LOCUS       NM_001395713            5654 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus AT-rich interaction domain 4A (Arid4a), mRNA.
ACCESSION   NM_001395713 XM_039112257
VERSION     NM_001395713.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5654)
  AUTHORS   Wu,R.C., Jiang,M., Beaudet,A.L. and Wu,M.Y.
  TITLE     ARID4A and ARID4B regulate male fertility, a functional link to the
            AR and RB pathways
  JOURNAL   Proc Natl Acad Sci U S A 110 (12), 4616-4621 (2013)
   PUBMED   23487765
REFERENCE   2  (bases 1 to 5654)
  AUTHORS   Wu,M.Y., Eldin,K.W. and Beaudet,A.L.
  TITLE     Identification of chromatin remodeling genes Arid4a and Arid4b as
            leukemia suppressor genes
  JOURNAL   J Natl Cancer Inst 100 (17), 1247-1259 (2008)
   PUBMED   18728284
REFERENCE   3  (bases 1 to 5654)
  AUTHORS   Wu,M.Y., Tsai,T.F. and Beaudet,A.L.
  TITLE     Deficiency of Rbbp1/Arid4a and Rbbp1l1/Arid4b alters epigenetic
            modifications and suppresses an imprinting defect in the PWS/AS
            domain
  JOURNAL   Genes Dev 20 (20), 2859-2870 (2006)
   PUBMED   17043311
REFERENCE   4  (bases 1 to 5654)
  AUTHORS   Patsialou,A., Wilsker,D. and Moran,E.
  TITLE     DNA-binding properties of ARID family proteins
  JOURNAL   Nucleic Acids Res 33 (1), 66-80 (2005)
   PUBMED   15640446
  REMARK    Publication Status: Online-Only
REFERENCE   5  (bases 1 to 5654)
  AUTHORS   Fleischer,T.C., Yun,U.J. and Ayer,D.E.
  TITLE     Identification and characterization of three new components of the
            mSin3A corepressor complex
  JOURNAL   Mol Cell Biol 23 (10), 3456-3467 (2003)
   PUBMED   12724404
REFERENCE   6  (bases 1 to 5654)
  AUTHORS   Lai,A., Kennedy,B.K., Barbie,D.A., Bertos,N.R., Yang,X.J.,
            Theberge,M.C., Tsai,S.C., Seto,E., Zhang,Y., Kuzmichev,A.,
            Lane,W.S., Reinberg,D., Harlow,E. and Branton,P.E.
  TITLE     RBP1 recruits the mSIN3-histone deacetylase complex to the pocket
            of retinoblastoma tumor suppressor family proteins found in limited
            discrete regions of the nucleus at growth arrest
  JOURNAL   Mol Cell Biol 21 (8), 2918-2932 (2001)
   PUBMED   11283269
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Aug 2, 2021 this sequence version replaced XM_039112257.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            CDS exon combination :: SRR26360181.1017389.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMEA5760383, SAMEA5760386 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-174               JAXUCZ010000006.1  95258429-95258602
            175-232             JAXUCZ010000006.1  95259528-95259585
            233-343             JAXUCZ010000006.1  95261762-95261872
            344-409             JAXUCZ010000006.1  95264418-95264483
            410-500             JAXUCZ010000006.1  95265750-95265840
            501-580             JAXUCZ010000006.1  95280335-95280414
            581-675             JAXUCZ010000006.1  95280496-95280590
            676-808             JAXUCZ010000006.1  95283140-95283272
            809-888             JAXUCZ010000006.1  95288275-95288354
