LOCUS       NM_001414215            5893 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus AT-rich interaction domain 4B (Arid4b),
            transcript variant 1, mRNA.
ACCESSION   NM_001414215 XM_006254016
VERSION     NM_001414215.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5893)
  AUTHORS   Wu,R.C., Jiang,M., Beaudet,A.L. and Wu,M.Y.
  TITLE     ARID4A and ARID4B regulate male fertility, a functional link to the
            AR and RB pathways
  JOURNAL   Proc Natl Acad Sci U S A 110 (12), 4616-4621 (2013)
   PUBMED   23487765
REFERENCE   2  (bases 1 to 5893)
  AUTHORS   Wu,M.Y., Tsai,T.F. and Beaudet,A.L.
  TITLE     Deficiency of Rbbp1/Arid4a and Rbbp1l1/Arid4b alters epigenetic
            modifications and suppresses an imprinting defect in the PWS/AS
            domain
  JOURNAL   Genes Dev 20 (20), 2859-2870 (2006)
   PUBMED   17043311
REFERENCE   3  (bases 1 to 5893)
  AUTHORS   Cui,D., Jin,G., Gao,T., Sun,T., Tian,F., Estrada,G.G., Gao,H. and
            Sarai,A.
  TITLE     Characterization of BRCAA1 and its novel antigen epitope
            identification
  JOURNAL   Cancer Epidemiol Biomarkers Prev 13 (7), 1136-1145 (2004)
   PUBMED   15247124
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Nov 16, 2022 this sequence version replaced XM_006254016.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1220118.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            gene product(s) localized to mito. :: inferred from homology
            RefSeq Select criteria             :: based on conservation,
                                                  expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-229               JAXUCZ010000017.1  55958154-55958382   c
            230-284             JAXUCZ010000017.1  55957317-55957371   c
            285-395             JAXUCZ010000017.1  55917469-55917579   c
            396-461             JAXUCZ010000017.1  55907316-55907381   c
            462-552             JAXUCZ010000017.1  55904618-55904708   c
            553-632             JAXUCZ010000017.1  55902068-55902147   c
            633-724             JAXUCZ010000017.1  55898405-55898496   c
            725-863             JAXUCZ010000017.1  55892928-55893066   c
            864-943             JAXUCZ010000017.1  55890669-55890748   c
            944-1020            JAXUCZ010000017.1  55889249-55889325   c
            1021-1175           JAXUCZ010000017.1  55887621-55887775   c
            1176-1248           JAXUCZ010000017.1  55884914-55884986   c
            1249-1343           JAXUCZ010000017.1  55882401-55882495   c
            1344-1441           JAXUCZ010000017.1  55881271-55881368   c
            1442-1682           JAXUCZ010000017.1  55878525-55878765   c
            1683-1858           JAXUCZ010000017.1  55877843-55878018   c
            1859-2119           JAXUCZ010000017.1  55870176-55870436   c
            2120-2204           JAXUCZ010000017.1  55859740-55859824   c
            2205-2403           JAXUCZ010000017.1  55856929-55857127   c
            2404-3618           JAXUCZ010000017.1  55846270-55847484   c
            3619-3732           JAXUCZ010000017.1  55843152-55843265   c
