ggagcaccgt tctccagcct
     1801 ccccaccacc gagcaaccac tggccgtcca gcctgaagcc gaggaagaga agcttcctgc
     1861 catggctaat tacatcgcca actgcactgt gaaagtggac cagctgggca gcgacgacat
     1921 ccacactgcc ctcaagcaga ccccgaaggt cctcgtggtc caatcatttg acatgttcaa
     1981 agacaaagac ttgaccggcc ccatgaatga gaaccacgga cttaactaca cacccctgct
     2041 ttactcccgg ggcaaccctg gtatcatgtc cccactggcc aagaaaaagc ttttgtctca
     2101 ggtgagtggg gccagcctct ccagcagcta tccctatggc tccccacccc ccttgatcag
     2161 caaaaagaaa cttatcgcca gggacgacca gtcccaggcc caccacagcc aaagctctga
     2221 tcacatggcc atcagccggc catccgtaat ccaacatgtc cagagcttca aaaacaaggc
     2281 ctctgaagac aggaagagca tcaacgacat cttcaagcat gacaaactga gccggtctga
     2341 cgcccaccgc tgtggcttct ccaagcacca actcggctcc ctggcggact cctacatcct
     2401 gaaacaagag gcacaggaga gcaaggataa actgttggag aaaagagcag tctcccacgc
     2461 ccacgtgccc agtttgctgg ccgatttcta ctcctccccg catctgcaca gcctctaccg
     2521 gcacacggaa caccatcttc ataacgaaca gtccgctaag tatgccgcta gggacgtgta
     2581 ccaggaatcg gaaaacggcg cctttctttc tcacaagcac ccagagaaga tacacgtcaa
     2641 ttatctcgca tctctccatc tgcaagataa gaagctggct gcggcagaag cctctaccga
     2701 tgagcaacca acagatctga gccttcccaa gaacccacat aaactgacca gcaaagtcct
     2761 gggcctggcc cactcagcct caggatccca ggagatcaaa ggcacctccc agttccaggt
     2821 catcagcagc cagagccgag actgtcatcc caaagcctgc cgggtatcac ccatgaccat
     2881 gtcggcccct aaaaaatacc ccgagtcact tgcgaggtca ggaaagcctc accacgtgag
     2941 actggagaac ttccggaaaa tggaaggcat ggtccatccc atcctgcacc ggaagatgag
     3001 cccacagaac attggagctg ctcgccccat aaagcgcagt ctggaggatt tagatcttgt
     3061 gatcgccggg aaaaaagcca gggctgtgtc tcccttggac ccagccaagg aggcttctgg
     3121 gaaagaaaag gcctccgaac aggagagcga gggcaacaaa gcagcctaca gtgggcattc
     3181 tggggctgca tcggaaggtc acaaggtccc cctctcctcc cctatcttcc caggtttgta
     3241 ttctggtagc ctgtgtaact caggcctcaa ctccaggctc ccggccgggt actcccattc
     3301 tctgcagtac ttgaagaacc agacggtgct ttctcctctc atgcagcccc tggctttcca
     3361 ctcgcttgtg atgcaaagag gaatttttac atcgccaaca aattctcagc agctgtacag
     3421 acacttggcc gcagccaccc cggtaggaag ttcctacggg gacctgttac acaatagcat
     3481 ctacccttta gctgctatca accctcaggc cgccttcccg tcttctcagc tgtcatccgt
     3541 acaccccagc acaaaactgt aagcctcgcc gcgcccagca tccccaaacg gtgtggtcca
     3601 tgcaccgagc ctgcctggag ggctggttgc aaagttggaa gtcagtatcc cttctaaaaa
     3661 ggtttcgtcc cagccataga ggtgaacgta cctacctttt cggggacaac cctaggctgg
     3721 ctggccagtt gtgacctccc ttccaacaca gatggcctcg ggcctccagg tccttgtctt
     3781 ttcacattgg tcttatgaag ggatctgtgg tctatcctag aagaacgcag aggaccccat
     3841 cagatttggg tggtaaggaa gcgactggag agtaaagttg gggaggcagg cttttcaaag
     3901 gcaaggtcaa gaaagactgg caagtaataa ccaggggacg cccgtctttt ttcatcaaac
     3961 tcgccaagtt caatcaatgc aatgtacagt aaaacttaaa gagacctttc attctgacac
     4021 tattaaacaa tccagag
//