            889-965             JAXUCZ010000006.1  95289132-95289208
            966-1132            JAXUCZ010000006.1  95290221-95290387
            1133-1205           JAXUCZ010000006.1  95302613-95302685
            1206-1300           JAXUCZ010000006.1  95303995-95304089
            1301-1398           JAXUCZ010000006.1  95304230-95304327
            1399-1630           JAXUCZ010000006.1  95305323-95305554
            1631-1884           JAXUCZ010000006.1  95309630-95309883
            1885-2082           JAXUCZ010000006.1  95312107-95312304
            2083-2167           JAXUCZ010000006.1  95314744-95314828
            2168-2309           JAXUCZ010000006.1  95315517-95315658
            2310-3545           JAXUCZ010000006.1  95317710-95318945
            3546-3752           JAXUCZ010000006.1  95325672-95325878
            3753-3899           JAXUCZ010000006.1  95326701-95326847
            3900-5654           JAXUCZ010000006.1  95328086-95329840
FEATURES             Location/Qualifiers
     source          1..5654
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q24"
     gene            1..5654
                     /gene="Arid4a"
                     /note="AT-rich interaction domain 4A"
                     /db_xref="GeneID:314205"
                     /db_xref="RGD:1307442"
     exon            1..174
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            175..232
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     CDS             227..4003
                     /gene="Arid4a"
                     /note="AT rich interactive domain 4A (Rbp1 like)"
                     /codon_start=1
                     /product="AT-rich interactive domain-containing protein
                     4A"
                     /protein_id="NP_001382642.1"
                     /db_xref="GeneID:314205"
                     /db_xref="RGD:1307442"
                     /translation="MKAADEPAYLTVGTDVSAKYRGAFCEAKIKTVKRLVKVKVLLKQ
                     DNTTQLVQDDQVKGPLRVGAIVETRTSDGSIQEAIISKLTDASWYTVVFDDGDERTLR
                     RTSLCLKGERHFAESETLDQLPLTNPEHFGTPVIAKKTNRGRRSSLPITEDEKEEESS
                     GEEEEDKRRLNDEFLGRVVNVSPTAQSTECYPALVVSPSCNDDVTVKKDQCLVRSFID
                     SKFYSVARKDIKELDLLSLPESELCTKPGLRRASVFLKARIVPDNWKMDISEILESSS
                     SDDEECPAEEHEEEKEKEAKKEEEELPEEELDPEERDNFLQQLYKFMEDRGTPINKAP
                     VLGYKDLNLFKLFRLVYHQGGCDSIDSGAVWKQIYMDLGIPILNSAASYNVKTAYRKY
                     LYGFEEYCRSANIQFRTIHHHEPKVKEEKKDFEESMDEALKVAQEMPLMDVKSEPEEN
                     IDSNSESDREDTELKSPRGRRKIVREANCIKKELEEEKIEDKLIGDDIDNKDADDDDY
                     DIAEKKETELLLGRKTTPKHKEKKIKQQEDSERDSEEEEEKSQEREETESRCDSEGED
                     DEDDTEPCLTGTKVKVKYGRGKTQKIYEASIKSTEMDDGEVLYLVHYYGWNVRYDEWV
                     KADRIIWPLDKGGPKKKQKKKVKNKEDSEKDEKRDEERQKSKRGRPPLKSTFSSNMPY
                     SLSKTSNSEGKSDSCSSDSEAEDQLEKSSVSEELSPDIKEELEKSENVHDDKLAEENP
                     KTVHISNENDRTQAQPSEPLTVEAGDSDQIVHIFGDKVEQAEELKKQVEKSPKAKGRR
                     NKTKDLSLELIKISPFSQEEAGSEARGDTHSLEFSSLECKNFSSTEDDVDQYEKEKKL