            3733-3948           JAXUCZ010000017.1  55840772-55840987   c
            3949-4095           JAXUCZ010000017.1  55839122-55839268   c
            4096-5893           JAXUCZ010000017.1  55833908-55835705   c
FEATURES             Location/Qualifiers
     source          1..5893
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17q12.1"
     gene            1..5893
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /note="AT-rich interaction domain 4B"
                     /db_xref="GeneID:84481"
                     /db_xref="RGD:619919"
     exon            1..229
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            230..284
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     CDS             279..4223
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /note="isoform 1 is encoded by transcript variant 1;
                     AT-rich interactive domain-containing protein 4B;
                     sin3-associated polypeptide p180; ARID domain-containing
                     protein 4B; 180 kDa Sin3-associated polypeptide;
                     retinoblastoma-binding protein 1-like 1; histone
                     deacetylase complex subunit SAP180; retinoblastoma-binding
                     protein 1-related protein; AT rich interactive domain 4B
                     (Rbp1 like); AT-rich interactive domain-containing protein
                     4B-like"
                     /codon_start=1
                     /product="AT-rich interactive domain-containing protein 4B
                     isoform 1"
                     /protein_id="NP_001401144.1"
                     /db_xref="GeneID:84481"
                     /db_xref="RGD:619919"
                     /translation="MKALDEPPYLTVGTDVSAKYRGAFCEAKIKTAKRLVKVKVTFRH
                     DSSTVEVQDDHIKGPLKVGAIVEVKNLDGAYQEAVINKLTDASWYTVVFDDGDEKTLR
                     RSSLCLKGERHFAESETLDQLPLTNPEHFGTPVIGKKTNRGRRSNHIPEEESSSSSSD
                     DDEDDRKQTDELLGKVVCVDYISLDKKKALWFPALVVCPDCSDEIAVKKDNILVRSFK
                     DGKFTSVPRKDVHEITSDTAPKPDAVLKQAFDQALEFHKSRTIPANWKTELKEDSSSS
                     EAEEEEEEEDDEKEKEDNSSEEEEEIEPFPEERENFLQQLYKFMEDRGTPINKRPVLG
                     YRNLNLFKLFRLVHKLGGFDNIESGAVWKQVYQDLGIPVLNSAAGYNVKCAYKKYLYG
                     FEEYCRSANIDFQMALPEKVLNKPCKDCENKEIKVKEESDAEIKEVNVEDSKNMIPKE
                     ETPAEDESERKENIKPSLGSKKGLLECIPAQSDQEKEANITKLEEKESLEDKDGATAR
                     AEEALSTEVDAEEEQARSGDETNKEEDEDDEEIEEEEEEDEEEDEDEDDDDNNEEEEF
                     ECYPPGMKVQVRYGRGKNQKMYEASIKDSDVEGGEVLYLVHYCGWNVRYDEWIKADKI
                     VRPADKNVPKIKHRKKIKNKLDKEKDRDEKYSPKNCKLRRLSKSPFQSNPSPEMVSKL
                     DLADAKNSDTGHIKSIEITSILNGLQASESSAEDSEQEEERCAQDPESSSKDESKVEH
                     SAHSRSELISKEELSSPSLLEENKVHPDLVIAKTVSKSPERLRKDVEAISEDTDFEEE
                     DEITKKRKDVKKDTTDKALKPQTKRGKRRYCNTDECLQSGSPGKKEDRTKSKEPLCTG
                     NSSNSSSDEDEEEKSKAKMTPTKKYNGLEEKRKSLRTTSFYSGFSEVAEKRIKLLNNS
                     DERLQNNRAKDRKDVWSSIQGQWPKKTLKELFSDSDTEAAASPPHAAPDEGTVEESLQ
                     TVAEEESCSPNMELEKPLPTSVDSKPVEEKPLEVSDRKTEFPSSGSNSVLNTPPTTPE
                     SPSSVTVTETSQQQSSVTVSVPLPPNQEEVRSIKSETDSTIEVDSVVGELQDLQSEGN
