LOCUS       NM_001173981            1834 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus AT-rich interaction domain 3C (Arid3c), mRNA.
ACCESSION   NM_001173981 XM_001068924 XM_578450
VERSION     NM_001173981.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1834)
  AUTHORS   Tidwell,J.A., Schmidt,C., Heaton,P., Wilson,V. and Tucker,P.W.
  TITLE     Characterization of a new ARID family transcription factor
            (Brightlike/ARID3C) that co-activates Bright/ARID3A-mediated
            immunoglobulin gene transcription
  JOURNAL   Mol Immunol 49 (1-2), 260-272 (2011)
   PUBMED   21955986
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000005.1.
            
            On Sep 8, 2022 this sequence version replaced NM_001173981.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMN16418971,
                              SAMN16418988 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-136               JAXUCZ010000005.1  61692686-61692821   c
            137-520             JAXUCZ010000005.1  61691439-61691822   c
            521-593             JAXUCZ010000005.1  61689688-61689760   c
            594-777             JAXUCZ010000005.1  61687803-61687986   c
            778-1067            JAXUCZ010000005.1  61687399-61687688   c
            1068-1250           JAXUCZ010000005.1  61686687-61686869   c
            1251-1340           JAXUCZ010000005.1  61686386-61686475   c
            1341-1834           JAXUCZ010000005.1  61685511-61686004   c
FEATURES             Location/Qualifiers
     source          1..1834
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q22"
     gene            1..1834
                     /gene="Arid3c"
                     /gene_synonym="RGD1560943"
                     /note="AT-rich interaction domain 3C"
                     /db_xref="GeneID:502946"
                     /db_xref="RGD:1560943"
     exon            1..136
                     /gene="Arid3c"
                     /gene_synonym="RGD1560943"
                     /inference="alignment:Splign:2.1.0"
     exon            137..520
                     /gene="Arid3c"
                     /gene_synonym="RGD1560943"
                     /inference="alignment:Splign:2.1.0"
     CDS             209..1441
                     /gene="Arid3c"
                     /gene_synonym="RGD1560943"
                     /note="AT rich interactive domain 3C (BRIGHT-like)"
                     /codon_start=1
                     /product="AT-rich interactive domain-containing protein
                     3C"
                     /protein_id="NP_001167452.1"
                     /db_xref="GeneID:502946"
                     /db_xref="RGD:1560943"
                     /translation="MEALQRQQAARLAQGVGPLAPPRLPLPQPPLLGARTLQAPEGAL
                     GVVGAEEEEGAEEDEEGETPLVEEETAEQSHPGARCPNSPSGQSPGIQPHEWTYEEQF
                     KQLYELDADPKRKEFLDDLFSFMQKRGTPVNRVPIMAKQVLDLYALFRLVTAKGGLVE
                     VINRKVWREVTRGLSLPTTITSAAFTLRTQYMKYLYPYECETRALSSPGELQAAIDSN
                     RREGRRQAYTTVPLFNLAGPTPRGAPGPASSHGPAPTTTPNCPGSTQGSASGLPAHAC
                     AQLSPSPVKKEESGIPPPRLAIPVGLALEAAREKLAPEEPPEKRAVLMGPMDPPRLGA
                     TPSFLPRGKAPLREERLDGPLNLAGSGISSINMALEINGVVYTGILFARRQPVPASLG
                     PTNPPPPPSTGPPSSTLP"
     exon            521..593
                     /gene="Arid3c"
                     /gene_synonym="RGD1560943"
                     /inference="alignment:Splign:2.1.0"
     exon            594..777
                     /gene="Arid3c"
                     /gene_synonym="RGD1560943"
                     /inference="alignment:Splign:2.1.0"
     exon            778..1067
                     /gene="Arid3c"
                     /gene_synonym="RGD1560943"
                     /inference="alignment:Splign:2.1.0"
     exon            1068..1250
                     /gene="Arid3c"
                     /gene_synonym="RGD1560943"
                     /inference="alignment:Splign:2.1.0"
     exon            1251..1340
                     /gene="Arid3c"
                     /gene_synonym="RGD1560943"
                     /inference="alignment:Splign:2.1.0"
     exon            1341..1834
                     /gene="Arid3c"
                     /gene_synonym="RGD1560943"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaagagcgc agggcggcaa gagcgcacag cggggaccct gcgcagggaa cccagctgag
       61 accggagccg ccccaaaggc ggcagggcag acggaccgcg gtggagacac ccggggcttc
      121 gggcggtgcc aggcagacgg ccctttcctc gggcccccgc ctggtaccag gagccccccc
      181 agcaggggga ctgcgcctgg aagctgtaat ggaggccctg cagaggcagc aggcagcacg
      241 gctggcccaa ggggtggggc ccttggcccc tccacgccta ccgcttccac agcctcctct
      301 gcttggcgcc cggaccctac aggctcctga gggggcctta ggggtggttg gggctgaaga
      361 agaggagggt gctgaagaag atgaggaggg agagacaccc ttagtggaag aggagacagc
      421 tgagcagagc catccgggag cccgatgtcc caattcacca tccggccagt cccctggaat
      481 ccagccacat gagtggacct atgaggaaca gttcaagcag ctgtatgaac tcgacgcgga
      541 ccccaagagg aaggaatttc tggatgacct gtttagcttc atgcagaaga gggggacgcc
      601 agtgaaccgg gtgcccatca tggccaaaca ggtcctggat ctgtatgcgt tgtttcgctt
      661 ggtgacagcc aagggaggcc tggtggaagt catcaaccga aaagtgtggc gggaagtcac
      721 acgcggcctc agtttgccca ccaccatcac ctctgccgcc ttcacactac gtacccagta
      781 catgaagtat ttgtacccat acgagtgcga gacgcgggca ctcagttctc caggggagct
      841 ccaggctgcc atagacagca accggcgtga gggacgtcgc caggcctaca ccacggtccc
      901 gctcttcaac ttagcaggac ccacacctcg gggcgctcct ggtcccgcct cgagtcatgg
      961 ccccgccccg accacgaccc cgaattgccc cggttccacc cagggttctg cttctggctt
     1021 accagcgcat gcttgtgctc aactgagccc cagcccagta aagaaagagg agagtggaat
     1081 cccaccccct cgtctggcga tacctgtggg cttggccttg gaggctgcac gggagaagct
     1141 ggcaccagaa gagcctccag agaagagggc tgtgctgatg ggccccatgg atccacctcg
     1201 attgggagca acccccagtt tcctgccccg tggcaaggct cccctaaggg aagagcggtt
     1261 ggatgggccc ctcaatctgg caggcagtgg catcagcagt atcaacatgg cgctagagat
     1321 caatggggtt gtctacactg gtatcctctt tgcccgacgc cagcctgtgc cagcttcctt
     1381 gggtccgacc aatcctccac ccccaccctc tacagggccc ccttccagca ccttaccctg
     1441 aaagcagcta agagaactaa gagtctaaat atcattgctt aggggggaga aggcaccctc
     1501 ctacattgat tctttccgga tgtgatgccc actctgggat ccagtcctgg gagatgtcag
     1561 catgccacct cttacaccaa agggatttat tattcccttc catctacctc actgtgaagg
     1621 gagaacactg tctccctagc tagttccagc agcatctacc aaagagcttt ccccccaaca
     1681 tcccccatca tcccctcatg tgacccccat gtcaatgtta ccattggtac cccacctctt
     1741 tgagtcaatt cttaaagcgg gtaaagggtt ggatttgaat gtgaagatgt cccttgggtt
     1801 gcatctggaa aataaagttg tacttcctct gtct
//