                     KRKILGQHSPEKKLRLENGVEMTTGLSQERSDDSAVAEGVKGVHVEQRFEAEGEGMPS
                     LIAEPDQGIQEPTGVKPDSPAEEPAHTPLKEEEDVMPLIGPETLVCHEVDLDDLDEKE
                     KPSIEDVVIEGSESNSLGSVPPALPPVAQQNFSVASPLTLSQDESRSIKSESDITIEV
                     DSIAEESQEGLCERESANGFEASVTSGACGMIVHERESREKGQKRPSDANSGLMAKKQ
                     KRTPKRTSAAAKSEKNGAGQSSDSEDLPAMDSSSNCTPVKRLSLPKPQKLPRSPARIS
                     PHIKDGEKEKHREKHPNSSPRTYKWSFQLNELDNMNSTERISFLQEKLQEIRKYYMSL
                     KSEVATIDRRRKRLKKKDREVSHAGASMSSASSDTGMSPSSSSPPQNVLAVECR"
     exon            233..343
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            344..409
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            410..500
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            501..580
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            581..675
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            676..808
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            809..888
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            889..965
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            966..1132
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            1133..1205
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            1206..1300
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            1301..1398
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            1399..1630
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            1631..1884
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            1885..2082
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            2083..2167
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            2168..2309
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            2310..3545
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            3546..3752
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            3753..3899
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
     exon            3900..5654
                     /gene="Arid4a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagtctgctc aacagcttgt tatttggtgg attgtggcag taaatcgggg cgagtggggg
       61 aacccggcgc aggaactgcc gctgcggccg ggagcggtgc tgcccggacg gggacccacg
      121 gcgatcagtg gggcggcaga ctggagagct gacagcgctc tgcacccgca gtagcgcccg
      181 ggaaaagaac tcgaggaagc tggaacccca caggtcacca gtcaagatga aggcggcaga
      241 tgagcctgcc tacctgacag tgggaacgga cgtcagtgcc aagtaccgag gggccttctg
      301 tgaggcaaag atcaagacgg tgaaaaggct ggtcaaagtc aaggtacttc tgaagcagga
      361 taacacaaca cagttggtgc aagatgacca agtaaagggc cctttaagag ttggcgctat
      421 tgtggaaaca aggacatctg atggctctat ccaggaagct atcatcagca agttgacaga
      481 tgctagttgg tatactgtgg tgtttgatga cggtgatgag agaactctga ggcggacctc
      541 actttgcctg aaaggggaga gacattttgc cgagagcgag acgctcgatc agcttccttt
      601 aacaaaccca gagcattttg gaacgccagt cattgcaaag aagacaaaca gagggaggag
      661 gtcctcactg cccatcactg aagatgaaaa ggaagaagaa agcagtggcg aggaagagga