                     SSPAGFNASVSSSSSNQPEPEHPEKACTGQKRVKDTQGVGSSSKKQKRSHKATVVNNK
                     KKGKGTNSSDSEDLSAGESVTKTQAIKSVPTGMKTHNSKSPARIQSPGKCGKNGDKDP
                     DLKEPSNRLPKVYKWSFQMSDLENMTSAERISILQEKLQEIRKHYLSLKSEVASIDRR
                     RKRLKKKERESAATSSSSSSPSSSSITAAVMLTLAEPSMSSASQNGMSVECR"
     exon            285..395
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            396..461
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            462..552
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            553..632
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            633..724
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            725..863
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            864..943
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            944..1020
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            1021..1175
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            1176..1248
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            1249..1343
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            1344..1441
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            1442..1682
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            1683..1858
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            1859..2119
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            2120..2204
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            2205..2403
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            2404..3618
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            3619..3732
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            3733..3948
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            3949..4095
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
     exon            4096..5893
                     /gene="Arid4b"
                     /gene_synonym="Bcaa"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtcgagtcc ggagtgagga gctcgggcgc tggagcggag ggagagtctc cagccgcagc
       61 ttggtgccgc gacggccact gcctggactt cttcccggag ggggccggag aaggtcggct
      121 gccgtgttcc tccggaggac agtgagaccg gggcccggac ctccgtccga gagggatttt
      181 ttgtcgcccc ctccccccgc gagggagccg gagcggccgc caaacaaagg tgcaggtgaa
      241 gcgggtgtcg ccgtggggat cgcggcccca gagtcaccat gaaggccctt gatgagcctc
      301 cttatttgac agtgggcact gatgtgagtg ccaagtacag aggagccttt tgtgaagcca
      361 agatcaagac tgcaaaaaga cttgtcaaag tcaaggtgac ttttagacac gattcttcaa
      421 cagtggaagt tcaggatgac cacataaagg gcccactgaa ggtaggagct attgtggaag
      481 tgaagaatct tgatggtgcc tatcaggaag ctgttatcaa taaactgaca gatgcaagtt
      541 ggtatactgt ggtttttgat gatggagatg agaagacact gagaagatct tcattatgtc
      601 tgaaaggaga gagacatttt gctgaaagtg aaacactaga ccagctccca cttaccaatc
      661 ctgagcattt tggcactcca gtcataggaa agaaaacaaa tagaggaaga agatctaatc
      721 atataccaga ggaggaatct tcttcctcat ccagtgatga cgatgaggat gataggaaac
      781 agactgacga actgctaggc aaagttgttt gtgtagatta tattagtttg gataaaaaga
      841 aagcgctgtg gttccctgca ctggtggttt gtcctgactg tagtgatgag atcgccgtga