      721 agacaagagg cgtctcaatg atgagtttct aggaagagtt gtaaatgtgt cacccacagc
      781 acagagcacc gaatgctatc ctgctttggt tgtgtctccc agctgcaatg atgacgtcac
      841 agtgaaaaag gatcagtgtt tagttcgatc atttattgat tctaaatttt actctgtagc
      901 aagaaaggac attaaggaac tagaccttct cagtcttcca gaatctgagc tctgcaccaa
      961 gccagggctg cgaagggcga gtgtcttcct aaaagctcga attgttcctg ataattggaa
     1021 aatggacatc agtgaaatcc ttgagtcttc cagcagtgat gacgaagagt gcccagccga
     1081 ggagcatgaa gaggagaagg aaaaagaggc caaaaaggag gaagaagagc tgcctgagga
     1141 agaacttgat cctgaagaga gggacaactt cctccaacag ctttataagt ttatggaaga
     1201 cagaggtact ccaatcaaca aagcacctgt gttgggctat aaagatctca atctcttcaa
     1261 actcttcaga ctggtctatc atcagggggg atgtgacagt attgacagcg gtgctgtatg
     1321 gaagcaaatt tatatggacc ttggcattcc aattttgaat tcagctgctt cctacaatgt
     1381 aaaaactgct tatagaaaat atctctatgg ttttgaggag tactgccgtt ccgcaaatat
     1441 tcagtttaga actattcacc accatgaacc aaaagtaaaa gaggaaaaaa aagactttga
     1501 agaatcaatg gacgaggctc taaaagtagc ccaggaaatg cctttaatgg atgtgaagag
     1561 tgaacccgag gagaacattg actcaaacag tgaaagcgac agagaagaca cagaactaaa
     1621 gtcgccaaga gggagaagga aaattgttcg agaggcaaat tgtattaaaa aagaactaga
     1681 agaagagaaa attgaagaca aattgatcgg agatgatata gacaacaagg atgctgatga
     1741 cgacgactat gacatagcgg agaagaagga aactgagctg cttctcggga ggaaaaccac
     1801 accaaagcac aaagagaaga agatcaaaca gcaggaggat tccgagagag actcggagga
     1861 ggaggaagag aaaagccaag agagggaaga aactgaaagc aggtgtgact cggaagggga
     1921 ggacgacgag gatgacacgg agccctgcct gacaggaacc aaagtgaagg tcaagtatgg
     1981 acgaggaaaa actcagaaaa tttatgaagc cagcatcaaa agcaccgaga tggatgacgg
     2041 ggaggttttg tacctggtgc attattatgg ttggaatgtc agatatgatg aatgggtaaa
     2101 agctgacagg ataatctggc cgttggacaa aggtggacca aagaaaaaac aaaagaagaa
     2161 agttaagaat aaagaagata gcgaaaagga cgaaaagagg gatgaagaga ggcagaagtc
     2221 caaacgggga agaccgcctt taaaatctac tttttcgtca aacatgccat acagtttatc
     2281 taagacatca aacagtgaag gaaaatcaga ctcgtgctca tctgatagtg aggcagaaga
     2341 ccagctggag aagagctcag taagtgagga actttctcct gatattaaag aagaattaga
     2401 aaagagtgaa aatgtccatg atgataaact agccgaagaa aacccaaaga ctgtacatat
     2461 atcaaacgaa aacgacagga ctcaggcaca gccctcagaa cccctgacag tggaggcggg
     2521 agacagcgat caaatcgtgc acatttttgg agacaaagtg gaacaagcag aagaacttaa
     2581 gaagcaggtg gagaagtctc ctaaagcaaa gggaaggcgc aacaagacaa aagacctttc
     2641 tttagaactt atcaagattt cccctttcag ccaggaggaa gcaggcagcg aagctcgtgg
     2701 ggacactcat agcctggagt tttcttcact cgaatgtaaa aacttttctt ctactgaaga
     2761 tgatgtcgac caatatgaga aagaaaaaaa gttaaaacgg aaaatcctgg gacaacactc
     2821 cccagagaag aaactaagac ttgagaacgg cgtggaaatg acaactggct tgtcccaaga
     2881 aaggtctgac gacagcgccg tagccgaggg cgtgaaaggc gtgcacgtgg agcagcgctt
     2941 tgaagcagaa ggtgaaggga tgccatcgct gatcgcggag ccagaccagg gcatccaaga
     3001 gccgactggt gtgaagccag acagtccagc tgaggagcct gcgcacacgc cgctcaaaga
     3061 ggaggaggac gtgatgcctc tgattgggcc tgaaaccttg gtttgccacg aggtagactt
     3121 ggatgacttg gatgagaagg aaaagcccag tattgaggac gtggtaatag aaggctctga
     3181 gtctaactct ctgggctccg tcccgcctgc cctacctccc gtagcacagc agaacttctc
     3241 cgtagcttcc ccgctgactc tcagccaaga cgagtccaga agtataaaga gcgagagtga
     3301 cattacgatt gaagttgata gcattgctga agaatcgcag gaaggcctgt gtgagaggga
     3361 atcagcaaac ggatttgaag ccagcgtcac ctctggcgcc tgtggcatga tcgtccacga
     3421 gagagagagc agagagaagg gtcagaaaag gccaagcgat gcaaacagtg ggctaatggc
     3481 aaaaaagcaa aagcgaaccc caaagcggac gagtgctgca gccaagagtg agaagaacgg
     3541 agcaggacag agcagtgaca gcgaggacct tcctgccatg gacagttcca gtaactgcac
     3601 accagtgaag cgccttagcc tgcccaagcc acagaagctg ccacgctctc ccgcaagaat
     3661 ctcacctcat atcaaagatg gagagaaaga gaagcaccga gaaaagcatc caaattcatc
     3721 ccctagaaca tacaagtgga gcttccaact caatgaatta gataatatga acagtacaga
     3781 gagaatctct tttctccaag aaaaactaca ggaaatcaga aaatactaca tgtctttgaa
     3841 gtctgaagtt gcaaccatcg acagaaggag gaaaagatta aaaaagaaag accgagaagt
     3901 gtctcatgca ggcgcttcta tgtcatcggc ttcatccgac actggaatga gtccctcgtc
     3961 ctcgtctccc ccccaaaatg tacttgctgt agagtgcagg tgatgaacag ttcccatcct
     4021 cccagcagtc tgttgccata gacgtcagtc cccaaaccct gaactccaac cacagagagc
     4081 actcagctgg ctaagtatcc ccttcctgta cagtgtccag gactggatct atatcctcct
     4141 tccttctttt cattgttgca aaacataagc ttattaataa ttgaaggtta ggcagcctgc
     4201 cacaatggtc ataatttttc ctctgtattt ttttttcctt aatttttttt ttgtgtgata
     4261 gagaaaaaag ggcacttagc aaaattgaat ttgtataata aagctttcaa gtgttctagg
     4321 aatcatagac aagcaagtgc acatggtaaa catgagaaca ttatctggct gagtagttac
     4381 tgctgcactt tccctgagct gcattgaaca cttgctgagt agggagttta ttctgtgttg
     4441 ttcttttatt attataatta ttataataat tattattaat gttgattttt tttatttcaa
     4501 tttttgtgga agcacttgct atgtagaact gccagagtat atgttcagca gtgtgcccag
     4561 gtttaaaaga gtaattggga caaaataaat tgtgaaagga agtgtagttg actgaaaact
     4621 gcagttgtaa taagtcttcc actttttata ggacttttga gcacacaatt atgcaaatat
     4681 tttaatgttt attaatgttt acagtggaat tgtgaataag ttttcagtgg actatcttat
     4741 cccttgacaa aaatattttg tcttttttct atgtaatttc agagttttta ttttgttaca
     4801 aaaaatacaa aaatgaaata tataacaaca atgaagttat ttaacaagat ttctaaagct
     4861 gaaaattttg tgtaaaataa ggtattatct tgcaacttgt taaatatatt tattcagaca
     4921 ttggatggtt gtatttttat gtatttttta aaatattaat aaaattgaaa aaaagaacat
     4981 tctaggttaa ttcactcttt ggatggcaat tgttgtcagc tgtccctttt gcaggggctg
     5041 cgtgtgcagc cggggtgctg gaggggttct gtctctgcct tcccaacaga gcagctgaaa
     5101 gtgggcatct gggtcactca agtctgtcct ggtttagaga cgttggcagt cctcctattt
     5161 aaaccgttta gaggatcaca tttttggttg ccctaaagac gctttgtcac agtttttatg
     5221 ttcgctgtac tgccgaataa atttatatct cccaaagtcg agatgcaaca gttacgtaaa
     5281 gccgctatgt atgccttgtc tgtgaattgt tccacagact gatacatttg taaataattc
     5341 ttccaaaatc atgtatttaa agcagttttg catatacatt atgtaaaaaa ggtgattttt
     5401 ttaaacaatt tttaaactca tgtttgtaca ttaaaggggt tgttttaaag cctccttttc
     5461 tgtgtttata tgctgtgatg tggtagcccg aaggctgcag accctgaggg cggacagagg
     5521 cacagcacat gctacagcag aggattaccg atatcatgtt tctcaacatc atcttgccac
     5581 attgtgaacc tgtgattcag acttcttcca ttttctcaga gaattaaaac aaacaagtac
     5641 tcttgtaata taaa
//