      901 aaaaagacaa tattcttgtg cgatctttca aagatggcaa atttacttca gttccaagga
      961 aagatgtcca tgaaattact agtgacactg caccaaagcc tgatgccgta ttaaaacaag
     1021 cctttgatca ggcacttgag tttcacaaaa gtagaactat tcctgctaac tggaagactg
     1081 aactgaaaga agacagctcc agtagtgaag ccgaggaaga ggaggaggag gaagatgatg
     1141 aaaaagagaa agaagataat agcagcgaag aagaggaaga aatagaacca tttccagagg
     1201 aaagggagaa ctttcttcag cagctgtata aattcatgga ggatagaggt acacctatta
     1261 acaaacggcc tgtgcttggg tatcgaaatc tgaatctttt taagttattc agacttgtgc
     1321 acaaacttgg aggatttgat aacattgaaa gtggagctgt ttggaagcaa gtctaccaag
     1381 accttggcat ccctgtctta aattcagctg caggatataa cgttaaatgt gcttacaaaa
     1441 agtacttata tggctttgaa gagtactgca ggtcggcaaa tattgatttt cagatggcat
     1501 tgccagagaa agttcttaac aagccatgta aagattgtga aaataaagaa ataaaagtta
     1561 aagaagaaag tgatgcagag atcaaagaag taaatgtgga agacagtaag aacatgatac
     1621 caaaagagga gacgcctgct gaggatgaga gtgaaagaaa agaaaatatc aaaccctctc
     1681 tgggaagtaa aaaaggctta ttagaatgta tacctgcaca atctgatcaa gaaaaagaag
     1741 ctaacattac aaaactagaa gaaaaggaaa gcttggaaga taaagacggt gccacagcta
     1801 gggccgagga ggccctcagc acagaggtag atgctgaaga agagcaagca cgatctggag
     1861 atgaaaccaa taaagaagaa gatgaagatg atgaagaaat agaagaggag gaggaagaag
     1921 atgaggaaga agatgaggat gaagatgatg atgacaacaa tgaagaagag gagtttgagt
     1981 gctatccacc aggcatgaaa gtccaagtgc ggtatggacg agggaaaaat caaaaaatgt
     2041 atgaagctag tataaaagat tctgatgtcg aaggtggaga ggtcctttac ttggtgcatt
     2101 actgcggatg gaatgtgaga tatgatgaat ggattaaagc agataaaata gtaagacctg
     2161 ctgataaaaa tgtaccaaag ataaaacatc ggaagaaaat aaagaataaa ctagacaaag
     2221 aaaaagacag agatgaaaaa tactctccta agaactgtaa acttcgacgc ttgtcaaaat
     2281 caccgtttca gtcaaatcca tctcctgaga tggtttccaa actagatctt gctgatgcca
     2341 aaaattctga tacaggtcat attaaatcta tagaaattac ctccattctt aatggactac
     2401 aagcttccga aagctcagct gaagacagtg agcaggagga ggagaggtgt gctcaggacc
     2461 cagaaagcag tagcaaagac gaatcaaagg tggaacattc agcccacagc agaagtgagc
     2521 tgatttcaaa agaggaactg agtagtccat ctttgctaga agaaaacaaa gtccacccag
     2581 atttggtaat agccaaaaca gtgtcaaaat ctccagaaag attaagaaaa gatgtggaag
     2641 caatatcaga agatactgat tttgaagagg aagatgaaat cacaaaaaag agaaaggatg
     2701 ttaaaaagga cacaacagat aaggctttaa agccacaaac aaaacgtggg aaaagacggt
     2761 attgtaatac agacgaatgt ttgcagagtg gatcccctgg caagaaggaa gacagaacca
     2821 agagcaaaga gccactctgc acaggaaaca gtagtaatag ctcctcagat gaagacgaag
     2881 aggaaaagtc caaagcaaag atgacaccaa ccaagaaata taatggctta gaagaaaaga
     2941 gaaaatcttt gcggacaact agtttctatt caggattttc agaagtagca gaaaaaagga
     3001 taaaactttt aaataactct gatgaaagac tccagaacaa cagggctaaa gatagaaaag
     3061 acgtctggtc aagtattcag ggacagtggc ctaagaaaac actaaaggag cttttctcgg
     3121 actctgacac tgaggctgca gcttctccac cccatgctgc cccagatgaa gggacagtag
     3181 aggagtcact gcagactgtg gcagaagagg agagttgctc acccaatatg gagctagaga
     3241 agccactacc taccagtgtt gacagtaagc cagtggaaga aaagccccta gaagttagtg
     3301 acagaaaaac agaatttccg agcagtggca gtaattcagt gctcaatacc ccacctacca
     3361 caccggagtc gccttcttca gtcactgtaa cagaaactag tcagcagcag tcttctgtca
     3421 cggtgtcagt gcccctgcct ccaaaccagg aagaggtccg aagcatcaag agtgaaactg
     3481 acagcacaat tgaggtggac agtgttgtgg gggagctcca ggacctccag tcagagggga
     3541 atagctcacc agcaggcttt aatgcaagcg tgagctccag cagtagcaat cagccagaac
     3601 cagaacaccc agaaaaagcc tgtacaggtc agaaaagagt gaaagatact cagggagtag
     3661 gaagttcatc aaaaaagcag aagagaagcc ataaagccac tgtggtgaac aacaaaaaga
     3721 agggaaaagg cacaaacagt agtgacagtg aagatctttc agctggtgaa agtgtgacta
     3781 agactcaggc aatcaagtca gtccccactg gaatgaagac ccacaatagc aagtctcctg
     3841 caagaataca gtctccagga aaatgtggca agaatggaga taaagatcct gatctcaagg
     3901 agcccagtaa ccggcttccc aaggtttaca agtggagttt tcagatgtcg gacctggaaa
     3961 atatgacaag tgctgaacgt atctcaattc ttcaagaaaa attgcaagaa atcagaaaac
     4021 attatctctc attaaaatcc gaagtagcat ccattgatag gaggagaaaa cgtttaaaga
     4081 agaaagagag agaaagtgct gctacatctt cctcctcctc ctctccctca tccagctcca
     4141 taacagctgc tgttatgttg acactagctg agccgtcaat gtccagtgca tcacagaatg
     4201 gaatgtcagt tgagtgcagg tgacagcagg acttgctaga gcactttgca cttaatggct
     4261 gttgagggcc acatcttttt ttatactgca cagtggcaca caaacacaca aaatcagaca
     4321 agcactattt tatatttaaa aattatttct tgacaagctg acttggcact taagtgcact
     4381 ttttttatga agaaaaagta caacgaactg cttttcctca agcaataatt gtttccaact
     4441 tgtctgggaa ttgcgtgtct ggtaactcga aggccttcca ctgtggcaga ggaggctttt
     4501 cactgcctgt gaagatgatg cagtaggtgg agaaaaggtg ggccagaaca tgtgagatga
     4561 cttactgtat atgtattccc ttgtattttg ttaaagctgg aacatttgat atttttccat
     4621 tcatttatta aaaatatgaa cctattttca tttgtacaag ctaattgttt tttaaagcaa
     4681 gtcaccttat ggtgacttta attgtataag tcaagcacat gtaacaaatt caaaacctgc
     4741 agttaacagg atattattag atttcatcct ggtaaccaaa tattgaagat tctctttaaa
     4801 aatgactgaa catgtttaca ggtttgaatt aggctaaaag gtatgtggtg gcttttcaca
     4861 ccccttaaat tgaaatggga ctactgtact ttgccatttt tctataaatc agtatttttt
     4921 tttaattttg atataataca ttgtgtgaaa aaagaaaatg gctaataaac tgtattaaat
     4981 cttaaacaat gtataaagat tgtacttagc cagttcaaag tgtatattta ttcataatga
     5041 attataacag ttatattttt gtgttttctt gtaaatgttt cttttccctt aaatgcagat
     5101 aattcatttg tattgcttat tttattatga gcttacaaca aaaagaattc aggaacaaac
     5161 tgttagaatg gttcaaggct gtttctatga cctgcctcac aaagatgatt gttattttac
     5221 gtatacgtag ctaattgggt agtaggccta tacaattaaa tgccttgtat aaactgcaaa
     5281 atgaacgcca agctgttttc acttgtattg actttatgtt gtgtgattcc aatctctgtt
     5341 tggcacttgt atttaattcc ccacctttgt aatacatttg tatattgcgg atgtgttcat
     5401 tgaagctatt taaaacctgg cgctgttaaa tacacagtac ttcactgtac agactgtttt
     5461 actgttttaa ttgtggttct gtgtgctttt cttttctttt ctttcttttt ttcttccttt
     5521 tttttttttt ttttgaatga ggctggcatg ttttatttgt tttctggcaa tacatgtgag
     5581 aattttgaag cgttttgttg tggatgctaa cgtgtcagaa tccttaatcc tttacattga
     5641 acctttctaa gaaaagcatt ttcagtcttg taatgtgtgc ttacagtaac taattttgtt
     5701 gaaaaatggt ttcaagttac tcaaatttgt acagactgta aagatttgtt gacagcaaaa
     5761 tgttgaagaa aaactaatag aataaaacta taaagtatat attaggatct gcaaacatga
     5821 tgaattatgt aatatattgt acaaatgtaa gcagaagctc tgaaataaaa tgccatagtt
     5881 tgtgaatcct tga
//
